Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 4.3e-270 934.1 480 100.0
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 2.6e-267 924.9 480 99.6
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 3.8e-242 841.3 519 85.7
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 9.7e-230 800.0 481 85.9
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.7e-226 789.3 483 85.1
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 7.2e-217 757.3 481 81.1
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 2.7e-216 755.4 480 80.4
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 4.7e-216 754.6 483 80.5
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 6.7e-215 750.7 486 80.5
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 8.8e-215 750.4 480 79.4
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 1.5e-214 749.6 482 80.5
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 2.8e-213 745.3 483 78.9
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 3.7e-213 745.0 483 79.1
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 2.4e-212 742.3 483 78.5
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 7.7e-211 737.3 482 78.0
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 2.2e-210 735.7 483 78.9
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.8e-210 734.9 482 78.0
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 8.5e-210 733.8 478 79.3
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 1.1e-209 733.4 483 77.6
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 5.5e-209 731.1 481 79.0
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.2e-208 729.9 481 77.3
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 1.2e-208 729.9 479 79.7
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 3.6e-208 728.4 483 77.4
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 6.1e-208 727.6 478 79.3
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 6.1e-208 727.6 479 78.7
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.8e-207 726.1 481 78.4
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 3.0e-207 725.3 478 78.9
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 1.5e-206 723.0 483 76.0
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.5e-206 723.0 481 77.1
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 2.0e-206 722.6 481 77.1
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.4e-206 720.7 483 76.6
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 9.7e-206 720.3 481 76.7
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 2.2e-205 719.2 487 75.8
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 2.8e-205 718.8 475 77.7
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 4.8e-205 718.0 487 76.2
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 6.3e-205 717.6 487 75.6
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.1e-204 716.8 483 77.0
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 5.3e-204 714.5 482 77.2
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 7.0e-204 714.1 480 76.9
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 9.1e-204 713.8 479 77.0
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 1.6e-203 713.0 487 75.4
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 2.6e-203 712.2 474 77.4
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 4.5e-203 711.4 497 74.2
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.7e-202 709.5 478 78.2
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 6.5e-202 707.6 482 75.7
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 8.5e-202 707.2 480 76.5
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 2.5e-201 705.7 480 76.7
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 9.4e-201 703.7 482 75.7
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 4.7e-200 701.4 481 77.3
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 8.0e-200 700.7 478 76.2
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 1.4e-199 699.9 480 76.5
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 3.0e-199 698.7 479 75.8
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 8.8e-199 697.2 478 76.8
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.6e-198 695.7 480 74.0
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.7e-198 694.5 483 74.5
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 9.7e-198 693.7 474 75.3
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 1.7e-197 693.0 511 71.6
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 4.8e-197 691.4 481 73.2
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 3.1e-196 688.7 482 75.1
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 7.7e-195 684.1 480 72.9
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 1.1e-193 680.2 480 72.9
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 9.4e-193 677.2 535 68.4
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 3.6e-192 675.2 483 72.9
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 4.7e-192 674.9 481 74.2
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 4.7e-192 674.9 479 72.4
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 6.8e-191 671.0 482 74.3
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 8.8e-191 670.6 479 74.1
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 9.8e-190 667.2 445 80.0
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 2.2e-189 666.0 482 72.4
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 1.1e-188 663.7 480 70.2
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 9.1e-188 660.6 479 73.3
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 4.5e-187 658.3 481 72.3
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 6.6e-186 654.4 424 78.8
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.5e-185 653.3 380 88.9
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 1.9e-185 652.9 488 71.1
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 2.8e-184 649.0 483 71.8
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 8.9e-183 644.0 479 71.0
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 1.2e-182 643.7 482 71.0
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 1.2e-182 643.7 482 71.0
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 1.2e-182 643.7 482 71.0
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.5e-182 643.3 479 70.6
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 2.6e-182 642.5 413 80.4
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 9.8e-182 640.6 478 70.9
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 1.1e-180 637.1 479 70.1
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 7.0e-180 634.4 481 72.1
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 7.8e-179 630.9 481 70.3
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 1.1e-177 627.1 475 72.4
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 1.9e-177 626.3 471 70.1
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 2.1e-176 622.9 478 69.2
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 7.0e-172 607.8 481 67.2
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 2.7e-171 605.9 482 67.0
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.7e-170 603.2 426 72.8
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.7e-168 595.1 480 66.7
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 1.4e-167 593.6 471 66.9
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 1.2e-166 590.5 497 64.2
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 4.4e-166 588.6 480 67.5
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.3e-165 587.0 433 73.4
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 1.4e-164 583.6 376 80.9
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 7.3e-161 571.2 576 57.6
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 2.6e-158 562.8 382 74.9
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 6.4e-157 558.1 337 85.2
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 1.2e-155 553.9 386 72.8
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 3.8e-149 532.3 484 59.1
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 1.1e-148 530.8 483 60.2
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 5.1e-138 495.4 314 80.6
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 4.0e-135 485.7 812 40.6
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.8e-127 460.3 317 75.4
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 5.3e-127 458.8 348 68.1
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 2.3e-122 443.4 483 52.8
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.6e-120 437.2 379 59.6
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 6.1e-115 418.7 454 53.5
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 3.0e-114 416.4 454 52.9
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 5.7e-113 412.1 452 52.2
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 1.3e-109 401.0 454 52.2
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 3.0e-106 389.8 455 50.5
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 3.0e-106 389.8 453 51.2
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.5e-105 387.5 473 49.5
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.7e-104 384.0 455 49.9
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 5.0e-101 372.5 455 49.2
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 6.5e-101 372.1 446 47.8
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 5.1e-98 362.5 372 53.8
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 5.1e-98 362.5 410 49.8
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 1.1e-97 361.3 371 53.4
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 9.7e-97 358.2 227 79.7
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 1.3e-96 357.8 247 74.9
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 1.8e-95 354.0 238 75.6
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 7.0e-95 352.1 407 50.1
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.0e-90 338.2 254 72.0
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 3.7e-88 329.7 452 46.5
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 5.9e-86 322.4 490 42.0
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 1.0e-69 268.5 489 38.2
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 4.7e-59 233.0 175 71.4
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 8.3e-56 222.2 310 43.5
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 2.1e-51 207.6 206 54.9
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 3.9e-45 186.8 203 49.8
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 2.9e-40 170.6 446 31.6
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 3.7e-40 170.2 106 79.2
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 2.3e-37 161.0 102 79.4
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 2.8e-35 154.1 516 29.1
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 3.6e-19 100.5 91 54.9
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 1.2e-14 85.5 63 73.0
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 3.9e-13 80.5 143 32.2
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 7.6e-09 66.2 81 44.4
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 1.9e-07 61.6 141 37.6


User provided reference genes

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