Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0188700 Rhododendron simsii HOM05D001406 ORTHO05D000023 2.1e-94 349.0 170 100.0
vmacro20547 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 1.7e-27 126.7 154 46.8
Rhsim01G0073200 Rhododendron simsii HOM05D001406 ORTHO05D002467 3.5e-25 119.0 154 44.2
Rhsim01G0073900 Rhododendron simsii HOM05D001406 ORTHO05D002467 3.5e-25 119.0 154 44.2
CSS0022258 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 6.2e-22 108.2 150 42.0
CSS0043323 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 6.2e-22 108.2 150 42.0
Rhsim07G0188800 Rhododendron simsii HOM05D001406 ORTHO05D002467 5.2e-21 105.1 119 49.6
Rhsim03G0247800 Rhododendron simsii HOM05D001406 ORTHO05D002467 1.5e-20 103.6 154 41.6
Dinv36534 Davidia involucrata HOM05D001406 ORTHO05D002467 4.4e-20 102.1 156 39.1
QL02p088143 Quercus lobata HOM05D001406 ORTHO05D002467 5.8e-20 101.7 149 37.6
CSS0015980 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 1.7e-19 100.1 152 40.1
CSS0015754 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D002467 3.8e-19 99.0 152 40.1
COL.COLO4_15642 Corchorus olitorius HOM05D001406 ORTHO05D002467 1.1e-18 97.4 151 37.7
Peaxi162Scf00256g00024 Petunia axillaris HOM05D001406 ORTHO05D002467 1.1e-18 97.4 151 37.7
Atru.chr7.1222 Acer truncatum HOM05D001406 ORTHO05D002467 1.4e-18 97.1 107 44.9
Manes.06G049100 Manihot esculenta HOM05D001406 ORTHO05D002467 2.4e-18 96.3 107 43.9
PGR142G4309 Punica granatum HOM05D001406 ORTHO05D002467 2.4e-18 96.3 153 37.3
vmacro06126 Vaccinium macrocarpon HOM05D001406 ORTHO05D002467 3.2e-18 95.9 152 40.1
Duzib168G1131 Durio zibethinus HOM05D001406 ORTHO05D002467 5.4e-18 95.1 154 37.0
Duzib150G1321 Durio zibethinus HOM05D001406 ORTHO05D002467 7.1e-18 94.7 154 36.4
TAR636G2776 Trochodendron aralioides HOM05D001406 ORTHO05D002467 1.2e-17 94.0 150 35.3
Sabra06G0121700 Salix brachista HOM05D001406 ORTHO05D002467 1.6e-17 93.6 149 38.9
Thecc.09G124900 Theobroma cacao HOM05D001406 ORTHO05D002467 1.6e-17 93.6 154 35.7
Cfa003360 Carpinus fangiana HOM05D001406 ORTHO05D002467 2.1e-17 93.2 154 36.4
DCAR_009194 Daucus carota HOM05D001406 ORTHO05D002467 2.7e-17 92.8 150 37.3
FAN19G3152 Fragaria x ananassa HOM05D001406 ORTHO05D002467 3.5e-17 92.4 107 41.1
Eucgr.C01157 Eucalyptus grandis HOM05D001406 ORTHO05D002467 4.6e-17 92.0 153 35.9
FvH4_1g03490 Fragaria vesca HOM05D001406 ORTHO05D002467 4.6e-17 92.0 107 41.1
Manes.14G131700 Manihot esculenta HOM05D001406 ORTHO05D002467 4.6e-17 92.0 155 36.1
Oeu018465.1 Olea europaea HOM05D001406 ORTHO05D002467 4.6e-17 92.0 152 34.2
Actinidia26396 Actinidia chinensis HOM05D001406 ORTHO05D002467 7.8e-17 91.3 148 37.8
Phvul.009G197400 Phaseolus vulgaris HOM05D001406 ORTHO05D002467 7.8e-17 91.3 154 37.0
FAN23G0167 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.3e-16 90.5 107 40.2
FAN28G0695 Fragaria x ananassa HOM05D001406 ORTHO05D002467 1.3e-16 90.5 107 40.2
BcaC07g40054 Brassica carinata HOM05D001406 ORTHO05D002467 1.7e-16 90.1 128 37.5
C08p32730 Brassica napus HOM05D001406 ORTHO05D002467 1.7e-16 90.1 128 37.5
BolC8t50884H Brassica oleracea HOM05D001406 ORTHO05D002467 1.7e-16 90.1 128 37.5
CiPaw.04G170400 Carya illinoinensis HOM05D001406 ORTHO05D002467 2.3e-16 89.7 110 40.9
Sed0020689 Sechium edule HOM05D001406 ORTHO05D002467 2.3e-16 89.7 105 41.9
Ciclev10008750m.g Citrus clementina HOM05D001406 ORTHO05D002467 3.0e-16 89.4 105 41.0
Ciclev10017189m.g Citrus clementina HOM05D001406 ORTHO05D002467 3.0e-16 89.4 105 41.0
Hma1.2p1_0018F.1_g012510 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 3.9e-16 89.0 159 36.5
Sopen05g015780 Solanum pennellii HOM05D001406 ORTHO05D002467 3.9e-16 89.0 150 34.7
PGSC0003DMG400014967 Solanum tuberosum HOM05D001406 ORTHO05D002467 3.9e-16 89.0 150 34.7
AT3G57340 Arabidopsis thaliana HOM05D001406 ORTHO05D002467 5.1e-16 88.6 129 38.0
Cpa.g.sc75.45 Carica papaya HOM05D001406 ORTHO05D002467 5.1e-16 88.6 147 34.7
FAN26G0469 Fragaria x ananassa HOM05D001406 ORTHO05D002467 5.1e-16 88.6 107 39.3
FAN26G3043 Fragaria x ananassa HOM05D001406 ORTHO05D002467 5.1e-16 88.6 107 39.3
RcHm_v2.0_Chr2g0088701 Rosa chinensis HOM05D001406 ORTHO05D002467 5.1e-16 88.6 107 40.2
CAN.G975.5 Capsicum annuum HOM05D001406 ORTHO05D002467 6.6e-16 88.2 110 38.2
CARHR167530 Cardamine hirsuta HOM05D001406 ORTHO05D002467 6.6e-16 88.2 105 40.0
MELO3C010356.2 Cucumis melo HOM05D001406 ORTHO05D002467 6.6e-16 88.2 105 39.0
Gohir.A13G199500 Gossypium hirsutum HOM05D001406 ORTHO05D002467 6.6e-16 88.2 151 34.4
Gohir.D13G205000 Gossypium hirsutum HOM05D001406 ORTHO05D002467 6.6e-16 88.2 151 34.4
Gorai.013G233900 Gossypium raimondii HOM05D001406 ORTHO05D002467 6.6e-16 88.2 151 34.4
Solyc05g018610.3 Solanum lycopersicum HOM05D001406 ORTHO05D002467 6.6e-16 88.2 150 34.0
DCAR_014879 Daucus carota HOM05D001406 ORTHO05D002467 8.7e-16 87.8 154 34.4
Dinv41518 Davidia involucrata HOM05D001406 ORTHO05D002467 8.7e-16 87.8 150 36.7
Lalb_Chr12g0197871 Lupinus albus HOM05D001406 ORTHO05D002467 8.7e-16 87.8 113 36.3
CANSAT11G2034 Cannabis sativa HOM05D001406 ORTHO05D002467 1.1e-15 87.4 108 40.7
Nitab4.5_0001941g0060 Nicotiana tabacum HOM05D001406 ORTHO05D002467 1.1e-15 87.4 110 38.2
TWI63G0689 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 1.1e-15 87.4 157 35.0
CiPaw.04G170600 Carya illinoinensis HOM05D001406 ORTHO05D002467 1.5e-15 87.0 110 40.0
CsaV3_1G029930 Cucumis sativus L. HOM05D001406 ORTHO05D002467 1.5e-15 87.0 105 38.1
Prupe.7G241200 Prunus persica HOM05D001406 ORTHO05D002467 1.5e-15 87.0 148 35.1
VMungo1309G2083 Vigna mungo HOM05D001406 ORTHO05D002467 1.5e-15 87.0 149 35.6
Aqoxy7G03718 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 1.9e-15 86.7 146 33.6
BcaC07g40055 Brassica carinata HOM05D001406 ORTHO05D002467 1.9e-15 86.7 148 34.5
Hma1.2p1_0665F.1_g199020 Hydrangea macrophylla HOM05D001406 ORTHO05D002467 2.5e-15 86.3 147 34.7
AL5G38880 Arabidopsis lyrata HOM05D001406 ORTHO05D002467 3.3e-15 85.9 128 37.5
ClCG06G011010 Citrullus lanatus HOM05D001406 ORTHO05D002467 3.3e-15 85.9 108 38.9
Potri.006G153700 Populus trichocarpa HOM05D001406 ORTHO05D002467 3.3e-15 85.9 149 36.9
Ca_03165_v3 Cicer arietinum L. HOM05D001406 ORTHO05D002467 4.3e-15 85.5 145 35.9
Aa31LG10G12230 Aethionema arabicum HOM05D001406 ORTHO05D002467 5.6e-15 85.1 105 39.0
Migut.G00775 Erythranthe guttata HOM05D001406 ORTHO05D002467 5.6e-15 85.1 156 34.6
Lalb_Chr08g0234471 Lupinus albus HOM05D001406 ORTHO05D002467 5.6e-15 85.1 150 34.0
Sp5g05260 Schrenkiella parvula HOM05D001406 ORTHO05D002467 5.6e-15 85.1 105 40.0
Thecc.09G125000 Theobroma cacao HOM05D001406 ORTHO05D002467 5.6e-15 85.1 91 41.8
MD02G1033900 Malus domestica HOM05D001406 ORTHO05D002467 7.3e-15 84.7 148 32.4
TWI34G0992 Tripterygium wilfordii HOM05D001406 ORTHO05D002467 7.3e-15 84.7 107 42.1
A09p50240 Brassica napus HOM05D001406 ORTHO05D002467 1.3e-14 84.0 105 38.1
BraA09t40474Z Brassica rapa HOM05D001406 ORTHO05D002467 1.3e-14 84.0 105 38.1
ECA240G1205 Erigeron canadensis HOM05D001406 ORTHO05D002467 1.6e-14 83.6 110 36.4
Lsat_1_v5_gn_5_97200 Lactuca sativa HOM05D001406 ORTHO05D002467 1.6e-14 83.6 107 38.3
unitig_37.g12038 Utricularia gibba HOM05D001406 ORTHO05D002467 1.6e-14 83.6 157 34.4
MD15G1174700 Malus domestica HOM05D001406 ORTHO05D002467 2.1e-14 83.2 142 33.8
MSTRG.9792 Avicennia marina HOM05D001406 ORTHO05D002467 2.8e-14 82.8 157 35.0
MELO3C010357.2 Cucumis melo HOM05D001406 ORTHO05D002467 2.8e-14 82.8 110 37.3
THA.LOC104808996 Tarenaya hassleriana HOM05D001406 ORTHO05D002467 2.8e-14 82.8 149 32.2
Sp6g37150 Schrenkiella parvula HOM05D001406 ORTHO05D002467 3.6e-14 82.4 105 36.2
Sed0009507 Sechium edule HOM05D001406 ORTHO05D002467 3.6e-14 82.4 107 35.5
Thhalv10006378m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 4.8e-14 82.0 105 39.0
BcaC06g32284 Brassica carinata HOM05D001406 ORTHO05D002467 6.2e-14 81.6 130 33.1
BcaC06g32351 Brassica carinata HOM05D001406 ORTHO05D002467 6.2e-14 81.6 105 35.2
C09p71080 Brassica napus HOM05D001406 ORTHO05D002467 6.2e-14 81.6 105 35.2
BolC9t59872H Brassica oleracea HOM05D001406 ORTHO05D002467 6.2e-14 81.6 105 35.2
Lalb_Chr13g0301921 Lupinus albus HOM05D001406 ORTHO05D002467 6.2e-14 81.6 142 31.0
Psat1g027760 Pisum sativum HOM05D001406 ORTHO05D002467 6.2e-14 81.6 151 34.4
TAR383G0949 Trochodendron aralioides HOM05D001406 ORTHO05D002467 1.1e-13 80.9 146 34.9
BraA10t45102Z Brassica rapa HOM05D001406 ORTHO05D002467 1.4e-13 80.5 108 35.2
SalBow8G4782 Salvia bowleyana HOM05D001406 ORTHO05D002467 1.4e-13 80.5 150 33.3
arahy.Tifrunner.gnm1.ann1.PHM66I Arachis hypogaea HOM05D001406 ORTHO05D002467 1.8e-13 80.1 148 31.8
BcaNung06180 Brassica carinata HOM05D001406 ORTHO05D002467 2.4e-13 79.7 126 33.3
A10p30620 Brassica napus HOM05D001406 ORTHO05D002467 3.1e-13 79.3 105 35.2
Carub.0005s2419 Capsella rubella HOM05D001406 ORTHO05D002467 3.1e-13 79.3 105 39.0
TPR.G21257 Trifolium pratense HOM05D001406 ORTHO05D002467 3.1e-13 79.3 145 33.1
Thhalv10015797m.g Eutrema salsugineum HOM05D001406 ORTHO05D002467 4.0e-13 79.0 105 35.2
Lsat_1_v5_gn_7_45581 Lactuca sativa HOM05D001406 ORTHO05D002467 4.0e-13 79.0 150 31.3
Zm00001eb342290 Zea mays HOM05D001406 ORTHO05D002467 6.9e-13 78.2 111 36.0
Aqoxy7G02164 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 9.0e-13 77.8 107 33.6
Carub.0006s0465 Capsella rubella HOM05D001406 ORTHO05D002467 1.2e-12 77.4 108 34.3
Glyma.06G217000 Glycine max HOM05D001406 ORTHO05D002467 1.2e-12 77.4 153 33.3
Lalb_Chr07g0178911 Lupinus albus HOM05D001406 ORTHO05D002467 1.2e-12 77.4 158 30.4
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-12 77.4 108 35.2
CDE07G1801 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 1.5e-12 77.0 103 35.9
Glyma.04G148200 Glycine max HOM05D001406 ORTHO05D002467 1.5e-12 77.0 153 34.0
GSVIVG01015518001 Vitis vinifera HOM05D001406 ORTHO05D002467 1.5e-12 77.0 81 42.0
Ciclev10003237m.g Citrus clementina HOM05D001406 ORTHO05D002467 2.0e-12 76.6 71 50.7
HPP92_021813 Vanilla planifolia HOM05D001406 ORTHO05D002467 2.0e-12 76.6 105 35.2
Os01g0556400 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D002467 3.4e-12 75.9 153 33.3
CARHR207530 Cardamine hirsuta HOM05D001406 ORTHO05D002467 5.8e-12 75.1 149 32.9
Thecc.09G125100 Theobroma cacao HOM05D001406 ORTHO05D002467 7.6e-12 74.7 117 35.0
Zm00001eb162560 Zea mays HOM05D001406 ORTHO05D002467 7.6e-12 74.7 153 32.0
SGA_v2.0_scaffold102G29906 Striga asiatica HOM05D001406 ORTHO05D002467 9.9e-12 74.3 107 36.4
HanXRQChr09g0242301 Helianthus annuus HOM05D001406 ORTHO05D002467 1.7e-11 73.6 147 31.3
PSO455G0120 Papaver somniferum HOM05D001406 ORTHO05D002467 2.9e-11 72.8 113 33.6
Lj1g0002155 Lotus japonicus HOM05D001406 ORTHO05D002467 6.4e-11 71.6 110 32.7
PSO170G1851 Papaver somniferum HOM05D001406 ORTHO05D002467 6.4e-11 71.6 113 32.7
CDE06G0959 Ceratophyllum demersum HOM05D001406 ORTHO05D002467 1.9e-10 70.1 85 38.8
HPP92_019940 Vanilla planifolia HOM05D000315 ORTHO05D001379 9.3e-10 67.8 105 33.3
TPR.G9566 Trifolium pratense HOM05D001406 ORTHO05D002467 1.2e-09 67.4 115 31.3
CBR_g20169 Chara braunii HOM05D001406 ORTHO05D002467 6.7e-08 61.6 103 40.8
SHI35811 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-07 60.5 86 38.4
SHI03492 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-07 60.1 90 36.7
SEGI_07828 Sequoiadendron giganteum HOM05D001406 ORTHO05D002467 4.3e-07 58.9 109 31.2
Aqoxy5G00750 Aquilegia oxysepala HOM05D001406 ORTHO05D002467 5.6e-07 58.5 105 29.5
Nn3g21477 Nelumbo nucifera HOM05D001406 ORTHO05D002467 5.6e-07 58.5 119 32.8
ATR0322G047 Amborella trichopoda HOM05D001406 ORTHO05D002467 9.6e-07 57.8 105 29.5
MD16G1168100 Malus domestica HOM05D001406 ORTHO05D002467 9.6e-07 57.8 111 33.3
Pp3c7_20090 Physcomitrium patens HOM05D001406 ORTHO05D002467 9.6e-07 57.8 111 32.4
Lalb_Chr15g0083481 Lupinus albus HOM05D001406 ORTHO05D002467 1.6e-06 57.0 129 30.2
GSVIVG01035148001 Vitis vinifera HOM05D001406 ORTHO05D002467 1.6e-06 57.0 126 29.4
RcHm_v2.0_Chr4g0422801 Rosa chinensis HOM05D001406 ORTHO05D002467 4.8e-06 55.5 108 30.6
Actinidia01478 Actinidia chinensis HOM05D001406 ORTHO05D002467 8.1e-06 54.7 125 28.8
MSTRG.10101 Avicennia marina HOM05D001406 ORTHO05D002467 8.1e-06 54.7 111 28.8


User provided reference genes

Program Settings