Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.7e-175 618.6 320 100.0
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 5.1e-134 481.5 317 77.9
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.5e-133 479.9 317 79.2
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.5e-133 479.9 317 79.2
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 1.0e-126 457.2 317 74.4
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 3.9e-126 455.3 317 74.4
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 6.6e-126 454.5 301 81.1
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 5.6e-125 451.4 317 73.2
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 2.6e-122 442.6 317 72.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.4e-120 436.8 317 71.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 5.4e-120 434.9 317 70.7
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 6.0e-119 431.4 317 70.0
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.7e-118 427.9 317 68.8
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 6.7e-118 427.9 317 68.8
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.5e-117 426.8 317 68.8
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 3.3e-117 425.6 317 69.7
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.3e-116 423.7 317 68.5
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 4.8e-116 421.8 317 68.8
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.1e-115 420.6 317 70.0
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.4e-115 420.2 317 69.7
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 6.9e-115 417.9 317 68.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 9.0e-115 417.5 314 70.4
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 2.6e-114 416.0 317 67.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 3.4e-114 415.6 317 68.8
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 3.4e-114 415.6 317 67.2
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 5.8e-114 414.8 317 67.2
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.8e-113 412.1 316 68.4
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 4.9e-113 411.8 317 69.1
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.4e-112 410.2 317 67.8
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.9e-112 409.8 317 67.8
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 2.4e-112 409.5 317 67.2
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 3.2e-112 409.1 317 67.5
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 3.2e-112 409.1 317 67.5
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 3.2e-112 409.1 352 62.5
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 4.2e-112 408.7 317 66.2
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 4.2e-112 408.7 317 66.2
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 4.2e-112 408.7 317 67.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 5.5e-112 408.3 317 67.5
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.5e-112 408.3 328 65.5
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 7.1e-112 407.9 317 66.2
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 7.1e-112 407.9 317 67.2
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.2e-111 407.1 317 66.2
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 1.6e-111 406.8 317 65.9
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.1e-111 406.4 317 66.9
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.1e-111 406.4 317 67.8
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 2.7e-111 406.0 329 65.7
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 3.5e-111 405.6 317 66.2
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 4.6e-111 405.2 317 67.2
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 4.6e-111 405.2 317 65.6
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 4.6e-111 405.2 317 67.8
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 6.0e-111 404.8 317 67.8
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.9e-111 404.4 316 68.0
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.0e-110 404.1 317 66.6
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.3e-110 403.7 317 65.6
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.3e-110 403.7 323 65.3
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.3e-110 403.7 317 67.2
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.3e-110 403.7 317 67.2
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.3e-110 402.9 314 66.9
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.3e-110 402.9 317 65.3
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 6.7e-110 401.4 317 66.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.1e-109 400.6 320 66.6
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.9e-109 399.8 317 65.6
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.9e-109 399.8 316 68.0
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.3e-109 399.1 317 66.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 4.3e-109 398.7 317 67.2
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 5.6e-109 398.3 317 65.3
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 5.6e-109 398.3 317 65.6
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 5.6e-109 398.3 320 66.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 1.3e-108 397.1 317 65.9
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.8e-108 396.0 317 65.6
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 8.1e-108 394.4 317 65.9
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 8.1e-108 394.4 317 65.0
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 8.1e-108 394.4 317 65.0
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.8e-107 393.3 317 65.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.8e-107 393.3 317 64.4
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.4e-107 392.9 319 64.6
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 4.0e-107 392.1 319 64.3
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.9e-107 391.3 343 62.4
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 2.6e-106 389.4 312 67.9
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 4.5e-106 388.7 320 63.4
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 1.0e-105 387.5 317 64.7
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.9e-104 383.3 318 63.5
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.2e-103 380.6 317 62.8
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.1e-103 379.8 317 63.7
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 3.5e-103 379.0 317 63.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 7.9e-103 377.9 311 65.3
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.0e-102 377.5 317 62.8
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 6.7e-102 374.8 317 60.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 6.7e-102 374.8 315 62.5
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 3.7e-100 369.0 317 62.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.1e-99 367.5 293 64.5
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.0e-98 363.2 317 59.9
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 2.6e-98 362.8 308 64.3
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.5e-98 362.1 317 61.2
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 1.0e-97 360.9 237 74.3
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.3e-97 360.5 320 61.2
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.3e-97 360.5 317 61.2
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 1.7e-97 360.1 236 74.6
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 2.2e-97 359.8 318 59.7
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 5.0e-97 358.6 317 60.3
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 8.5e-97 357.8 317 58.0
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.1e-96 357.5 317 60.3
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.9e-96 356.7 316 60.4
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 1.2e-95 354.0 317 60.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.1e-95 353.2 317 61.2
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.8e-94 350.1 237 70.9
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 2.3e-94 349.7 321 59.8
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 3.0e-94 349.4 276 66.7
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 1.6e-92 343.6 318 58.2
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 3.7e-92 342.4 314 59.6
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 4.8e-92 342.0 315 59.7
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 9.1e-91 337.8 362 53.6
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.2e-90 337.4 236 71.2
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.7e-90 334.7 318 58.8
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 3.8e-89 332.4 318 58.8
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 7.9e-87 324.7 236 73.3
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 4.8e-84 315.5 318 53.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.7e-81 307.0 194 78.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.1e-80 304.3 317 55.5
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 3.0e-78 296.2 326 51.5
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 3.3e-77 292.7 330 52.7
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.3e-77 292.7 194 72.2
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.8e-76 288.9 316 50.3
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.4e-75 287.3 317 51.4
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.8e-75 287.0 317 52.1
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.0e-73 281.2 280 55.0
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.7e-73 280.4 231 66.7
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.9e-72 276.9 305 55.7
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.5e-72 276.6 317 50.8
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 3.6e-71 272.7 274 52.9
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.4e-70 270.8 300 51.0
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 7.5e-69 265.0 231 60.6
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.7e-68 263.8 311 48.6
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 7.0e-67 258.5 241 54.4
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.0e-65 254.6 231 58.4
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.9e-65 253.1 231 59.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.9e-64 250.4 313 48.6
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.2e-64 249.6 392 41.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.8e-62 243.8 216 57.4
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 5.4e-59 232.3 179 66.5
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 7.0e-59 231.9 352 44.0
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.8e-54 217.2 317 39.1
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.8e-51 207.2 331 39.3
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 3.0e-46 189.9 137 70.8
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 5.4e-43 179.1 250 41.6
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.9e-33 146.4 88 80.7
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 8.9e-30 135.2 108 63.9
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 9.9e-29 131.7 79 74.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.3e-28 131.3 310 32.3
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 3.6e-23 113.2 130 51.5
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-21 108.2 150 46.7
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 4.1e-19 99.8 58 79.3
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.2e-18 98.2 125 49.6
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 4.7e-15 86.3 343 28.3
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 8.1e-15 85.5 107 50.5
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 9.0e-14 82.0 60 73.3
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.8e-13 79.3 140 38.6
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 6.6e-09 65.9 51 60.8
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 6.6e-09 65.9 51 60.8


User provided reference genes

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