Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 0.0e+00 1209.9 599 100.0
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 8.1e-218 760.8 453 83.9
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 1.8e-188 663.3 447 72.9
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 8.5e-183 644.4 442 73.1
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 1.1e-179 634.0 447 69.1
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 2.6e-176 622.9 454 67.0
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 3.2e-174 615.9 443 67.7
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 6.1e-173 611.7 447 65.5
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.0e-171 606.7 441 66.7
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 2.8e-170 602.8 451 65.0
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 1.4e-169 600.5 451 65.9
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 7.0e-169 598.2 436 66.1
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 1.2e-168 597.4 438 66.4
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 1.2e-168 597.4 443 65.7
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.0e-168 596.7 438 63.5
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 2.6e-168 596.3 451 65.2
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 5.9e-168 595.1 444 64.6
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 7.7e-168 594.7 438 63.2
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.3e-167 594.0 438 63.5
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 1.3e-167 594.0 438 63.7
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 1.5e-166 590.5 442 64.5
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 4.7e-165 585.5 445 62.9
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 4.7e-165 585.5 448 61.8
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 8.0e-165 584.7 438 63.5
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 8.0e-165 584.7 430 64.2
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 1.0e-164 584.3 453 61.1
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 3.9e-164 582.4 438 62.8
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 3.3e-163 579.3 445 61.8
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 7.4e-163 578.2 443 63.4
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.3e-162 577.4 437 63.2
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 2.4e-161 573.2 435 62.8
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 1.2e-160 570.9 441 62.1
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 2.6e-160 569.7 436 64.2
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 2.2e-159 566.6 438 61.4
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 1.9e-158 563.5 438 61.6
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.4e-155 552.7 448 60.7
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 4.4e-155 552.4 452 58.6
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 9.8e-155 551.2 452 58.2
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 2.2e-154 550.1 452 58.2
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 2.2e-154 550.1 434 60.6
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 2.2e-154 550.1 426 62.0
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 3.7e-154 549.3 440 60.9
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 4.8e-154 548.9 454 59.7
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 4.8e-154 548.9 448 59.6
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 1.1e-153 547.7 444 59.9
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.8e-153 547.0 422 63.5
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 3.1e-153 546.2 451 58.5
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 4.1e-153 545.8 446 57.6
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 7.0e-153 545.0 448 57.4
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 1.3e-151 540.8 440 59.3
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 1.3e-151 540.8 455 58.7
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 1.7e-151 540.4 418 61.7
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 1.7e-151 540.4 452 58.2
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 2.9e-151 539.7 424 59.2
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 3.8e-151 539.3 439 59.7
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.1e-150 537.7 439 59.5
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 1.6e-149 533.9 445 59.3
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 3.6e-149 532.7 453 57.8
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 1.0e-148 531.2 431 59.2
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.8e-148 530.4 459 57.1
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.8e-148 530.4 449 59.2
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.2e-147 527.7 431 57.5
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 3.4e-147 526.2 427 58.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.7e-146 523.9 431 58.2
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 2.2e-146 523.5 398 62.1
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 6.3e-146 521.9 464 55.2
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 8.3e-146 521.5 451 57.2
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 1.6e-144 517.3 435 56.3
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 5.9e-144 515.4 442 57.7
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 5.0e-143 512.3 439 56.7
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 1.5e-142 510.8 423 57.7
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 3.3e-142 509.6 445 56.4
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 4.2e-142 509.2 413 60.3
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 5.6e-142 508.8 423 57.4
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 1.2e-141 507.7 437 56.8
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 5.2e-140 502.3 433 57.3
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 2.0e-139 500.4 431 56.6
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 2.0e-139 500.4 431 57.5
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 4.4e-139 499.2 445 55.7
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.6e-133 480.7 386 57.5
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 3.6e-133 479.6 396 59.1
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 2.9e-130 469.9 293 75.1
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 1.2e-128 464.5 430 53.5
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 8.9e-124 448.4 297 69.4
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 3.9e-119 433.0 289 69.6
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 2.2e-114 417.2 458 44.5
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 8.4e-114 415.2 410 49.0
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 4.1e-113 412.9 482 44.0
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 3.0e-111 406.8 411 47.0
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.6e-104 384.4 248 73.8
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 2.1e-104 384.0 263 73.4
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 3.5e-104 383.3 282 63.1
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 3.0e-103 380.2 273 66.3
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 4.8e-101 372.9 322 57.1
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 2.7e-96 357.1 440 45.2
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 1.1e-94 351.7 248 72.2
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 9.9e-91 338.6 229 67.7
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 3.8e-90 336.7 229 69.0
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 1.4e-89 334.7 239 66.1
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 5.5e-89 332.8 431 40.8
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.1e-84 318.5 377 43.5
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 9.0e-84 315.5 377 43.0
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.6e-64 250.4 195 65.1
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 8.5e-58 229.2 445 31.7
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 1.0e-55 222.2 195 54.4
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 1.3e-53 215.3 347 35.7
MCO09G637 Micromonas commoda HOM05D006592 ORTHO05D008122 1.7e-42 178.3 484 28.3
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 8.0e-40 169.5 307 31.6
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 2.6e-38 164.5 144 56.2
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 3.7e-37 160.6 124 59.7
Cpa.g.sc137.29 Carica papaya HOM05D006592 ORTHO05D008122 4.8e-37 160.2 110 71.8
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 2.0e-35 154.8 131 54.2
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 2.2e-34 151.4 137 53.3
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 5.0e-34 150.2 125 56.0
PRCOL_00001501 Prasinoderma coloniale HOM05D006592 ORTHO05D008122 8.5e-34 149.4 424 28.8
MBI14_g31659_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.6e-32 144.1 96 75.0
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 1.2e-27 129.0 123 50.4
MBI02_g32478_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 3.8e-26 124.0 91 70.3
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 8.0e-24 116.3 202 38.1
Dinv37458 Davidia involucrata HOM05D000040 ORTHO05D000267 8.0e-16 89.7 66 71.2
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.3e-13 82.4 81 49.4
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 3.7e-13 80.9 85 47.1
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 7.3e-09 66.6 45 64.4
C08p16710 Brassica napus HOM05D006592 ORTHO05D008122 2.1e-08 65.1 35 62.9


User provided reference genes

Program Settings