Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 3.7e-91 338.2 173 100.0
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.3e-56 223.4 129 89.1
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 9.0e-45 184.1 131 75.6
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 8.2e-38 161.0 130 66.2
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 5.5e-34 148.3 130 64.6
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 2.7e-33 146.0 128 63.3
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 5.1e-32 141.7 131 60.3
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 5.1e-32 141.7 129 62.8
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 5.1e-32 141.7 129 62.8
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 4.4e-31 138.7 129 62.0
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 9.7e-31 137.5 136 60.3
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 9.7e-31 137.5 130 61.5
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.3e-30 137.1 135 58.5
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.2e-30 136.3 129 60.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 2.8e-30 136.0 132 61.4
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 1.4e-29 133.7 132 61.4
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.4e-29 133.7 130 60.8
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.4e-29 132.9 139 59.0
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 3.1e-29 132.5 130 60.8
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 7.0e-29 131.3 131 55.7
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 7.0e-29 131.3 131 60.3
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 7.0e-29 131.3 129 58.9
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 9.1e-29 131.0 129 61.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 1.2e-28 130.6 134 59.7
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.2e-28 130.6 130 63.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.5e-28 130.2 133 58.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.5e-28 130.2 134 59.0
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 2.6e-28 129.4 129 56.6
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.6e-28 129.4 129 55.8
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.5e-28 128.6 129 55.8
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 5.9e-28 128.3 129 60.5
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 5.9e-28 128.3 133 57.1
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 5.9e-28 128.3 130 60.0
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 1.0e-27 127.5 129 55.8
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 1.0e-27 127.5 129 55.8
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 1.0e-27 127.5 129 55.8
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 1.0e-27 127.5 129 55.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 1.0e-27 127.5 131 59.5
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.0e-27 127.5 131 56.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.0e-27 127.5 136 56.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.0e-27 127.5 133 57.1
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.0e-27 127.5 132 57.6
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.3e-27 127.1 129 58.1
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 1.7e-27 126.7 131 55.7
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.2e-27 126.3 129 56.6
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 2.2e-27 126.3 129 54.3
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 2.2e-27 126.3 129 55.8
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.9e-27 125.9 129 54.3
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 3.8e-27 125.6 114 60.5
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.8e-27 125.6 135 56.3
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 3.8e-27 125.6 136 55.9
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.8e-27 125.6 133 60.2
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 5.0e-27 125.2 129 54.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 6.5e-27 124.8 129 54.3
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 6.5e-27 124.8 132 59.8
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.1e-26 124.0 131 56.5
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.1e-26 124.0 133 56.4
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.5e-26 123.6 131 57.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 1.5e-26 123.6 129 54.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.5e-26 123.6 133 54.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.9e-26 123.2 129 53.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.9e-26 123.2 129 53.5
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.2e-26 122.5 131 57.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 5.5e-26 121.7 129 57.4
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.5e-26 121.7 129 52.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 5.5e-26 121.7 131 55.0
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 7.2e-26 121.3 135 52.6
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 7.2e-26 121.3 133 55.6
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 9.4e-26 120.9 138 54.3
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.2e-25 120.6 134 54.5
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.2e-25 120.6 134 55.2
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.2e-25 120.6 132 53.0
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.7e-25 119.4 129 56.6
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.7e-25 119.4 130 55.4
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.7e-25 119.4 134 53.7
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.7e-25 119.4 127 57.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 3.6e-25 119.0 133 57.1
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 6.1e-25 118.2 103 65.0
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.1e-25 118.2 135 54.1
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 6.1e-25 118.2 133 55.6
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 8.0e-25 117.9 133 53.4
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-24 117.1 85 70.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.4e-24 117.1 85 70.6
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.4e-24 117.1 132 53.8
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.4e-24 117.1 130 55.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.8e-24 116.7 130 52.3
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.8e-24 116.7 130 53.8
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.3e-24 116.3 128 56.2
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 4.0e-24 115.5 127 51.2
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 4.0e-24 115.5 138 50.0
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 5.2e-24 115.2 131 55.0
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 1.1e-23 114.0 83 71.1
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 1.1e-23 114.0 113 54.9
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.5e-23 113.6 135 52.6
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 2.6e-23 112.8 131 52.7
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 4.4e-23 112.1 133 51.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 7.5e-23 111.3 83 68.7
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.7e-22 109.0 129 48.1
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 8.2e-22 107.8 127 49.6
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.4e-21 107.1 80 68.8
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 7.0e-21 104.8 84 64.3
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.6e-20 103.6 125 48.8
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 4.5e-20 102.1 84 60.7
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.8e-19 99.0 77 64.9
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.5e-18 97.1 77 62.3
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.5e-18 96.3 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 7.2e-18 94.7 76 59.2
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.7e-17 92.8 78 60.3
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 4.7e-17 92.0 103 51.5
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.8e-14 82.8 106 50.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.1e-13 80.9 64 59.4
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.1e-13 79.3 65 61.5
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 9.1e-13 77.8 65 60.0
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.2e-12 77.4 65 60.0
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.6e-12 77.0 63 60.3
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.7e-12 76.3 65 58.5
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.7e-12 76.3 82 46.3
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.7e-12 76.3 65 58.5
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 7.7e-12 74.7 65 56.9
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.3e-11 73.9 65 56.9
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.0e-08 62.8 47 63.8
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.2e-07 60.8 69 49.3
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 1.3e-06 57.4 81 49.4
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.3e-06 57.4 96 34.4
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 2.2e-06 56.6 87 39.1


User provided reference genes

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