Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.5e-37 157.1 81 100.0
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.5e-26 122.5 84 71.4
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.2e-25 118.6 81 69.1
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 6.4e-25 117.1 81 66.7
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.6e-23 112.5 81 67.9
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 1.0e-22 109.8 87 63.2
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 7.3e-21 103.6 84 60.7
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.2e-20 100.5 48 83.3
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 8.0e-20 100.1 49 83.7
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 4.0e-19 97.8 82 58.5
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 2.0e-18 95.5 48 77.1
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 3.7e-17 91.3 43 81.4
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 8.3e-17 90.1 50 72.0
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 8.3e-17 90.1 50 72.0
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.9e-16 89.0 46 73.9
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.1e-16 87.8 50 70.0
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 5.4e-16 87.4 47 74.5
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 7.0e-16 87.0 45 73.3
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 9.2e-16 86.7 50 68.0
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 9.2e-16 86.7 48 68.8
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.5e-15 84.7 43 76.7
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.5e-15 84.7 43 76.7
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.5e-15 84.7 43 76.7
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.0e-15 84.0 46 63.0
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 6.0e-15 84.0 43 74.4
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.0e-14 83.2 51 62.7
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.3e-14 82.0 51 64.7
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.0e-14 81.6 81 48.1
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.9e-14 81.3 43 72.1
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 8.6e-14 80.1 50 66.0
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 1.1e-13 79.7 50 60.0
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 1.1e-13 79.7 48 58.3
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.5e-13 79.3 52 59.6
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.5e-13 78.6 81 46.9
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.5e-13 78.6 50 60.0
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 3.3e-13 78.2 50 60.0
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.3e-13 78.2 46 63.0
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 9.5e-13 76.6 46 67.4
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.6e-12 75.9 43 58.1
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 1.6e-12 75.9 52 57.7
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.1e-12 75.5 44 63.6
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.8e-12 75.1 77 44.2
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 4.7e-12 74.3 43 65.1
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.7e-12 74.3 52 51.9
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 4.7e-12 74.3 45 60.0
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 6.2e-12 73.9 47 57.4
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 8.1e-12 73.6 43 58.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 8.1e-12 73.6 45 57.8
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 1.4e-11 72.8 52 53.8
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.4e-11 72.8 43 60.5
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.8e-11 72.4 43 58.1
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.8e-11 72.4 43 58.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.3e-11 72.0 43 58.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.1e-11 71.6 43 53.5
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.1e-11 71.6 43 53.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.1e-11 71.6 43 53.5
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 3.1e-11 71.6 43 58.1
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.1e-11 71.6 44 61.4
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 4.0e-11 71.2 43 55.8
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 4.0e-11 71.2 52 50.0
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 5.2e-11 70.9 43 55.8
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 6.8e-11 70.5 43 55.8
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 8.9e-11 70.1 43 53.5
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.2e-10 69.7 43 53.5
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.2e-10 69.7 45 55.6
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 1.2e-10 69.7 43 53.5
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.5e-10 69.3 43 55.8
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 1.5e-10 69.3 43 55.8
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.5e-10 69.3 46 60.9
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.5e-10 69.3 43 53.5
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 2.0e-10 68.9 43 53.5
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.6e-10 68.6 43 55.8
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.4e-10 68.2 43 55.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 4.4e-10 67.8 43 55.8
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 4.4e-10 67.8 43 53.5
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 5.8e-10 67.4 43 55.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 5.8e-10 67.4 43 55.8
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.8e-10 67.4 43 53.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 5.8e-10 67.4 43 53.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 5.8e-10 67.4 43 53.5
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 9.9e-10 66.6 43 55.8
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.7e-09 65.9 43 53.5
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.2e-09 65.5 43 51.2
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 51.2
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 2.9e-09 65.1 43 51.2
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 3.7e-09 64.7 52 48.1
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 6.4e-09 63.9 43 51.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.4e-08 62.8 45 60.0
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.1e-08 61.2 44 59.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.7e-06 55.8 43 44.2
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.1e-06 54.3 32 62.5


User provided reference genes

Program Settings