Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 0.0e+00 1435.6 761 100.0
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 9.7e-293 1010.0 782 72.5
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 4.4e-160 569.3 1075 39.8
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.0e-157 560.5 1103 39.2
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 2.9e-156 556.6 1103 39.1
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 4.7e-154 549.3 1061 39.7
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 2.1e-146 523.9 1073 38.8
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 4.9e-135 486.1 1080 36.2
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 4.0e-129 466.5 980 38.5
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 1.7e-116 424.5 1125 32.7
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 1.8e-113 414.5 1143 31.1
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 3.1e-113 413.7 1037 33.6
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 5.8e-112 409.5 1131 32.0
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 2.9e-111 407.1 1087 32.8
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.9e-107 394.4 1084 32.4
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 4.3e-107 393.3 1075 32.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 2.8e-106 390.6 1099 31.4
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 7.6e-104 382.5 1164 30.2
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 2.7e-101 374.0 1087 32.7
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 6.0e-101 372.9 1075 31.1
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 3.9e-100 370.2 1057 31.2
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 5.1e-100 369.8 1048 31.6
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 1.9e-99 367.9 1048 32.4
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 3.7e-98 363.6 1069 31.3
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 4.8e-98 363.2 1102 30.1
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 2.4e-97 360.9 1104 30.3
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 1.2e-96 358.6 1086 30.5
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 1.5e-96 358.2 1067 31.4
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.0e-96 357.8 983 32.2
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 3.4e-96 357.1 1067 31.4
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 1.3e-95 355.1 1134 30.2
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 5.0e-95 353.2 1104 30.0
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 3.2e-94 350.5 1048 30.5
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 7.1e-94 349.4 1106 29.6
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 9.3e-94 349.0 1101 30.2
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 1.0e-92 345.5 1086 30.2
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 2.8e-90 337.4 1060 31.5
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 2.8e-90 337.4 1024 29.8
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.7e-90 337.0 1141 28.7
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 6.3e-90 336.3 1097 29.9
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 8.2e-90 335.9 1023 30.5
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.1e-89 335.5 1111 29.0
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 1.1e-89 335.5 1065 29.1
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 1.1e-89 335.5 1059 30.0
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 2.4e-89 334.3 1066 30.4
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 3.1e-89 334.0 1176 28.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.5e-88 331.6 1056 29.5
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.0e-87 328.9 1057 29.3
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 1.1e-86 325.5 1137 28.1
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 3.2e-86 323.9 1064 29.2
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 4.2e-86 323.6 1128 28.4
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 2.7e-85 320.9 1064 29.3
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 1.0e-84 318.9 1116 28.8
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 6.7e-84 316.2 1116 28.5
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.1e-83 315.5 1136 27.5
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 1.5e-83 315.1 1068 29.0
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 3.3e-83 313.9 1073 28.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 5.7e-83 313.2 1085 27.6
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 1.4e-81 308.5 967 28.9
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 5.3e-81 306.6 1166 26.1
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 5.3e-81 306.6 1080 27.5
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 6.9e-81 306.2 1165 27.1
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 1.5e-80 305.1 1149 28.6
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 1.9e-78 298.1 1083 29.5
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 3.2e-78 297.4 1083 28.4
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.6e-77 295.0 477 40.5
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 5.1e-76 290.0 939 29.3
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 9.1e-73 279.3 1124 26.9
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.5e-72 278.5 916 30.5
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 2.6e-72 277.7 1056 27.2
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.3e-71 275.4 1225 24.7
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 1.3e-71 275.4 1270 26.2
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 2.2e-71 274.6 1055 26.9
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 2.9e-71 274.2 1127 27.7
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 2.9e-71 274.2 1283 26.4
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 3.6e-69 267.3 1116 25.5
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 3.6e-69 267.3 1079 26.8
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 1.0e-68 265.8 1077 26.6
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.4e-67 260.4 1117 25.8
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 2.6e-64 251.1 1087 25.3
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 3.5e-64 250.8 970 27.5
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 1.3e-63 248.8 1064 25.8
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 2.2e-63 248.1 1138 26.4
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.8e-63 247.3 610 32.1
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.8e-63 247.3 610 32.1
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 5.0e-63 246.9 1112 24.8
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 5.0e-63 246.9 1010 26.8
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 1.0e-60 239.2 1066 25.0
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 5.2e-60 236.9 1066 25.4
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 9.1e-57 226.1 1063 24.4
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 2.5e-54 218.0 1090 24.4
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 9.4e-54 216.1 1091 25.3
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 2.8e-50 204.5 330 40.3
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 3.7e-50 204.1 1057 25.2
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 1.2e-48 199.1 830 26.6
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 1.6e-48 198.7 851 26.8
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 4.5e-48 197.2 794 25.4
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.0e-47 196.1 1108 24.3
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 1.5e-46 192.2 912 24.2
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 2.5e-46 191.4 665 27.1
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 4.0e-44 184.1 1104 23.8
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.5e-43 182.2 1049 24.5
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 1.3e-42 179.1 782 24.8
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 1.1e-41 176.0 648 25.8
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.0e-40 171.8 343 35.3
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 3.5e-40 171.0 647 25.3
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 3.5e-40 171.0 499 32.7
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 4.6e-40 170.6 587 28.8
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 8.6e-39 166.4 1073 23.6
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 1.9e-38 165.2 1068 23.3
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 9.5e-38 162.9 671 24.7
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 8.9e-36 156.4 633 27.5
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 2.2e-34 151.8 639 27.5
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 2.9e-34 151.4 1079 22.2
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.0e-32 145.2 198 49.5
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 3.0e-31 141.4 724 24.2
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 5.0e-31 140.6 765 25.0
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 1.5e-27 129.0 546 26.0
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 2.7e-24 118.2 474 25.5
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.5e-24 117.9 607 21.7
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 1.1e-22 112.8 452 24.1
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 9.5e-22 109.8 166 38.6
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.4e-20 105.9 499 23.2
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 6.0e-16 90.5 424 22.2
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 5.1e-15 87.4 128 41.4
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 1.6e-13 82.4 127 40.2
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 1.6e-13 82.4 86 48.8
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 1.6e-13 82.4 119 52.9
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.7e-13 80.9 94 47.9
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 4.7e-13 80.9 94 47.9
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.4e-12 79.3 110 43.6
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 1.8e-12 79.0 83 49.4
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 1.4e-09 69.3 105 39.0
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 1.4e-09 69.3 190 29.5
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 3.2e-09 68.2 64 48.4
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.7e-08 65.1 91 42.9
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 3.9e-07 61.2 270 26.3
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 4.3e-06 57.8 77 44.2


User provided reference genes

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