Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 4.1e-46 187.6 86 100.0
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 3.6e-26 121.3 84 71.4
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 8.3e-23 110.2 72 66.7
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.4e-22 109.4 72 66.7
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 7.7e-21 103.6 63 73.0
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.9e-20 101.7 63 73.0
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.8e-20 101.3 72 63.9
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 5.0e-20 100.9 50 80.0
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 7.2e-19 97.1 56 73.2
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 3.6e-18 94.7 47 78.7
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.8e-17 92.4 67 64.2
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 6.8e-17 90.5 57 64.9
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 2.0e-16 89.0 59 66.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.4e-16 88.2 59 61.0
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 3.4e-16 88.2 57 59.6
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 3.4e-16 88.2 66 59.1
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 5.7e-16 87.4 56 64.3
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 7.5e-16 87.0 45 73.3
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.3e-15 86.3 55 63.6
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-15 85.1 55 61.8
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.7e-15 84.7 43 76.7
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.7e-15 84.7 43 76.7
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.7e-15 84.7 43 76.7
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 6.3e-15 84.0 43 74.4
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 8.3e-15 83.6 46 63.0
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 8.3e-15 83.6 58 56.9
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.8e-14 82.4 52 63.5
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 4.1e-14 81.3 43 72.1
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 7.0e-14 80.5 55 60.0
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 7.0e-14 80.5 62 58.1
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.6e-13 79.3 58 58.6
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 1.6e-13 79.3 57 57.9
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 4.5e-13 77.8 55 54.5
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 5.9e-13 77.4 60 51.7
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.0e-12 76.6 58 53.4
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.3e-12 76.3 44 63.6
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 1.7e-12 75.9 59 50.8
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.7e-12 75.9 48 54.2
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 2.3e-12 75.5 44 63.6
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 2.3e-12 75.5 59 54.2
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.9e-12 75.1 43 60.5
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.8e-12 74.7 63 54.0
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 5.0e-12 74.3 49 55.1
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 5.0e-12 74.3 43 65.1
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 6.6e-12 73.9 62 51.6
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 8.6e-12 73.6 43 62.8
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 8.6e-12 73.6 43 58.1
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 8.6e-12 73.6 45 57.8
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.5e-11 72.8 60 50.0
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 1.9e-11 72.4 43 58.1
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 1.9e-11 72.4 66 47.0
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 1.9e-11 72.4 43 58.1
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 2.5e-11 72.0 43 58.1
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 2.5e-11 72.0 43 58.1
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.3e-11 71.6 43 53.5
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.3e-11 71.6 43 53.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.3e-11 71.6 43 53.5
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.3e-11 71.6 64 45.3
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 4.2e-11 71.2 43 55.8
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 5.5e-11 70.9 43 55.8
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 7.2e-11 70.5 43 55.8
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 7.2e-11 70.5 63 46.0
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 9.5e-11 70.1 43 53.5
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.2e-10 69.7 43 53.5
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.2e-10 69.7 64 48.4
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 1.6e-10 69.3 49 51.0
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 1.6e-10 69.3 43 55.8
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.6e-10 69.3 46 60.9
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.6e-10 69.3 49 49.0
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 2.1e-10 68.9 59 47.5
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 2.1e-10 68.9 72 44.4
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 3.6e-10 68.2 43 55.8
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 4.7e-10 67.8 43 55.8
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 4.7e-10 67.8 43 53.5
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 4.7e-10 67.8 61 45.9
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 55.8
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 55.8
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 53.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 53.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 6.1e-10 67.4 43 53.5
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.0e-09 66.6 64 40.6
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.8e-09 65.9 43 53.5
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.3e-09 65.5 43 51.2
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.0e-09 65.1 43 51.2
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 3.0e-09 65.1 64 42.2
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 4.0e-09 64.7 63 46.0
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 4.0e-09 64.7 43 53.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 6.8e-09 63.9 43 51.2
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.5e-08 62.8 45 60.0
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 2.0e-08 62.4 62 38.7
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 5.7e-08 60.8 44 59.1
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.4e-06 54.3 32 62.5


User provided reference genes

Program Settings