Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 6.2e-155 550.8 290 100.0
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.7e-136 489.6 265 90.2
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 2.2e-136 489.2 290 88.6
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 4.9e-136 488.0 265 89.8
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 8.4e-136 487.3 261 90.8
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.4e-135 486.5 263 90.1
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.4e-135 486.5 261 91.2
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.4e-135 486.5 290 86.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.9e-135 486.1 263 90.1
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 7.1e-135 484.2 261 90.4
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 9.3e-135 483.8 261 90.8
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.7e-134 482.3 261 90.4
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.7e-134 482.3 263 89.7
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.5e-134 481.9 263 89.0
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.5e-134 481.9 261 90.4
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 4.6e-134 481.5 266 89.5
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 6.0e-134 481.1 261 89.3
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 6.0e-134 481.1 263 89.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 6.0e-134 481.1 290 85.9
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.0e-134 481.1 292 87.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 6.0e-134 481.1 292 87.0
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 7.8e-134 480.7 267 88.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.0e-133 480.3 261 88.5
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.3e-133 479.9 261 88.9
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 1.7e-133 479.6 267 89.1
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-133 479.6 267 89.1
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 1.7e-133 479.6 259 89.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 5.1e-133 478.0 259 89.2
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.6e-133 477.6 286 88.5
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 8.7e-133 477.2 260 89.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 1.1e-132 476.9 259 90.0
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 263 89.4
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.1e-132 476.9 290 86.9
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 1.9e-132 476.1 290 87.6
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.9e-132 476.1 263 87.8
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.9e-132 476.1 290 86.2
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.5e-132 475.7 263 89.0
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.3e-132 475.3 297 88.6
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.3e-132 475.3 286 88.1
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 7.3e-132 474.2 295 85.1
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 7.3e-132 474.2 259 89.2
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 7.3e-132 474.2 261 88.9
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 7.3e-132 474.2 263 87.1
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 7.3e-132 474.2 260 86.9
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 9.6e-132 473.8 261 88.9
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.6e-131 473.0 255 91.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 1.6e-131 473.0 290 85.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 2.1e-131 472.6 261 88.9
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 2.8e-131 472.2 261 88.5
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 3.6e-131 471.9 253 91.7
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.8e-131 471.5 263 87.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.8e-131 471.5 263 87.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 4.8e-131 471.5 263 86.3
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 4.8e-131 471.5 263 86.3
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 4.8e-131 471.5 263 86.7
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 4.8e-131 471.5 261 89.3
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 6.2e-131 471.1 259 88.0
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 6.2e-131 471.1 263 88.6
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 6.2e-131 471.1 290 82.4
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.8e-130 469.5 262 87.0
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-130 469.5 284 86.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 2.4e-130 469.2 262 85.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 2.4e-130 469.2 262 87.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 4.0e-130 468.4 262 86.3
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 5.3e-130 468.0 261 87.4
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 5.3e-130 468.0 263 86.7
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 5.3e-130 468.0 263 85.9
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 6.9e-130 467.6 263 85.9
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 6.9e-130 467.6 263 85.9
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 6.9e-130 467.6 260 87.7
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 1.2e-129 466.8 262 86.3
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.5e-129 466.5 263 85.9
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 1.5e-129 466.5 260 87.3
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 2.0e-129 466.1 261 87.0
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.4e-129 465.3 292 81.2
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.4e-129 465.3 257 88.7
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 4.4e-129 464.9 310 82.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.4e-129 464.9 258 88.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 4.4e-129 464.9 260 86.9
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 5.8e-129 464.5 260 87.3
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 5.8e-129 464.5 262 85.9
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 7.6e-129 464.2 292 83.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 7.6e-129 464.2 257 86.8
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 2.9e-128 462.2 260 86.2
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 4.9e-128 461.5 261 85.8
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 6.4e-128 461.1 259 87.3
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 8.4e-128 460.7 260 86.2
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 3.5e-126 455.3 262 85.5
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.6e-123 445.3 358 67.3
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.0e-122 441.8 258 84.9
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 1.1e-119 433.7 236 90.3
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.2e-119 432.2 259 82.2
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 4.2e-119 431.8 263 81.4
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 9.3e-119 430.6 273 79.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 4.6e-118 428.3 262 81.7
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 1.3e-117 426.8 239 87.4
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 5.6e-116 421.4 258 79.5
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 1.6e-115 419.9 261 78.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.2e-112 409.5 253 79.1
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 2.1e-107 392.9 228 85.5
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 1.1e-106 390.6 259 73.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 2.0e-97 359.8 202 89.6
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 1.2e-94 350.5 201 87.6
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 4.4e-92 342.0 256 66.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 7.7e-89 331.3 182 90.7
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.0e-88 330.9 185 89.7
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-88 330.5 182 90.1
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 8.8e-85 317.8 179 89.4
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.6e-84 316.2 162 92.6
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 4.2e-79 298.9 194 78.9
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 9.7e-76 287.7 196 73.0
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-73 280.4 175 82.3
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-72 276.9 175 80.0
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.0e-72 275.4 175 81.1
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.2e-71 272.7 213 70.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 4.7e-70 268.9 156 87.2
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.0e-70 268.1 178 77.0
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.0e-68 263.5 142 88.0
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 9.8e-68 261.2 158 82.9
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-66 257.3 167 77.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 5.4e-66 255.4 166 79.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 4.5e-65 252.3 166 78.9
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.0e-61 241.1 159 76.7
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 4.0e-53 212.6 152 73.0
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 4.4e-52 209.1 201 53.7
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 9.8e-52 208.0 162 68.5
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.0e-41 173.7 93 88.2
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 3.9e-40 169.5 178 56.7
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 8.1e-30 135.2 87 81.6
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.1e-29 134.8 131 57.3
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 4.4e-28 129.4 91 79.1
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 1.7e-27 127.5 71 85.9
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 4.6e-25 119.4 93 64.5
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 5.4e-18 95.9 55 76.4
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 1.6e-17 94.4 55 74.5
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 3.3e-15 86.7 46 82.6
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 7.3e-15 85.5 50 74.0
C09p15390 Brassica napus HOM05D013073 ORTHO05D014961 6.2e-06 55.8 84 40.5


User provided reference genes

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