Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 8.2e-171 603.6 297 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.3e-112 409.5 298 72.1
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.9e-107 392.5 293 69.6
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 1.8e-101 373.2 279 67.4
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 6.4e-99 364.8 292 65.1
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.1e-97 359.8 297 62.3
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 5.6e-95 351.7 292 60.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.8e-94 349.4 275 63.6
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.1e-93 347.4 293 61.8
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 4.0e-93 345.5 295 61.7
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.4e-92 342.4 285 62.5
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 5.8e-92 341.7 295 59.7
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 1.7e-91 340.1 295 59.7
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.9e-90 336.7 272 61.8
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.5e-89 332.4 261 63.2
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 6.0e-89 331.6 291 59.8
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 1.3e-88 330.5 279 61.6
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-88 330.5 282 60.6
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.3e-88 329.7 289 58.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.9e-88 328.9 282 61.7
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-87 327.4 286 58.4
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.1e-87 327.4 284 58.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 1.5e-87 327.0 285 59.3
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 1.5e-87 327.0 288 57.3
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 3.3e-87 325.9 296 58.4
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 4.3e-87 325.5 265 63.8
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 9.6e-87 324.3 289 57.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 1.6e-86 323.6 273 59.3
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.7e-86 322.4 257 65.8
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.4e-85 320.5 281 58.7
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.8e-85 320.1 293 56.7
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.1e-85 319.3 271 59.8
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 6.9e-85 318.2 286 57.7
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.2e-84 317.4 280 58.6
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.2e-84 317.4 274 59.1
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.5e-84 317.0 274 59.5
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 4.5e-84 315.5 287 56.4
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 6.4e-83 311.6 270 59.6
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 6.4e-83 311.6 285 57.2
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 8.4e-83 311.2 295 57.3
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 8.4e-83 311.2 269 59.9
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.1e-82 310.8 283 55.8
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.4e-82 310.5 242 68.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 1.4e-82 310.5 277 58.8
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.9e-82 310.1 282 56.0
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.9e-82 310.1 286 57.0
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 3.2e-82 309.3 286 54.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 4.2e-82 308.9 289 55.7
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 3.5e-81 305.8 286 55.9
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 6.0e-81 305.1 284 56.3
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 6.0e-81 305.1 284 56.3
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 7.9e-81 304.7 304 56.2
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.9e-81 304.7 283 56.5
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.9e-81 304.7 300 54.0
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.3e-80 303.9 283 56.2
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.8e-80 303.5 270 55.6
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 3.0e-80 302.8 271 57.2
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 3.0e-80 302.8 265 58.1
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 3.9e-80 302.4 283 56.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 3.3e-79 299.3 286 55.9
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 3.3e-79 299.3 304 52.6
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 5.6e-79 298.5 279 55.9
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.6e-78 297.0 288 55.9
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.2e-76 290.8 247 60.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.7e-75 287.0 276 55.1
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.7e-75 287.0 289 55.0
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 4.9e-75 285.4 271 55.7
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 4.9e-75 285.4 313 52.1
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 6.5e-75 285.0 279 55.6
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.9e-74 283.5 271 56.5
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.9e-74 283.5 271 53.1
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 5.5e-74 282.0 284 53.9
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.7e-72 275.0 388 41.5
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 8.7e-72 274.6 278 51.1
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-71 274.2 268 53.0
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 5.7e-71 271.9 284 50.4
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 3.7e-70 269.2 294 51.7
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.1e-69 267.7 158 85.4
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 5.9e-68 261.9 280 52.1
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 8.5e-67 258.1 275 52.0
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-66 257.7 207 65.7
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 4.2e-66 255.8 269 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.5e-66 255.4 284 48.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.7e-65 253.1 273 52.4
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 6.7e-64 248.4 240 56.2
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 3.3e-63 246.1 216 57.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 5.3e-61 238.8 271 45.4
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.9e-59 233.0 217 54.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.4e-58 230.7 245 51.0
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.4e-58 228.0 305 46.2
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 9.4e-58 228.0 305 46.2
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.3e-56 223.4 258 48.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.7e-54 217.2 273 46.2
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.8e-54 216.5 292 44.5
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 3.7e-54 216.1 233 49.4
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.5e-52 210.7 174 60.9
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.3e-48 196.8 283 43.1
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.3e-47 193.0 200 51.5
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.8e-45 187.2 146 62.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 7.0e-45 185.3 214 50.0
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 4.5e-44 182.6 179 52.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 5.9e-44 182.2 185 49.7
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 7.2e-42 175.3 146 58.9
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 9.4e-42 174.9 147 58.5
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 6.1e-41 172.2 178 50.0
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 8.0e-41 171.8 147 57.8
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 8.0e-41 171.8 147 57.8
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.4e-39 166.4 122 65.6
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 2.8e-38 163.3 143 57.3
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 8.3e-38 161.8 128 60.2
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.8e-37 160.6 229 41.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.0e-36 157.1 145 53.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.0e-35 154.8 149 55.0
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.5e-31 141.0 107 63.6
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.6e-31 140.2 313 33.5
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 7.7e-28 128.6 116 56.9
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-26 124.8 95 65.3
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.2e-25 121.3 98 60.2
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.7e-25 119.4 154 44.8
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.8e-24 117.5 110 56.4
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.8e-24 117.5 99 59.6
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 7.5e-23 112.1 107 52.3
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.3e-22 111.3 324 28.7
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-22 111.3 168 41.7
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 5.4e-21 105.9 97 50.5
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 4.5e-20 102.8 93 58.1
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.9e-19 100.1 95 54.7
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.3e-18 95.5 79 50.6
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 3.1e-16 90.1 80 55.0
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.0e-15 87.4 60 71.7
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 4.3e-10 69.7 64 51.6
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 1.3e-06 58.2 34 70.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.3e-06 58.2 50 56.0


User provided reference genes

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