Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0194500 Rhododendron simsii HOM05D035787 ORTHO05D004678 4.9e-111 404.4 201 100.0
Rhsim07G0178900 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.9e-63 245.7 204 65.2
RhsimUnG0080000 Rhododendron simsii HOM05D035787 ORTHO05D004678 2.1e-61 239.6 204 64.2
Rhsim09G0027200 Rhododendron simsii HOM05D041434 ORTHO05D004678 7.1e-25 118.2 190 40.5
Rhsim09G0027400 Rhododendron simsii HOM05D008235 ORTHO05D009358 6.2e-21 105.1 173 41.6
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 9.9e-19 97.8 158 37.3
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 6.0e-16 88.6 159 37.1
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 7.8e-16 88.2 163 36.2
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.3e-15 87.4 158 38.0
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 3.0e-15 86.3 158 36.7
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.0e-15 86.3 158 36.7
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 3.0e-15 86.3 205 31.7
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.1e-15 85.5 158 37.3
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 8.7e-15 84.7 206 35.0
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.5e-14 84.0 144 38.2
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.9e-14 83.6 158 36.1
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.3e-14 82.8 158 38.0
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.3e-14 82.4 163 35.6
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 5.6e-14 82.0 158 36.7
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.3e-13 80.9 154 35.1
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 1.3e-13 80.9 176 31.2
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 2.8e-13 79.7 190 32.6
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 6.2e-13 78.6 156 33.3
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.1e-12 77.8 207 30.9
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.1e-12 77.8 159 34.6
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 2.4e-12 76.6 147 34.7
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 2.4e-12 76.6 156 34.6
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 2.4e-12 76.6 159 34.0
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 2.4e-12 76.6 159 34.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 3.1e-12 76.3 147 36.7
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 4.0e-12 75.9 156 32.1
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 2.0e-11 73.6 168 35.1
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.6e-11 73.2 143 35.0
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 4.5e-11 72.4 172 32.6
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 4.5e-11 72.4 140 35.7
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 5.8e-11 72.0 182 31.9
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 7.6e-11 71.6 157 32.5
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 7.6e-11 71.6 185 33.5
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.7e-10 70.5 174 32.2
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.7e-10 70.5 152 31.6
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.7e-10 70.5 162 31.5
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.8e-10 69.3 140 34.3
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 4.9e-10 68.9 157 32.5
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 4.9e-10 68.9 171 29.2
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 4.9e-10 68.9 142 31.7
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 4.9e-10 68.9 162 30.9
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 6.4e-10 68.6 183 32.2
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 6.4e-10 68.6 161 31.7
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 6.4e-10 68.6 203 29.6
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 8.4e-10 68.2 137 32.8
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.4e-09 67.4 182 31.3
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.9e-09 67.0 182 31.3
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.9e-09 67.0 156 30.8
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.4e-09 66.6 154 29.2
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 3.2e-09 66.2 167 29.9
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 4.2e-09 65.9 156 30.1
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 7.1e-09 65.1 146 30.8
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 9.3e-09 64.7 185 29.7
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.6e-08 63.9 133 31.6
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 7.9e-08 61.6 162 27.2
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.0e-07 61.2 130 33.1
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.0e-07 61.2 150 30.7
RhsimUnG0195200 Rhododendron simsii HOM05D041434 ORTHO05D339788 1.8e-07 60.5 139 32.4
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 1.8e-07 60.5 118 35.6
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.3e-07 60.1 130 32.3
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 3.0e-07 59.7 202 29.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 3.9e-07 59.3 150 30.7
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 5.1e-07 58.9 165 30.3
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 1.1e-06 57.8 145 28.3
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 1.1e-06 57.8 118 30.5
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.5e-06 57.4 130 30.0
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 7.4e-06 55.1 142 27.5
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 9.6e-06 54.7 119 28.6


User provided reference genes

Program Settings