Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 5.7e-169 597.4 289 100.0
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 6.4e-136 487.6 290 81.0
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 2.3e-133 479.2 283 80.2
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 2.5e-132 475.7 289 78.9
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 1.2e-129 466.8 283 78.8
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 6.0e-126 454.5 286 76.9
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.4e-122 443.4 282 75.5
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 1.6e-118 429.9 289 72.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 5.1e-117 424.9 285 73.0
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 2.5e-116 422.5 283 74.2
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 3.3e-116 422.2 285 72.6
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 4.8e-115 418.3 284 71.5
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 4.0e-114 415.2 277 72.6
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 4.0e-114 415.2 282 70.2
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 6.9e-114 414.5 293 68.9
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 1.2e-113 413.7 282 69.9
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.5e-113 413.3 285 71.6
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 2.6e-113 412.5 284 70.1
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 4.5e-113 411.8 292 66.8
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 9.9e-113 410.6 282 69.9
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.7e-112 409.8 284 69.7
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 2.9e-112 409.1 295 68.5
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 3.8e-112 408.7 285 70.5
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 4.9e-112 408.3 284 69.7
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.1e-111 407.1 284 69.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 4.2e-111 405.2 265 72.1
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 5.4e-111 404.8 282 68.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 7.1e-111 404.4 289 68.9
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 9.3e-111 404.1 284 67.6
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 9.3e-111 404.1 285 68.1
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.2e-110 403.7 293 67.9
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 2.1e-110 402.9 286 68.5
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 4.6e-110 401.7 292 67.1
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 7.9e-110 401.0 284 67.6
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 7.9e-110 401.0 297 67.7
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.8e-109 399.8 280 68.2
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.8e-109 399.8 288 68.1
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 2.3e-109 399.4 273 70.3
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.0e-109 399.1 285 69.5
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.9e-109 398.7 284 68.7
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 1.5e-108 396.7 266 71.1
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 3.3e-108 395.6 285 66.3
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 9.6e-108 394.0 292 65.4
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.3e-107 393.7 281 67.6
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.8e-107 392.5 298 64.4
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.8e-106 389.8 284 66.2
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 1.8e-106 389.8 285 64.9
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.8e-106 389.8 285 64.9
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 3.1e-106 389.0 292 66.8
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 5.3e-106 388.3 228 80.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 1.5e-105 386.7 285 66.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 2.0e-105 386.3 293 64.2
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 4.5e-105 385.2 294 64.3
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.2e-104 382.9 286 64.7
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 4.9e-104 381.7 289 64.4
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 6.4e-104 381.3 280 65.0
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 6.4e-104 381.3 280 66.1
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 1.1e-103 380.6 246 74.0
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 1.9e-103 379.8 254 71.3
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 3.2e-103 379.0 284 65.8
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 9.3e-103 377.5 280 65.4
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 9.3e-103 377.5 280 65.7
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 1.2e-102 377.1 279 64.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.6e-102 376.7 266 66.5
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 8.7e-101 370.9 294 61.9
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 1.5e-100 370.2 275 65.1
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 1.9e-100 369.8 289 62.6
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 4.3e-100 368.6 266 65.8
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 5.6e-100 368.2 281 64.8
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 7.4e-100 367.9 287 62.7
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 9.6e-100 367.5 282 63.5
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 1.3e-99 367.1 281 64.1
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 6.2e-99 364.8 285 64.6
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 1.4e-98 363.6 263 67.3
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 5.3e-98 361.7 279 62.0
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 6.9e-98 361.3 265 66.8
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 1.2e-97 360.5 245 69.0
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 4.5e-97 358.6 279 63.1
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 6.5e-96 354.8 256 67.2
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 1.4e-95 353.6 313 57.8
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 7.1e-95 351.3 282 61.7
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 3.5e-94 349.0 265 63.4
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 7.9e-94 347.8 292 60.6
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 5.7e-92 341.7 245 67.3
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 1.1e-90 337.4 258 62.4
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 3.1e-90 335.9 273 58.6
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 6.9e-90 334.7 263 60.1
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 3.4e-89 332.4 284 57.7
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 5.5e-87 325.1 276 60.1
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 9.4e-87 324.3 233 65.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 3.3e-84 315.8 240 60.4
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 4.1e-82 308.9 257 58.8
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 6.7e-77 291.6 269 50.6
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 3.8e-72 275.8 263 51.7
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 5.0e-72 275.4 218 66.1
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 1.4e-71 273.9 265 50.9
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 4.2e-71 272.3 266 50.8
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.2e-70 270.8 263 50.2
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.2e-70 270.8 256 50.0
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 2.3e-69 266.5 257 51.4
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 3.0e-69 266.2 265 50.6
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 3.0e-69 266.2 265 50.6
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 5.2e-69 265.4 255 51.8
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-68 263.8 264 49.2
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 4.4e-68 262.3 256 50.4
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 2.2e-67 260.0 256 49.2
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-67 260.0 272 49.6
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.8e-67 259.6 273 49.8
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 6.3e-67 258.5 267 48.7
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.1e-66 257.7 268 48.1
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.3e-66 255.4 264 49.2
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 9.1e-66 254.6 271 47.2
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 3.2e-63 246.1 282 50.0
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 1.0e-61 241.1 275 45.1
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 7.5e-60 235.0 265 43.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 6.6e-48 195.3 269 38.3
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.1e-47 194.5 231 41.1
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 4.7e-46 189.1 266 39.1
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 6.1e-46 188.7 197 45.2
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 1.0e-45 188.0 264 39.4
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 9.8e-44 181.4 225 42.2
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 3.2e-42 176.4 210 49.5
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 1.6e-38 164.1 196 47.4
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.4e-37 161.0 195 43.6
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 1.5e-36 157.5 280 39.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 2.6e-36 156.8 179 46.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 3.4e-36 156.4 173 46.8
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 1.4e-34 151.0 170 45.3
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 2.4e-34 150.2 173 46.8
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 5.4e-34 149.1 242 40.5
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-33 147.5 242 38.8
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 2.0e-33 147.1 170 44.1
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 3.5e-33 146.4 170 45.3
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.9e-31 140.6 194 40.7
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 2.1e-30 137.1 142 47.9
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.8e-30 136.7 273 35.5
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.5e-28 128.6 140 42.9
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 2.2e-27 127.1 142 47.2
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 2.5e-23 113.6 188 35.6
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-22 110.5 173 38.7
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 2.1e-22 110.5 173 38.7
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 1.8e-21 107.5 205 35.1
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 4.6e-17 92.8 93 52.7
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 4.3e-15 86.3 64 57.8
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 4.3e-15 86.3 64 57.8
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 6.2e-14 82.4 116 41.4
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 8.1e-14 82.0 100 49.0
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 5.2e-13 79.3 68 55.9
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 2.1e-06 57.4 151 28.5


User provided reference genes

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