Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.2e-99 366.7 203 100.0
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.3e-82 310.1 205 85.4
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.1e-60 237.3 194 68.6
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-53 213.0 203 60.1
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 8.1e-53 211.1 197 58.9
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.4e-52 210.3 198 59.1
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.0e-52 208.8 203 58.6
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 4.0e-52 208.8 202 59.9
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.5e-51 206.8 202 59.4
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.4e-51 205.7 202 58.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 3.4e-51 205.7 203 59.1
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.7e-50 203.4 202 58.4
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.7e-50 203.4 198 58.1
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.7e-50 203.4 197 56.3
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.2e-50 203.0 203 57.6
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.9e-50 201.8 203 58.6
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-49 200.7 202 58.4
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.4e-49 200.3 202 57.9
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 7.1e-49 198.0 203 58.6
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.2e-48 197.2 197 56.3
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 1.6e-48 196.8 203 57.6
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.6e-48 196.8 202 57.4
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.1e-48 196.4 202 56.9
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 2.1e-48 196.4 207 54.1
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.5e-48 195.7 199 55.8
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.5e-48 195.7 203 57.1
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 4.6e-48 195.3 200 58.0
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 3.0e-47 192.6 202 55.4
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.9e-47 192.2 200 57.0
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 8.7e-47 191.0 197 54.8
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.5e-46 190.3 204 59.3
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 3.3e-46 189.1 202 56.9
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 3.3e-46 189.1 197 55.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.3e-46 189.1 201 54.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 4.3e-46 188.7 202 57.4
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 4.3e-46 188.7 176 60.8
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 7.3e-46 188.0 202 54.0
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 9.6e-46 187.6 202 56.9
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 2.1e-45 186.4 202 56.9
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.8e-45 186.0 202 55.4
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 3.6e-45 185.7 201 53.7
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 3.6e-45 185.7 202 56.9
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-44 184.1 202 55.9
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.4e-44 183.0 202 55.0
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.1e-44 182.6 202 53.0
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 4.0e-44 182.2 197 52.8
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.2e-43 180.6 182 56.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 2.0e-43 179.9 196 54.6
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 2.6e-43 179.5 207 54.1
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 4.5e-43 178.7 203 54.2
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.3e-42 177.2 202 51.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 4.9e-42 175.3 202 54.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-41 174.1 202 55.0
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 1.1e-41 174.1 196 53.6
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.1e-41 174.1 196 53.6
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.4e-41 173.7 199 55.8
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.4e-41 173.7 185 57.3
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 3.2e-41 172.6 203 52.2
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.2e-41 172.6 196 53.1
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.6e-40 170.2 203 50.7
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.1e-40 169.9 202 51.0
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 3.5e-40 169.1 204 51.0
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.5e-40 169.1 203 53.2
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.3e-39 167.2 183 51.4
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.3e-39 167.2 199 50.3
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.8e-39 166.8 198 48.0
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.3e-39 166.4 201 51.2
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.3e-39 166.4 201 51.2
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 5.1e-39 165.2 187 49.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 6.7e-39 164.9 185 49.2
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-38 164.1 184 52.7
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.3e-38 162.2 203 50.2
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 9.6e-38 161.0 186 51.1
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 9.6e-38 161.0 203 47.8
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.3e-37 160.6 202 51.0
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.3e-37 160.6 203 47.8
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.3e-37 160.6 199 48.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.1e-37 159.8 199 48.7
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.7e-37 159.1 202 48.5
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.7e-37 159.1 199 48.7
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.4e-36 157.1 197 48.2
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.8e-36 156.8 203 47.8
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.8e-36 156.8 197 48.7
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.0e-36 155.6 182 50.5
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 6.9e-36 154.8 169 55.0
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.2e-35 154.1 202 45.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.0e-35 153.3 200 47.0
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.4e-35 152.5 202 46.5
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 3.4e-35 152.5 207 47.3
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.2e-34 149.8 199 47.2
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 2.9e-34 149.4 202 47.5
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 1.1e-33 147.5 188 46.3
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.4e-33 147.1 200 45.0
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.9e-33 146.7 201 47.3
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 9.3e-33 144.4 202 46.0
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 3.5e-32 142.5 206 45.6
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 7.9e-32 141.4 203 44.8
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 2.3e-31 139.8 201 44.3
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 5.1e-31 138.7 196 43.4
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 5.1e-31 138.7 202 45.0
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 6.7e-31 138.3 204 45.1
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 6.7e-31 138.3 165 47.9
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 6.7e-31 138.3 202 45.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-30 137.1 181 43.6
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 5.7e-30 135.2 207 41.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 7.4e-30 134.8 205 44.9
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 9.6e-30 134.4 206 41.7
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 9.6e-30 134.4 201 44.8
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.1e-28 131.0 201 44.8
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.4e-28 130.6 177 46.9
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 2.4e-28 129.8 202 42.6
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.1e-28 129.0 213 44.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 1.0e-26 124.4 199 41.2
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 2.9e-26 122.9 145 51.0
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.8e-26 122.5 205 39.0
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 5.0e-26 122.1 187 43.9
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.5e-26 121.7 125 55.2
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.1e-25 120.9 192 41.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.2e-25 119.4 191 42.9
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 4.2e-25 119.0 187 43.3
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.2e-25 119.0 208 39.4
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.6e-24 117.1 198 40.9
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.5e-24 115.9 184 43.5
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.5e-24 115.9 184 43.5
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 6.1e-24 115.2 184 42.9
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 7.9e-24 114.8 184 42.9
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.9e-24 114.8 125 52.8
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.0e-23 114.4 181 41.4
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.3e-23 114.0 116 51.7
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 1.8e-23 113.6 186 42.5
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.3e-23 113.2 178 44.9
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 3.9e-23 112.5 180 41.7
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 5.1e-23 112.1 192 40.6
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.1e-23 112.1 197 39.6
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.7e-23 111.7 171 41.5
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.1e-22 110.9 207 38.6
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.5e-22 110.5 132 51.5
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.5e-22 109.8 200 41.5
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.3e-22 109.0 198 38.9
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 7.4e-22 108.2 207 42.0
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.3e-21 107.5 196 37.8
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.6e-21 107.1 185 40.0
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.6e-21 107.1 184 41.8
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 8.2e-21 104.8 203 37.9
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.1e-20 102.8 184 39.1
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 5.9e-19 98.6 201 36.3
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 7.7e-19 98.2 201 36.3
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 7.7e-19 98.2 141 45.4
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 2.2e-18 96.7 148 41.2
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 8.5e-18 94.7 142 44.4
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.3e-13 80.9 107 45.8
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 5.3e-12 75.5 76 56.6


User provided reference genes

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