Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0179900 Rhododendron simsii HOM05D005898 ORTHO05D007493 6.1e-149 530.8 268 100.0
vmacro20860 Vaccinium macrocarpon HOM05D005898 ORTHO05D007493 1.3e-103 380.2 254 76.8
CSS0002345 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 8.1e-101 370.9 242 74.8
CSS0024013 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 5.2e-100 368.2 242 74.4
Dinv27268 Davidia involucrata HOM05D005898 ORTHO05D007493 1.2e-99 367.1 242 74.4
Actinidia29492 Actinidia chinensis HOM05D005898 ORTHO05D007493 4.9e-98 361.7 242 73.6
Thecc.08G133400 Theobroma cacao HOM05D005898 ORTHO05D007493 2.1e-96 356.3 242 73.1
Duzib041G0058 Durio zibethinus HOM05D005898 ORTHO05D007493 5.1e-95 351.7 242 71.9
Hma1.2p1_1121F.1_g259260 Hydrangea macrophylla HOM05D005898 ORTHO05D007493 5.1e-95 351.7 242 69.8
Haze_17639 Corylus avellana HOM05D005898 ORTHO05D007493 1.9e-94 349.7 242 70.7
CSS0035583 Camellia sinensis var. sinensis HOM05D005898 ORTHO05D007493 3.6e-93 345.5 242 71.9
TWI34G0248 Tripterygium wilfordii HOM05D005898 ORTHO05D007493 8.1e-93 344.4 242 69.8
CiPaw.15G031100 Carya illinoinensis HOM05D005898 ORTHO05D007493 2.4e-92 342.8 241 70.1
Potri.005G182000 Populus trichocarpa HOM05D005898 ORTHO05D007493 4.0e-92 342.0 242 71.5
Sabra05G0138000 Salix brachista HOM05D005898 ORTHO05D007493 5.3e-92 341.7 242 69.0
Cc10_g13730 Coffea canephora HOM05D005898 ORTHO05D007493 1.5e-91 340.1 242 70.2
Peaxi162Scf00066g00224 Petunia axillaris HOM05D005898 ORTHO05D007493 3.4e-91 339.0 266 66.5
Nitab4.5_0003978g0050 Nicotiana tabacum HOM05D005898 ORTHO05D007493 4.4e-91 338.6 267 65.5
Ciclev10002166m.g Citrus clementina HOM05D005898 ORTHO05D007493 7.6e-91 337.8 242 67.8
Manes.02G168700 Manihot esculenta HOM05D005898 ORTHO05D007493 9.9e-91 337.4 266 63.9
QL09p032362 Quercus lobata HOM05D005898 ORTHO05D007493 1.7e-90 336.7 242 68.6
MELO3C010516.2 Cucumis melo HOM05D005898 ORTHO05D007493 4.9e-90 335.1 242 67.8
Nitab4.5_0000317g0210 Nicotiana tabacum HOM05D005898 ORTHO05D007493 4.9e-90 335.1 267 64.8
PGSC0003DMG400025321 Solanum tuberosum HOM05D005898 ORTHO05D007493 6.4e-90 334.7 267 65.2
Eucgr.E01005 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-89 334.0 243 65.4
Sopen04g025740 Solanum pennellii HOM05D005898 ORTHO05D007493 1.9e-89 333.2 267 64.4
CAN.G716.15 Capsicum annuum HOM05D005898 ORTHO05D007493 2.4e-89 332.8 267 64.4
ClCG11G016010 Citrullus lanatus HOM05D005898 ORTHO05D007493 3.2e-89 332.4 242 66.1
Gohir.A02G110700 Gossypium hirsutum HOM05D005898 ORTHO05D007493 3.2e-89 332.4 240 67.1
TAR381G0459 Trochodendron aralioides HOM05D005898 ORTHO05D007493 3.2e-89 332.4 242 66.9
AUR62007708 Chenopodium quinoa HOM05D005898 ORTHO05D007493 4.2e-89 332.0 242 65.3
CsaV3_4G028000 Cucumis sativus L. HOM05D005898 ORTHO05D007493 5.4e-89 331.6 242 66.5
Prupe.1G489200 Prunus persica HOM05D005898 ORTHO05D007493 5.4e-89 331.6 242 65.3
Solyc04g057890.3 Solanum lycopersicum HOM05D005898 ORTHO05D007493 9.3e-89 330.9 267 64.0
Cpa.g.sc26.314 Carica papaya HOM05D005898 ORTHO05D007493 1.2e-88 330.5 242 66.5
CANSAT25G1205 Cannabis sativa HOM05D005898 ORTHO05D007493 1.6e-88 330.1 227 69.6
Gorai.013G108000 Gossypium raimondii HOM05D005898 ORTHO05D007493 1.6e-88 330.1 240 66.7
AUR62013433 Chenopodium quinoa HOM05D005898 ORTHO05D007493 2.1e-88 329.7 241 65.6
Ah.05g169090 Amaranthus hybridus HOM05D005898 ORTHO05D007493 2.7e-88 329.3 242 65.3
Sed0026006 Sechium edule HOM05D005898 ORTHO05D007493 3.5e-88 328.9 242 65.7
EL10Ac1g01360 Beta vulgaris HOM05D005898 ORTHO05D007493 4.6e-88 328.6 242 65.7
Psat5g084560 Pisum sativum HOM05D005898 ORTHO05D007493 4.6e-88 328.6 265 61.5
Gohir.D03G069006 Gossypium hirsutum HOM05D005898 ORTHO05D007493 1.0e-87 327.4 240 66.2
TPR.G21851 Trifolium pratense HOM05D005898 ORTHO05D007493 1.3e-87 327.0 265 61.9
DCAR_014367 Daucus carota HOM05D005898 ORTHO05D007493 1.7e-87 326.6 242 67.4
Atru.chr13.1575 Acer truncatum HOM05D005898 ORTHO05D007493 2.3e-87 326.2 242 66.9
Medtr3g088635 Medicago truncatula HOM05D005898 ORTHO05D007493 3.9e-87 325.5 265 60.0
PSO528G0126 Papaver somniferum HOM05D005898 ORTHO05D007493 3.9e-87 325.5 236 68.6
ECA236G4352 Erigeron canadensis HOM05D005898 ORTHO05D007493 5.1e-87 325.1 242 65.3
HanXRQChr02g0045111 Helianthus annuus HOM05D005898 ORTHO05D007493 8.7e-87 324.3 243 64.2
Ca_16611_v3 Cicer arietinum L. HOM05D005898 ORTHO05D007493 1.1e-86 323.9 242 65.7
MSTRG.1410 Avicennia marina HOM05D005898 ORTHO05D007493 1.5e-86 323.6 266 61.7
PSO170G0207 Papaver somniferum HOM05D005898 ORTHO05D007493 1.5e-86 323.6 236 68.6
arahy.Tifrunner.gnm1.ann1.74JCE2 Arachis hypogaea HOM05D005898 ORTHO05D007493 2.5e-86 322.8 242 64.0
arahy.Tifrunner.gnm1.ann1.XM429X Arachis hypogaea HOM05D005898 ORTHO05D007493 2.5e-86 322.8 242 64.0
Aqoxy6G00307 Aquilegia oxysepala HOM05D005898 ORTHO05D007493 3.3e-86 322.4 242 64.5
Lj1g0001609 Lotus japonicus HOM05D005898 ORTHO05D007493 5.6e-86 321.6 255 63.5
Eucgr.C00041 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.6e-85 320.1 243 63.8
Lsat_1_v5_gn_1_7480 Lactuca sativa HOM05D005898 ORTHO05D007493 1.6e-85 320.1 267 59.2
Glyma.06G117800 Glycine max HOM05D005898 ORTHO05D007493 2.8e-85 319.3 242 63.2
VMungo1309G0075 Vigna mungo HOM05D005898 ORTHO05D007493 4.8e-85 318.5 242 62.4
Eucgr.H02194 Eucalyptus grandis HOM05D005898 ORTHO05D007493 6.2e-85 318.2 260 61.5
Glyma.13G034200 Glycine max HOM05D005898 ORTHO05D007493 8.1e-85 317.8 242 63.6
Oeu026373.1 Olea europaea HOM05D005898 ORTHO05D007493 1.1e-84 317.4 267 59.9
Migut.C01068 Erythranthe guttata HOM05D005898 ORTHO05D007493 2.4e-84 316.2 242 64.5
PGR044G1855 Punica granatum HOM05D005898 ORTHO05D007493 3.1e-84 315.8 243 64.2
Eucgr.H02561 Eucalyptus grandis HOM05D005898 ORTHO05D007493 4.0e-84 315.5 260 61.2
Phvul.009G130200 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 4.0e-84 315.5 242 62.0
Glyma.14G155200 Glycine max HOM05D005898 ORTHO05D007493 5.3e-84 315.1 239 64.4
Sc26g0002800 Simmondsia chinensis HOM05D005898 ORTHO05D007493 9.0e-84 314.3 267 59.9
VMungo0647G2141 Vigna mungo HOM05D005898 ORTHO05D007493 9.0e-84 314.3 242 61.6
GSVIVG01008804001 Vitis vinifera HOM05D005898 ORTHO05D007493 9.0e-84 314.3 242 62.8
THA.LOC104812081 Tarenaya hassleriana HOM05D005898 ORTHO05D007493 2.0e-83 313.2 266 60.2
MBI06_g35214_MAGBIO Magnolia biondii HOM05D005898 ORTHO05D007493 2.6e-83 312.8 251 61.8
Phvul.001G068100 Phaseolus vulgaris HOM05D005898 ORTHO05D007493 3.4e-83 312.4 265 57.7
Thhalv10019613m.g Eutrema salsugineum HOM05D005898 ORTHO05D007493 4.5e-83 312.0 241 63.9
RcHm_v2.0_Chr6g0296751 Rosa chinensis HOM05D005898 ORTHO05D007493 4.5e-83 312.0 242 63.6
BraA07t31804Z Brassica rapa HOM05D005898 ORTHO05D007493 7.6e-83 311.2 241 63.5
A07p42830 Brassica napus HOM05D005898 ORTHO05D007493 9.9e-83 310.8 241 63.5
Lalb_Chr08g0241041 Lupinus albus HOM05D005898 ORTHO05D007493 1.3e-82 310.5 242 63.2
Sp5g32460 Schrenkiella parvula HOM05D005898 ORTHO05D007493 1.3e-82 310.5 241 63.5
BcaC08g47621 Brassica carinata HOM05D005898 ORTHO05D007493 1.7e-82 310.1 258 61.2
CAN.G531.17 Capsicum annuum HOM05D005898 ORTHO05D007493 1.7e-82 310.1 252 62.3
FvH4_2g27900 Fragaria vesca HOM05D005898 ORTHO05D007493 2.2e-82 309.7 242 62.4
FAN24G0310 Fragaria x ananassa HOM05D005898 ORTHO05D007493 2.2e-82 309.7 242 62.4
MD15G1133600 Malus domestica HOM05D005898 ORTHO05D007493 2.2e-82 309.7 265 59.2
C06p51450 Brassica napus HOM05D005898 ORTHO05D007493 2.9e-82 309.3 258 60.9
FAN20G2399 Fragaria x ananassa HOM05D005898 ORTHO05D007493 2.9e-82 309.3 242 62.8
BolC6t40163H Brassica oleracea HOM05D005898 ORTHO05D007493 4.9e-82 308.5 258 60.9
Carub.0002s2417 Capsella rubella HOM05D005898 ORTHO05D007493 1.4e-81 307.0 238 63.4
AT1G77290 Arabidopsis thaliana HOM05D005898 ORTHO05D007493 1.9e-81 306.6 241 63.1
Lalb_Chr11g0066191 Lupinus albus HOM05D005898 ORTHO05D007493 2.4e-81 306.2 242 61.6
AL2G37490 Arabidopsis lyrata HOM05D005898 ORTHO05D007493 3.2e-81 305.8 241 62.2
FAN15G2418 Fragaria x ananassa HOM05D005898 ORTHO05D007493 5.4e-81 305.1 240 61.7
FAN15G2964 Fragaria x ananassa HOM05D005898 ORTHO05D007493 5.4e-81 305.1 240 61.7
Os04g0435500 Oryza sativa ssp. japonica HOM05D005898 ORTHO05D007493 2.5e-78 296.2 264 55.3
SGA_v2.0_scaffold52G18918 Striga asiatica HOM05D005898 ORTHO05D007493 3.7e-77 292.4 266 56.8
Zm00001eb082540 Zea mays HOM05D005898 ORTHO05D007493 3.7e-77 292.4 264 54.9
Aa31LG4G7300 Aethionema arabicum HOM05D005898 ORTHO05D007493 4.5e-75 285.4 235 63.4
ATR0584G218 Amborella trichopoda HOM05D005898 ORTHO05D007493 3.2e-73 279.3 264 55.3
COL.COLO4_35486 Corchorus olitorius HOM05D005898 ORTHO05D007493 1.2e-72 277.3 202 68.8
Eucgr.B02072 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.2e-64 250.8 198 62.1
SEGI_40355 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 8.2e-61 238.0 240 47.9
HPP92_005662 Vanilla planifolia HOM05D005898 ORTHO05D007493 2.0e-59 233.4 230 51.7
Pp3c4_7330 Physcomitrium patens HOM05D005898 ORTHO05D007493 2.2e-53 213.4 224 46.4
Lj4C681T5 Lonicera japonica HOM05D005898 ORTHO05D007493 2.9e-50 203.0 189 54.5
SMO116G0017 Selaginella moellendorffii HOM05D005898 ORTHO05D007493 3.8e-50 202.6 240 40.8
Eucgr.A01942 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-49 201.1 190 55.8
Eucgr.J01273 Eucalyptus grandis HOM05D005898 ORTHO05D007493 1.1e-49 201.1 190 55.8
Mapoly0029s0068 Marchantia polymorpha HOM05D005898 ORTHO05D007493 1.8e-47 193.7 239 41.8
arahy.Tifrunner.gnm1.ann1.E0932D Arachis hypogaea HOM05D005898 ORTHO05D007493 3.7e-45 186.0 121 69.4
CARHR070800 Cardamine hirsuta HOM05D005898 ORTHO05D007493 7.2e-41 171.8 180 51.1
Nn1g08950 Nelumbo nucifera HOM05D005898 ORTHO05D007493 2.1e-40 170.2 147 55.1
SEGI_24309 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 5.2e-39 165.6 248 36.3
MD08G1159700 Malus domestica HOM05D005898 ORTHO05D007493 1.1e-38 164.5 119 63.9
Dinv14694 Davidia involucrata HOM05D005898 ORTHO05D007493 5.0e-34 149.1 117 67.5
Peaxi162Scf00591g00717 Petunia axillaris HOM05D005898 ORTHO05D007493 3.7e-29 132.9 111 57.7
CARHR070790 Cardamine hirsuta HOM05D005898 ORTHO05D007493 5.3e-28 129.0 77 74.0
Nn5g28442 Nelumbo nucifera HOM05D005898 ORTHO05D007493 1.0e-26 124.8 74 75.7
Pp3c7_4180 Physcomitrium patens HOM05D005898 ORTHO05D007493 2.9e-26 123.2 243 28.8
Lj4C682T8 Lonicera japonica HOM05D005898 ORTHO05D007493 1.5e-25 120.9 92 63.0
Pp3c2_9920 Physcomitrium patens HOM05D005898 ORTHO05D007493 1.6e-24 117.5 223 31.8
Pp3c14_19170 Physcomitrium patens HOM05D005898 ORTHO05D048762 4.7e-24 115.9 241 28.6
Pp3c17_19050 Physcomitrium patens HOM05D005898 ORTHO05D007493 6.1e-24 115.5 221 29.9
Pp3c17_19052 Physcomitrium patens HOM05D005898 ORTHO05D007493 6.1e-24 115.5 221 29.9
VMungo0251G2592 Vigna mungo HOM05D005898 ORTHO05D007493 3.0e-23 113.2 118 50.8
unitig_0.g2114 Utricularia gibba HOM05D005898 ORTHO05D007493 5.2e-23 112.5 135 42.2
RcHm_v2.0_Chr7g0218491 Rosa chinensis HOM05D005898 ORTHO05D007493 6.8e-23 112.1 137 43.8
Mapoly0004s0061 Marchantia polymorpha HOM05D005898 ORTHO05D048762 1.3e-21 107.8 243 26.7
SEGI_14681 Sequoiadendron giganteum HOM05D005898 ORTHO05D007493 2.9e-18 96.7 77 55.8
BcaB05g25031 Brassica carinata HOM05D001308 ORTHO05D001170 1.1e-12 78.2 75 52.0
CAN.G749.9 Capsicum annuum HOM05D005898 ORTHO05D008629 1.2e-11 74.7 76 51.3
unitig_22.g5243 Utricularia gibba HOM05D000498 ORTHO05D000354 7.3e-09 65.5 228 26.3
Lj6g0011143 Lotus japonicus HOM05D000498 ORTHO05D000354 1.4e-07 61.2 200 22.0
Peaxi162Scf00190g01526 Petunia axillaris HOM05D005898 ORTHO05D007493 1.4e-07 61.2 76 44.7
THA.LOC104801262 Tarenaya hassleriana HOM05D000498 ORTHO05D000354 1.4e-07 61.2 193 25.4
Sabra01G0161500 Salix brachista HOM05D000498 ORTHO05D000354 1.8e-07 60.8 216 21.8
TPR.G18435 Trifolium pratense HOM05D000498 ORTHO05D000354 4.0e-07 59.7 192 23.4
FvH4_6g38760 Fragaria vesca HOM05D000498 ORTHO05D000354 8.9e-07 58.5 216 20.4
FAN05G1527 Fragaria x ananassa HOM05D000498 ORTHO05D000354 8.9e-07 58.5 216 20.4
FAN09G2564 Fragaria x ananassa HOM05D000498 ORTHO05D000354 8.9e-07 58.5 216 20.4
FAN14G1005 Fragaria x ananassa HOM05D000498 ORTHO05D000354 8.9e-07 58.5 216 20.4
Manes.02G089200 Manihot esculenta HOM05D000498 ORTHO05D000354 1.2e-06 58.2 225 20.9
Psat2g017360 Pisum sativum HOM05D000498 ORTHO05D000354 1.2e-06 58.2 235 24.7
FAN02G3190 Fragaria x ananassa HOM05D000498 ORTHO05D000354 1.5e-06 57.8 216 20.4
CiPaw.08G069800 Carya illinoinensis HOM05D000498 ORTHO05D000354 2.6e-06 57.0 228 22.4
Eucgr.K03456 Eucalyptus grandis HOM05D000498 ORTHO05D000354 2.6e-06 57.0 203 24.6
PSO675G6494 Papaver somniferum HOM05D000498 ORTHO05D000354 2.6e-06 57.0 228 21.9
Hma1.2p1_2322F.1_g319890 Hydrangea macrophylla HOM05D000498 ORTHO05D000354 3.4e-06 56.6 233 21.5
Hma1.2p1_2849F.1_g329375 Hydrangea macrophylla HOM05D000498 ORTHO05D000354 3.4e-06 56.6 233 21.5
CARHR039910 Cardamine hirsuta HOM05D000498 ORTHO05D000354 4.4e-06 56.2 210 26.7
MD08G1006600 Malus domestica HOM05D000498 ORTHO05D000354 4.4e-06 56.2 228 22.4
PSO541G4986 Papaver somniferum HOM05D000498 ORTHO05D000354 4.4e-06 56.2 228 21.9
Prupe.3G178100 Prunus persica HOM05D000498 ORTHO05D000354 4.4e-06 56.2 210 21.0
TPR.G18432 Trifolium pratense HOM05D000498 ORTHO05D000354 4.4e-06 56.2 197 21.8
Prupe.1G358500 Prunus persica HOM05D000498 ORTHO05D000354 5.8e-06 55.8 234 23.1
BcaC07g42296 Brassica carinata HOM05D000498 ORTHO05D000354 7.5e-06 55.5 247 23.9
Lsat_1_v5_gn_7_30140 Lactuca sativa HOM05D000498 ORTHO05D000354 7.5e-06 55.5 192 22.9
Prupe.3G178300 Prunus persica HOM05D000498 ORTHO05D000354 7.5e-06 55.5 192 20.8
SGA_v2.0_scaffold2G01408 Striga asiatica HOM05D000498 ORTHO05D000354 7.5e-06 55.5 199 24.6
TPR.G25279 Trifolium pratense HOM05D000498 ORTHO05D000354 7.5e-06 55.5 228 21.5
HanXRQChr15g0480091 Helianthus annuus HOM05D000498 ORTHO05D000354 9.8e-06 55.1 197 23.9
MD17G1133600 Malus domestica HOM05D000498 ORTHO05D000354 9.8e-06 55.1 192 20.3


User provided reference genes

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