Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0214900 Rhododendron simsii HOM05D005492 ORTHO05D006911 1.8e-116 422.5 203 100.0
vmacro04619 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 1.8e-97 359.4 174 95.4
CSS0048416 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 5.9e-96 354.4 175 94.9
TWI32G1091 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 2.3e-95 352.4 175 92.6
vmacro21373 Vaccinium macrocarpon HOM05D005492 ORTHO05D006911 2.9e-95 352.1 175 92.6
Actinidia19266 Actinidia chinensis HOM05D005492 ORTHO05D006911 8.6e-95 350.5 175 93.7
Hma1.2p1_1548F.1_g290020 Hydrangea macrophylla HOM05D005492 ORTHO05D006911 1.5e-94 349.7 174 93.1
Dinv44895 Davidia involucrata HOM05D005492 ORTHO05D006911 1.9e-94 349.4 175 92.6
Duzib041G0144 Durio zibethinus HOM05D005492 ORTHO05D006911 1.9e-94 349.4 175 90.9
Thecc.08G078100 Theobroma cacao HOM05D005492 ORTHO05D006911 1.9e-94 349.4 175 91.4
COL.COLO4_35339 Corchorus olitorius HOM05D005492 ORTHO05D006911 2.5e-94 349.0 175 90.9
MD08G1209200 Malus domestica HOM05D005492 ORTHO05D006911 3.3e-94 348.6 175 90.9
TAR628G0115 Trochodendron aralioides HOM05D005492 ORTHO05D006911 3.3e-94 348.6 175 92.0
MSTRG.24417 Avicennia marina HOM05D005492 ORTHO05D006911 4.2e-94 348.2 174 91.4
Cfa020694 Carpinus fangiana HOM05D005492 ORTHO05D006911 4.2e-94 348.2 175 91.4
Haze_18999 Corylus avellana HOM05D005492 ORTHO05D006911 4.2e-94 348.2 175 91.4
Cpa.g.sc160.3 Carica papaya HOM05D005492 ORTHO05D006911 5.5e-94 347.8 175 90.3
CiPaw.15G151700 Carya illinoinensis HOM05D005492 ORTHO05D006911 5.5e-94 347.8 175 90.3
Dinv22020 Davidia involucrata HOM05D005492 ORTHO05D006911 5.5e-94 347.8 175 92.0
Manes.18G054601 Manihot esculenta HOM05D005492 ORTHO05D006911 5.5e-94 347.8 175 90.9
Nitab4.5_0000377g0170 Nicotiana tabacum HOM05D005492 ORTHO05D006911 5.5e-94 347.8 192 83.9
Actinidia10257 Actinidia chinensis HOM05D005492 ORTHO05D006911 7.2e-94 347.4 175 92.0
Duzib041G0066 Durio zibethinus HOM05D005492 ORTHO05D006911 7.2e-94 347.4 175 90.3
Glyma.06G091400 Glycine max HOM05D005492 ORTHO05D006911 7.2e-94 347.4 172 91.9
Ciclev10002666m.g Citrus clementina HOM05D005492 ORTHO05D006911 9.5e-94 347.1 175 90.3
CsaV3_3G048290 Cucumis sativus L. HOM05D005492 ORTHO05D006911 9.5e-94 347.1 175 90.3
RcHm_v2.0_Chr7g0232851 Rosa chinensis HOM05D005492 ORTHO05D006911 9.5e-94 347.1 175 90.9
Nitab4.5_0005557g0040 Nicotiana tabacum HOM05D005492 ORTHO05D006911 1.2e-93 346.7 175 90.3
Prupe.1G541400 Prunus persica HOM05D005492 ORTHO05D006911 1.2e-93 346.7 175 90.3
Sabra02G0084500 Salix brachista HOM05D005492 ORTHO05D006911 1.2e-93 346.7 175 90.9
Solyc04g076890.4 Solanum lycopersicum HOM05D005492 ORTHO05D006911 1.2e-93 346.7 177 89.3
TWI12G1341 Tripterygium wilfordii HOM05D005492 ORTHO05D006911 1.2e-93 346.7 175 90.3
Eucgr.F00462 Eucalyptus grandis HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 90.9
FAN04G2818 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 90.9
Gohir.A05G264075 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 89.7
Gohir.D05G266500 Gossypium hirsutum HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 89.7
Gorai.009G278400 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 89.7
Lj1g0026792 Lotus japonicus HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 90.9
Oeu002945.1 Olea europaea HOM05D005492 ORTHO05D006911 1.6e-93 346.3 175 89.7
MD15G1393200 Malus domestica HOM05D005492 ORTHO05D006911 2.1e-93 345.9 175 89.7
Sopen04g030660 Solanum pennellii HOM05D005492 ORTHO05D006911 2.1e-93 345.9 175 89.7
PGSC0003DMG400006380 Solanum tuberosum HOM05D005492 ORTHO05D006911 2.1e-93 345.9 175 89.7
arahy.Tifrunner.gnm1.ann1.7IN1UY Arachis hypogaea HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 90.3
arahy.Tifrunner.gnm1.ann1.EMS59G Arachis hypogaea HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 90.3
CAN.G723.31 Capsicum annuum HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 89.1
Gohir.D06G028400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 89.7
Oeu026363.1 Olea europaea HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 89.7
Potri.002G107600 Populus trichocarpa HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 90.3
GSVIVG01009242001 Vitis vinifera HOM05D005492 ORTHO05D006911 2.8e-93 345.5 175 90.9
unitig_8.g4867 Utricularia gibba HOM05D002193 ORTHO05D002631 3.6e-93 345.1 171 92.4
VMungo1309G2191 Vigna mungo HOM05D005492 ORTHO05D006911 3.6e-93 345.1 175 90.3
Carub.0001s2610 Capsella rubella HOM05D005492 ORTHO05D006911 4.7e-93 344.7 175 88.6
CARHR027130 Cardamine hirsuta HOM05D005492 ORTHO05D006911 4.7e-93 344.7 175 88.6
Migut.N02829 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.7e-93 344.7 174 90.8
Migut.O00437 Erythranthe guttata HOM05D005492 ORTHO05D006911 4.7e-93 344.7 174 90.8
Glyma.04G089600 Glycine max HOM05D005492 ORTHO05D006911 4.7e-93 344.7 172 91.3
Thhalv10008910m.g Eutrema salsugineum HOM05D005492 ORTHO05D006911 6.1e-93 344.4 175 89.1
Gohir.A06G029400 Gossypium hirsutum HOM05D005492 ORTHO05D006911 6.1e-93 344.4 175 89.1
PGR083G0175 Punica granatum HOM05D005492 ORTHO05D006911 6.1e-93 344.4 175 89.7
FAN08G0693 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.0e-92 343.6 175 89.7
FAN18G0360 Fragaria x ananassa HOM05D005492 ORTHO05D006911 1.0e-92 343.6 175 89.7
Lj4A81T75 Lonicera japonica HOM05D005492 ORTHO05D006911 1.0e-92 343.6 173 91.9
MBI16_g26726_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 1.0e-92 343.6 182 89.0
Gorai.010G031300 Gossypium raimondii HOM05D005492 ORTHO05D006911 1.4e-92 343.2 175 89.1
C07p17680 Brassica napus HOM05D005492 ORTHO05D006911 1.8e-92 342.8 175 89.1
Medtr3g111110 Medicago truncatula HOM05D005492 ORTHO05D006911 1.8e-92 342.8 175 89.7
THA.LOC104800327 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 1.8e-92 342.8 175 89.1
HanXRQChr01g0001771 Helianthus annuus HOM05D005492 ORTHO05D006911 2.3e-92 342.4 175 89.7
QL12p040192 Quercus lobata HOM05D005492 ORTHO05D006911 2.3e-92 342.4 174 89.1
Sc02g0008380 Simmondsia chinensis HOM05D005492 ORTHO05D006911 2.3e-92 342.4 175 89.1
BcaC06g35300 Brassica carinata HOM05D005492 ORTHO05D006911 3.0e-92 342.0 175 88.6
BolC3t19680H Brassica oleracea HOM05D005492 ORTHO05D006911 3.0e-92 342.0 175 88.6
A07p11710 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.6
A08p26210 Brassica napus HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.6
BolC7t42275H Brassica oleracea HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.6
BraA07t28956Z Brassica rapa HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.6
BraA08t34572Z Brassica rapa HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.6
CANSAT35G2015 Cannabis sativa HOM05D005492 ORTHO05D006911 4.0e-92 341.7 175 88.0
AL1G40960 Arabidopsis lyrata HOM05D005492 ORTHO05D006911 5.2e-92 341.3 175 87.4
AT1G27530 Arabidopsis thaliana HOM05D005492 ORTHO05D006911 5.2e-92 341.3 175 87.4
BcaC01g06944 Brassica carinata HOM05D005492 ORTHO05D006911 5.2e-92 341.3 175 88.0
Psat5g017920 Pisum sativum HOM05D005492 ORTHO05D006911 5.2e-92 341.3 175 88.6
SGA_v2.0_scaffold28G11869 Striga asiatica HOM05D005492 ORTHO05D006911 5.2e-92 341.3 174 88.5
C03p74220 Brassica napus HOM05D005492 ORTHO05D006911 6.8e-92 340.9 175 88.0
CDE04G0412 Ceratophyllum demersum HOM05D005492 ORTHO05D006911 8.9e-92 340.5 175 89.1
Lsat_1_v5_gn_9_81101 Lactuca sativa HOM05D005492 ORTHO05D006911 8.9e-92 340.5 174 88.5
Aqoxy5G01947 Aquilegia oxysepala HOM05D005492 ORTHO05D006911 1.2e-91 340.1 175 89.7
BcaC01g01601 Brassica carinata HOM05D005492 ORTHO05D006911 1.2e-91 340.1 175 88.0
Lalb_Chr08g0242711 Lupinus albus HOM05D005492 ORTHO05D006911 1.2e-91 340.1 175 88.0
Sp1g23790 Schrenkiella parvula HOM05D005492 ORTHO05D006911 1.2e-91 340.1 175 87.4
PSO210G2227 Papaver somniferum HOM05D005492 ORTHO05D006911 1.5e-91 339.7 175 88.6
PSO761G0095 Papaver somniferum HOM05D005492 ORTHO05D006911 1.5e-91 339.7 175 88.6
BcaC05g26754 Brassica carinata HOM05D005492 ORTHO05D006911 2.0e-91 339.3 175 88.0
Cc10_g08150 Coffea canephora HOM05D005492 ORTHO05D006911 2.6e-91 339.0 173 89.6
Ca_15548_v3 Cicer arietinum L. HOM05D005492 ORTHO05D006911 3.4e-91 338.6 175 88.0
Duzib116G0911 Durio zibethinus HOM05D005492 ORTHO05D006911 3.4e-91 338.6 174 87.4
TPR.G12370 Trifolium pratense HOM05D005492 ORTHO05D006911 3.4e-91 338.6 175 88.6
Ah.00g000130 Amaranthus hybridus HOM05D005492 ORTHO05D006911 7.5e-91 337.4 175 87.4
BcaB03g13980 Brassica carinata HOM05D005492 ORTHO05D006911 7.5e-91 337.4 175 87.4
ECA232G4293 Erigeron canadensis HOM05D005492 ORTHO05D006911 2.2e-90 335.9 175 87.4
Sed0023469 Sechium edule HOM05D005492 ORTHO05D006911 3.7e-90 335.1 175 86.3
Atru.BG.248.p Acer truncatum HOM05D005492 ORTHO05D006911 8.3e-90 334.0 174 88.5
MSTRG.22188 Avicennia marina HOM05D005492 ORTHO05D006911 4.1e-89 331.6 173 89.0
AUR62035408 Chenopodium quinoa HOM05D005492 ORTHO05D006911 7.0e-89 330.9 172 86.6
AUR62035696 Chenopodium quinoa HOM05D005492 ORTHO05D006911 7.0e-89 330.9 172 86.6
TAR381G0934 Trochodendron aralioides HOM05D005492 ORTHO05D006911 7.0e-89 330.9 175 89.7
Aa31LG7G10120 Aethionema arabicum HOM05D005492 ORTHO05D006911 1.2e-88 330.1 174 86.2
ATR0767G107 Amborella trichopoda HOM05D005492 ORTHO05D006911 1.7e-87 326.2 172 84.9
HPP92_010753 Vanilla planifolia HOM05D005492 ORTHO05D006911 2.3e-87 325.9 175 87.4
SEGI_29138 Sequoiadendron giganteum HOM05D005492 ORTHO05D006911 1.9e-86 322.8 175 83.4
Os10g0205200 Oryza sativa ssp. japonica HOM05D005492 ORTHO05D006911 6.8e-84 314.3 174 82.8
Hund05232 Selenicereus undatus HOM05D005492 ORTHO05D006911 6.8e-84 314.3 244 64.8
Zm00001eb010950 Zea mays HOM05D005492 ORTHO05D006911 6.8e-84 314.3 174 82.2
Mapoly0013s0107 Marchantia polymorpha HOM05D005492 ORTHO05D006911 1.3e-82 310.1 166 80.7
Pp3c16_2350 Physcomitrium patens HOM05D005492 ORTHO05D006911 3.9e-79 298.5 174 73.6
ClCG11G014860 Citrullus lanatus HOM05D005492 ORTHO05D006911 3.3e-78 295.4 150 88.7
CBR_g37394 Chara braunii HOM05D005492 ORTHO05D006911 9.5e-78 293.9 172 73.8
Peaxi162Scf00626g00718 Petunia axillaris HOM05D005492 ORTHO05D006911 9.5e-78 293.9 181 79.6
DCAR_009548 Daucus carota HOM05D005492 ORTHO05D006911 9.5e-70 267.3 132 92.4
PRCOL_00001807 Prasinoderma coloniale HOM05D005492 ORTHO05D006911 1.6e-69 266.5 165 67.3
Phvul.009G146200 Phaseolus vulgaris HOM05D005492 ORTHO05D006911 3.6e-69 265.4 131 92.4
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 8.1e-69 264.2 172 75.6
Cre02.g142350 Chlamydomonas reinhardtii HOM05D005492 ORTHO05D006911 8.1e-69 264.2 163 69.9
TAR381G1662 Trochodendron aralioides HOM05D005492 ORTHO05D006911 1.2e-67 260.4 131 90.8
Atru.chr13.934 Acer truncatum HOM05D005492 ORTHO05D006911 4.0e-60 235.3 125 87.2
Duzib093G0511 Durio zibethinus HOM05D005492 ORTHO05D006911 1.0e-55 220.7 117 83.8
MELO3C003490.2 Cucumis melo HOM05D005492 ORTHO05D006911 3.9e-55 218.8 124 80.6
Haze_27628 Corylus avellana HOM05D005492 ORTHO05D006911 1.1e-54 217.2 170 57.6
FvH4_5g33720 Fragaria vesca HOM05D005492 ORTHO05D006911 5.6e-54 214.9 112 87.5
THA.LOC104807850 Tarenaya hassleriana HOM05D005492 ORTHO05D006911 3.1e-52 209.1 125 76.8
MBI16_g14677_MAGBIO Magnolia biondii HOM05D005492 ORTHO05D006911 2.0e-51 206.5 114 86.8
AagrBONN_evm.TU.Sc2ySwM_369.477 Anthoceros agrestis HOM05D005492 ORTHO05D006911 1.0e-47 194.1 112 76.8
Prupe.7G085600 Prunus persica HOM05D005492 ORTHO05D006911 4.3e-46 188.7 104 82.7
Nn2g14030 Nelumbo nucifera HOM05D005492 ORTHO05D006911 5.6e-46 188.3 141 67.4
CSS0004398 Camellia sinensis var. sinensis HOM05D005492 ORTHO05D006911 1.1e-41 174.1 91 90.1
MD08G1145300 Malus domestica HOM05D005492 ORTHO05D006911 3.7e-37 159.1 87 82.8
Dinv07042 Davidia involucrata HOM05D005492 ORTHO05D185078 2.6e-35 152.9 177 53.1
MD05G1007500 Malus domestica HOM05D005492 ORTHO05D006911 2.5e-30 136.3 113 61.1
MD16G1251000 Malus domestica HOM05D005492 ORTHO05D245813 8.2e-29 131.3 132 53.8
Nn5g29750 Nelumbo nucifera HOM05D005492 ORTHO05D006911 4.1e-28 129.0 66 87.9
MD00G1203800 Malus domestica HOM05D005492 ORTHO05D247194 1.5e-19 100.5 115 47.0


User provided reference genes

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