Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 3.9e-216 754.6 405 100.0
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 2.0e-180 636.0 452 78.8
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.5e-172 608.6 402 77.1
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 5.0e-171 604.7 429 72.7
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 6.8e-168 594.3 405 74.1
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.7e-166 588.6 405 76.5
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 5.4e-165 584.7 406 72.2
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 3.9e-163 578.6 405 70.9
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 6.6e-163 577.8 405 70.6
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 6.6e-163 577.8 405 73.3
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 4.3e-162 575.1 404 71.0
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 2.8e-161 572.4 405 71.4
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 5.8e-159 564.7 403 74.4
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 5.4e-157 558.1 393 71.8
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 7.8e-156 554.3 469 61.4
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 1.0e-155 553.9 404 75.0
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 3.9e-155 552.0 402 68.9
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 1.1e-154 550.4 402 68.7
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 7.3e-154 547.7 406 67.5
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 9.5e-154 547.4 406 67.7
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.2e-153 547.0 406 69.2
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 2.8e-153 545.8 403 72.5
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.1e-152 543.9 406 66.7
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.4e-152 543.5 403 68.0
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 4.4e-151 538.5 405 71.9
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 7.5e-151 537.7 409 66.7
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 3.7e-150 535.4 404 66.6
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.1e-149 533.9 405 66.2
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 1.1e-149 533.9 402 71.4
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 1.4e-149 533.5 406 64.8
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 4.1e-149 531.9 405 65.2
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 5.4e-149 531.6 405 64.9
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 7.1e-149 531.2 402 65.4
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 2.1e-148 529.6 402 66.4
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 4.6e-148 528.5 406 66.3
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 6.0e-148 528.1 397 67.0
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 3.9e-147 525.4 402 64.9
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 3.9e-147 525.4 406 66.0
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 6.6e-147 524.6 402 64.4
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 8.6e-147 524.2 406 63.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 8.6e-147 524.2 406 63.3
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 1.1e-146 523.9 403 70.0
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 2.5e-146 522.7 391 65.5
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 3.3e-146 522.3 404 64.9
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 3.3e-146 522.3 406 63.1
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 4.3e-146 521.9 405 65.4
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 7.3e-146 521.2 405 65.7
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 9.5e-146 520.8 373 68.4
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.2e-145 520.4 406 63.5
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 1.2e-145 520.4 405 65.2
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 3.6e-145 518.8 403 66.0
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 1.8e-144 516.5 407 69.3
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 6.8e-144 514.6 404 63.1
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 8.9e-144 514.2 404 65.1
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 6.4e-142 508.1 403 62.5
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 1.7e-139 500.0 373 73.5
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.7e-139 500.0 406 61.3
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 1.2e-137 493.8 406 63.1
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 2.8e-137 492.7 411 66.9
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 6.2e-137 491.5 402 67.2
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.4e-136 489.6 399 65.7
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 1.5e-135 486.9 363 66.7
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 2.0e-135 486.5 407 68.1
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 9.9e-135 484.2 402 67.2
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.9e-134 482.6 407 61.2
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 2.9e-134 482.6 399 61.2
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 3.8e-134 482.3 399 61.2
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 1.1e-133 480.7 403 65.3
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 1.4e-133 480.3 399 60.9
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 1.4e-133 480.3 399 60.9
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 7.1e-133 478.0 385 62.9
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 9.3e-133 477.6 399 60.4
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.6e-132 475.3 402 60.7
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 4.3e-130 468.8 401 58.4
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 5.6e-130 468.4 354 72.0
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 5.6e-130 468.4 400 58.0
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.3e-129 467.2 313 76.0
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 1.3e-129 467.2 401 59.4
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.6e-129 466.8 394 65.7
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 3.6e-129 465.7 399 60.2
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 1.8e-128 463.4 394 66.0
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 5.3e-128 461.8 394 65.7
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 5.8e-127 458.4 392 63.3
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 1.7e-126 456.8 401 64.6
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 3.8e-126 455.7 401 64.3
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 1.9e-125 453.4 338 67.2
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 2.8e-121 439.5 403 60.5
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 6.2e-121 438.3 403 57.1
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 3.4e-119 432.6 406 57.6
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 3.8e-118 429.1 403 57.1
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 6.4e-118 428.3 386 56.5
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 5.5e-117 425.2 406 56.2
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 1.2e-116 424.1 332 66.0
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 2.3e-115 419.9 405 56.8
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 2.3e-115 419.9 402 54.5
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 1.5e-114 417.2 302 76.8
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 7.4e-114 414.8 380 58.9
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 3.1e-112 409.5 358 67.6
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 1.0e-110 404.4 482 49.6
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 7.9e-108 394.8 284 69.0
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.8e-104 383.6 348 59.8
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 8.5e-102 374.8 273 76.2
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 2.5e-101 373.2 312 68.6
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 1.2e-100 370.9 271 67.9
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 6.1e-100 368.6 305 69.2
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 3.0e-99 366.3 313 60.4
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 5.1e-99 365.5 306 68.3
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 1.8e-96 357.1 271 73.1
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 4.7e-84 315.8 331 49.8
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 1.0e-83 314.7 311 54.0
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 2.9e-78 296.6 404 44.1
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 8.0e-76 288.5 252 68.3
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 1.5e-69 267.7 223 65.5
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 9.5e-61 238.4 190 62.6
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 1.6e-60 237.7 257 54.5
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 3.6e-60 236.5 310 44.8
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 9.2e-56 221.9 299 48.2
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 1.3e-54 218.0 321 45.5
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 1.0e-51 208.4 160 64.4
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 2.9e-49 200.3 143 69.2
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 8.6e-46 188.7 219 42.5
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 2.1e-44 184.1 158 60.1
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 4.7e-44 183.0 154 61.0
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 6.2e-44 182.6 152 62.5
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.6e-42 177.2 123 68.3
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.0e-30 138.7 402 30.1
Nitab4.5_0000176g0130 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.2e-28 129.4 81 69.1
Nitab4.5_0005924g0010 Nicotiana tabacum HOM05D005874 ORTHO05D007206 1.1e-27 128.6 81 69.1
MCO05G448 Micromonas commoda HOM05D005874 ORTHO05D007206 1.9e-24 117.9 300 29.3
Duzib192G0979 Durio zibethinus HOM05D005874 ORTHO05D007206 3.2e-24 117.1 88 73.9
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 5.1e-22 109.8 159 44.0
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 9.0e-19 99.0 58 84.5
BolC4t23058H Brassica oleracea HOM05D008292 ORTHO05D003352 2.2e-17 94.4 90 52.2
C04p14840 Brassica napus HOM05D005874 ORTHO05D007206 2.9e-17 94.0 90 51.1
BcaC02g11489 Brassica carinata HOM05D005874 ORTHO05D007206 3.8e-17 93.6 90 51.1
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 6.4e-17 92.8 229 31.0
C02p36570 Brassica napus HOM05D005874 ORTHO05D007206 1.6e-12 78.2 67 52.2
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 1.3e-09 68.6 130 32.3
arahy.Tifrunner.gnm1.ann1.IHLS5N Arachis hypogaea HOM05D010413 ORTHO05D014444 5.1e-06 56.6 47 46.8


User provided reference genes

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