Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0199400 Rhododendron simsii HOM05D005261 ORTHO05D006180 1.6e-216 755.7 374 100.0
RhsimUnG0073100 Rhododendron simsii HOM05D005261 ORTHO05D006180 7.6e-214 746.9 374 99.2
vmacro04773 Vaccinium macrocarpon HOM05D005261 ORTHO05D006180 5.6e-193 677.6 374 89.0
Actinidia31491 Actinidia chinensis HOM05D005261 ORTHO05D006180 1.8e-162 576.2 372 76.6
Dinv44727 Davidia involucrata HOM05D005261 ORTHO05D006180 1.9e-156 556.2 358 77.1
Dinv13059 Davidia involucrata HOM05D005261 ORTHO05D006180 9.4e-156 553.9 370 75.7
GSVIVG01008967001 Vitis vinifera HOM05D005261 ORTHO05D006180 7.4e-153 544.3 370 73.2
Hma1.2p1_0276F.1_g111380 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 1.3e-152 543.5 358 75.1
Atru.chr13.1289 Acer truncatum HOM05D005261 ORTHO05D006180 1.0e-149 533.9 364 72.3
Cpa.g.sc77.98 Carica papaya HOM05D005261 ORTHO05D006180 1.0e-149 533.9 353 74.5
Thecc.08G114100 Theobroma cacao HOM05D005261 ORTHO05D006180 2.5e-148 529.3 358 71.8
Gorai.010G045400 Gossypium raimondii HOM05D005261 ORTHO05D006180 3.2e-148 528.9 373 68.9
FAN18G3314 Fragaria x ananassa HOM05D005261 ORTHO05D006180 4.2e-148 528.5 372 70.7
FAN08G3477 Fragaria x ananassa HOM05D005261 ORTHO05D006180 7.2e-148 527.7 372 70.7
Cfa015937 Carpinus fangiana HOM05D005261 ORTHO05D006180 9.4e-148 527.3 368 70.7
QL12p035629 Quercus lobata HOM05D005261 ORTHO05D006180 2.1e-147 526.2 367 70.3
Duzib093G0733 Durio zibethinus HOM05D005261 ORTHO05D006180 3.6e-147 525.4 355 70.7
FvH4_5g38270 Fragaria vesca HOM05D005261 ORTHO05D006180 3.6e-147 525.4 372 70.7
FAN13G1502 Fragaria x ananassa HOM05D005261 ORTHO05D006180 4.7e-147 525.0 372 70.4
RcHm_v2.0_Chr7g0240261 Rosa chinensis HOM05D005261 ORTHO05D006180 4.7e-147 525.0 356 71.9
Gohir.D06G040600 Gossypium hirsutum HOM05D005261 ORTHO05D006180 6.1e-147 524.6 373 68.6
TWI36G1273 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 1.4e-146 523.5 369 70.2
Ciclev10001407m.g Citrus clementina HOM05D005261 ORTHO05D006180 5.7e-145 518.1 375 70.1
FAN04G2261 Fragaria x ananassa HOM05D005261 ORTHO05D006180 5.7e-145 518.1 372 69.6
CiPaw.06G023200 Carya illinoinensis HOM05D005261 ORTHO05D006180 1.7e-144 516.5 374 68.4
Prupe.1G509000 Prunus persica HOM05D005261 ORTHO05D006180 1.7e-144 516.5 355 73.2
Manes.02G212400 Manihot esculenta HOM05D005261 ORTHO05D006180 1.6e-142 510.0 372 69.1
MD08G1174900 Malus domestica HOM05D005261 ORTHO05D006180 2.0e-142 509.6 369 70.5
Haze_00548 Corylus avellana HOM05D005261 ORTHO05D006180 2.2e-141 506.1 399 64.7
Sabra02G0072100 Salix brachista HOM05D005261 ORTHO05D006180 2.2e-141 506.1 368 69.0
CsaV3_2G033630 Cucumis sativus L. HOM05D005261 ORTHO05D006180 1.1e-140 503.8 371 69.0
CANSAT54G1848 Cannabis sativa HOM05D005261 ORTHO05D006180 5.5e-140 501.5 361 70.9
MELO3C008135.2 Cucumis melo HOM05D005261 ORTHO05D006180 2.3e-138 496.1 371 68.2
Solyc04g072390.3 Solanum lycopersicum HOM05D005261 ORTHO05D006180 2.3e-138 496.1 371 68.5
DCAR_023858 Daucus carota HOM05D005261 ORTHO05D006180 3.0e-138 495.7 365 69.3
Duzib041G0715 Durio zibethinus HOM05D005261 ORTHO05D006180 6.8e-138 494.6 364 67.6
Sed0017821 Sechium edule HOM05D005261 ORTHO05D006180 6.8e-138 494.6 371 67.1
ClCG11G007980 Citrullus lanatus HOM05D005261 ORTHO05D006180 5.7e-137 491.5 397 64.7
Nitab4.5_0001915g0120 Nicotiana tabacum HOM05D005261 ORTHO05D006180 5.7e-137 491.5 356 69.4
Nitab4.5_0002561g0060 Nicotiana tabacum HOM05D005261 ORTHO05D006180 5.7e-137 491.5 355 69.9
Gohir.A06G039700 Gossypium hirsutum HOM05D005261 ORTHO05D006180 1.7e-136 490.0 373 65.1
Nitab4.5_0003428g0020 Nicotiana tabacum HOM05D005261 ORTHO05D006180 1.7e-136 490.0 355 69.3
CAN.G617.12 Capsicum annuum HOM05D005261 ORTHO05D006180 4.8e-136 488.4 371 68.2
Eucgr.H00927 Eucalyptus grandis HOM05D005261 ORTHO05D006180 6.3e-136 488.0 372 65.1
Sopen04g028560 Solanum pennellii HOM05D005261 ORTHO05D006180 1.4e-135 486.9 355 69.6
VMungo1309G2277 Vigna mungo HOM05D005261 ORTHO05D006180 2.4e-135 486.1 365 67.1
Cc10_g05970 Coffea canephora HOM05D005261 ORTHO05D006180 2.0e-134 483.0 356 69.9
PGR042G1365 Punica granatum HOM05D005261 ORTHO05D006180 7.7e-134 481.1 372 67.2
EL10Ac1g01697 Beta vulgaris HOM05D005261 ORTHO05D006180 1.3e-133 480.3 353 67.7
TWI56G1213 Tripterygium wilfordii HOM05D005261 ORTHO05D006180 2.9e-133 479.2 331 71.9
Glyma.06G107100 Glycine max HOM05D005261 ORTHO05D006180 5.5e-132 474.9 370 64.3
Phvul.009G027100 Phaseolus vulgaris HOM05D005261 ORTHO05D006180 9.5e-132 474.2 365 64.9
HanXRQChr02g0043751 Helianthus annuus HOM05D005261 ORTHO05D006180 1.2e-131 473.8 324 70.1
TAR625G1239 Trochodendron aralioides HOM05D005261 ORTHO05D006180 1.6e-131 473.4 341 71.0
THA.LOC104813129 Tarenaya hassleriana HOM05D005261 ORTHO05D006180 3.6e-131 472.2 357 66.4
MSTRG.24247 Avicennia marina HOM05D005261 ORTHO05D006180 8.0e-131 471.1 316 73.1
Lj1g0011675 Lotus japonicus HOM05D005261 ORTHO05D006180 1.4e-130 470.3 355 65.6
Aqoxy6G00521 Aquilegia oxysepala HOM05D005261 ORTHO05D006180 2.3e-130 469.5 361 64.8
Glyma.04G107300 Glycine max HOM05D005261 ORTHO05D006180 8.9e-130 467.6 369 63.7
TPR.G16249 Trifolium pratense HOM05D005261 ORTHO05D006180 1.5e-129 466.8 367 66.2
Ah.03g139490 Amaranthus hybridus HOM05D005261 ORTHO05D006180 9.8e-129 464.2 355 64.8
Nn5g28978 Nelumbo nucifera HOM05D005261 ORTHO05D006180 9.8e-129 464.2 337 69.7
PSO447G0033 Papaver somniferum HOM05D005261 ORTHO05D006180 9.8e-129 464.2 350 66.9
MBI02_g34268_MAGBIO Magnolia biondii HOM05D005261 ORTHO05D006180 2.8e-128 462.6 344 68.3
PSO541G3947 Papaver somniferum HOM05D005261 ORTHO05D006180 4.9e-128 461.8 347 66.0
PSO675G0151 Papaver somniferum HOM05D005261 ORTHO05D006180 6.3e-128 461.5 347 66.0
Sc14g0001090 Simmondsia chinensis HOM05D005261 ORTHO05D006180 1.8e-127 459.9 332 69.9
BcaC02g11530 Brassica carinata HOM05D005261 ORTHO05D006180 3.5e-126 455.7 333 67.6
Ca_26314_v3 Cicer arietinum L. HOM05D005261 ORTHO05D006180 3.5e-126 455.7 311 72.0
unitig_22.g6794 Utricularia gibba HOM05D005261 ORTHO05D006180 3.5e-126 455.7 367 63.2
Aa31LG6G9000 Aethionema arabicum HOM05D005261 ORTHO05D006180 4.5e-126 455.3 390 60.5
arahy.Tifrunner.gnm1.ann1.S5D643 Arachis hypogaea HOM05D005261 ORTHO05D006180 1.0e-125 454.1 375 63.7
Thhalv10004311m.g Eutrema salsugineum HOM05D005261 ORTHO05D006180 1.7e-125 453.4 378 61.9
arahy.Tifrunner.gnm1.ann1.232HHD Arachis hypogaea HOM05D005261 ORTHO05D006180 5.0e-125 451.8 365 64.9
Medtr2g460880 Medicago truncatula HOM05D005261 ORTHO05D006180 5.0e-125 451.8 317 70.7
CARHR034970 Cardamine hirsuta HOM05D005261 ORTHO05D006180 1.1e-124 450.7 364 63.7
Lsat_1_v5_gn_1_3980 Lactuca sativa HOM05D005261 ORTHO05D006180 1.5e-124 450.3 332 67.5
Os02g0750500 Oryza sativa ssp. japonica HOM05D005261 ORTHO05D006180 2.5e-124 449.5 338 65.4
Psat5g135960 Pisum sativum HOM05D005261 ORTHO05D006180 2.5e-124 449.5 323 70.0
Sp1g30710 Schrenkiella parvula HOM05D005261 ORTHO05D006180 2.5e-124 449.5 374 61.2
BraA05t20051Z Brassica rapa HOM05D005261 ORTHO05D006180 4.3e-124 448.7 318 68.9
CDE02G3063 Ceratophyllum demersum HOM05D005261 ORTHO05D006180 1.6e-123 446.8 335 66.3
SGA_v2.0_scaffold12G05968 Striga asiatica HOM05D005261 ORTHO05D006180 1.6e-123 446.8 325 68.3
BcaB03g13642 Brassica carinata HOM05D005261 ORTHO05D006180 2.1e-123 446.4 351 64.7
C04p14350 Brassica napus HOM05D005261 ORTHO05D006180 2.8e-123 446.0 329 67.2
Migut.N03156 Erythranthe guttata HOM05D005261 ORTHO05D006180 1.0e-122 444.1 316 69.9
A08p07950 Brassica napus HOM05D005261 ORTHO05D006180 1.4e-122 443.7 345 64.9
BraA08t32817Z Brassica rapa HOM05D005261 ORTHO05D006180 1.4e-122 443.7 345 64.9
Potri.002G091300 Populus trichocarpa HOM05D005261 ORTHO05D006180 1.4e-122 443.7 392 60.2
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 4.0e-122 442.2 314 68.8
BcaC07g37496 Brassica carinata HOM05D005261 ORTHO05D006180 6.8e-122 441.4 337 65.3
BolC8t47816H Brassica oleracea HOM05D005261 ORTHO05D006180 6.8e-122 441.4 337 65.3
AT1G36310 Arabidopsis thaliana HOM05D005261 ORTHO05D006180 3.4e-121 439.1 375 60.8
Carub.0001s3363 Capsella rubella HOM05D005261 ORTHO05D006180 7.5e-121 438.0 350 63.7
AL1G50930 Arabidopsis lyrata HOM05D005261 ORTHO05D006180 1.1e-119 434.1 376 60.6
SHI24797 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-119 434.1 356 62.4
Zm00001eb255040 Zea mays HOM05D005261 ORTHO05D006180 1.1e-119 434.1 328 66.5
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 1.9e-119 433.3 324 67.0
HPP92_001925 Vanilla planifolia HOM05D005261 ORTHO05D006180 2.7e-118 429.5 315 65.7
Peaxi162Scf00756g00436 Petunia axillaris HOM05D005261 ORTHO05D006180 1.3e-117 427.2 324 67.6
SEGI_02326 Sequoiadendron giganteum HOM05D005261 ORTHO05D006180 1.7e-117 426.8 323 64.7
AUR62022337 Chenopodium quinoa HOM05D005261 ORTHO05D006180 2.5e-116 422.9 317 66.6
Oeu020872.1 Olea europaea HOM05D005261 ORTHO05D006180 5.6e-116 421.8 331 64.7
AUR62036786 Chenopodium quinoa HOM05D005261 ORTHO05D006180 7.3e-116 421.4 338 63.3
AUR62033704 Chenopodium quinoa HOM05D005261 ORTHO05D006180 1.6e-115 420.2 338 62.7
AUR62034370 Chenopodium quinoa HOM05D005261 ORTHO05D006180 6.8e-114 414.8 298 69.1
ATR0564G365 Amborella trichopoda HOM05D005261 ORTHO05D006180 8.9e-114 414.5 320 67.2
AagrBONN_evm.TU.Sc2ySwM_228.1177 Anthoceros agrestis HOM05D005261 ORTHO05D006180 1.5e-108 397.1 324 61.4
Mapoly0189s0001 Marchantia polymorpha HOM05D005261 ORTHO05D006180 1.2e-107 394.0 318 60.1
SHI53236 Sapria himalayana HOM05D005261 ORTHO05D006180 3.1e-106 389.4 336 59.2
Pp3c8_16200 Physcomitrium patens HOM05D005261 ORTHO05D006180 1.2e-105 387.5 336 56.5
SMO361G0461 Selaginella moellendorffii HOM05D005261 ORTHO05D006180 3.7e-104 382.5 309 60.5
Hma1.2p1_0276F.1_g111370 Hydrangea macrophylla HOM05D005261 ORTHO05D006180 1.9e-103 380.2 248 76.6
SalBow8G1448 Salvia bowleyana HOM05D005261 ORTHO05D006180 7.8e-102 374.8 368 54.9
SHI35611 Sapria himalayana HOM05D005261 ORTHO05D006180 6.0e-94 348.6 306 59.8
Lj3C845T19 Lonicera japonica HOM05D005261 ORTHO05D006180 6.2e-91 338.6 208 79.8
Lalb_Chr17g0344051 Lupinus albus HOM05D005261 ORTHO05D006180 4.4e-89 332.4 236 67.4
ECA247G1584 Erigeron canadensis HOM05D000230 ORTHO05D006180 1.1e-84 317.8 245 63.7
CBR_g15981 Chara braunii HOM05D005261 ORTHO05D006180 1.8e-77 293.9 373 44.8
COL.COLO4_16503 Corchorus olitorius HOM05D005261 ORTHO05D006180 1.4e-66 257.7 192 67.7
SHI20620 Sapria himalayana HOM05D005261 ORTHO05D006180 5.8e-65 252.3 277 50.9
SHI34852 Sapria himalayana HOM05D005261 ORTHO05D006180 1.7e-64 250.8 329 46.8
SHI34844 Sapria himalayana HOM05D005261 ORTHO05D006180 4.9e-64 249.2 325 45.8
Rhsim10G0118000 Rhododendron simsii HOM05D005261 ORTHO05D006180 2.5e-63 246.9 202 66.3
SHI46120 Sapria himalayana HOM05D005261 ORTHO05D006180 2.0e-52 210.7 178 61.8
SHI43763 Sapria himalayana HOM05D005261 ORTHO05D006180 2.5e-52 210.3 165 64.8
PRCOL_00005291 Prasinoderma coloniale HOM05D005261 ORTHO05D006180 1.3e-51 208.0 367 39.2
SHI32317 Sapria himalayana HOM05D005261 ORTHO05D006180 1.0e-48 198.4 337 37.4
SHI53472 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-47 194.9 167 61.7
Oeu017307.1 Olea europaea HOM05D005261 ORTHO05D006180 1.1e-44 184.9 140 66.4
SHI52923 Sapria himalayana HOM05D005261 ORTHO05D006180 2.6e-44 183.7 167 59.9
Rhsim13G0124000 Rhododendron simsii HOM05D005261 ORTHO05D006180 1.9e-39 167.5 184 58.2
SHI49977 Sapria himalayana HOM05D005261 ORTHO05D006180 5.5e-39 166.0 169 51.5
SHI54958 Sapria himalayana HOM05D005261 ORTHO05D006180 9.4e-39 165.2 112 73.2
Cre04.g224002 Chlamydomonas reinhardtii HOM05D005261 ORTHO05D006180 5.2e-37 159.5 167 48.5
SHI53189 Sapria himalayana HOM05D005261 ORTHO05D006180 2.4e-34 150.6 167 55.1
MCO14G461 Micromonas commoda HOM05D005261 ORTHO05D006180 4.7e-30 136.3 339 29.8
SHI49044 Sapria himalayana HOM05D005261 ORTHO05D006180 8.8e-29 132.1 127 57.5
Lj3A845G93 Lonicera japonica HOM05D005261 ORTHO05D006180 8.5e-24 115.5 59 89.8
SHI51067 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-23 115.2 139 48.9
PGSC0003DMG401027564 Solanum tuberosum HOM05D001663 ORTHO05D003186 1.2e-22 111.7 76 71.1
SHI52089 Sapria himalayana HOM05D005261 ORTHO05D006180 4.7e-22 109.8 140 47.1
SHI51747 Sapria himalayana HOM05D005261 ORTHO05D006180 6.8e-21 105.9 140 45.7
SHI41608 Sapria himalayana HOM05D005261 ORTHO05D006180 1.1e-18 98.6 151 42.4
SHI50342 Sapria himalayana HOM05D005261 ORTHO05D006180 1.2e-09 68.6 62 59.7
ClCG11G007990 Citrullus lanatus HOM05D005261 ORTHO05D006180 1.6e-06 58.2 31 83.9


User provided reference genes

Program Settings