Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 2.3e-222 775.4 424 100.0
Actinidia03576 Actinidia chinensis HOM05D033576 ORTHO05D009846 4.3e-32 143.3 456 37.7
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 1.6e-31 141.4 433 37.9
Actinidia14147 Actinidia chinensis HOM05D033576 ORTHO05D009846 2.3e-25 120.9 455 35.4
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 3.7e-23 113.6 476 33.6
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.4e-22 110.9 461 33.0
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 9.1e-22 109.0 466 32.2
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 1.2e-21 108.6 442 33.0
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.2e-21 108.6 471 33.3
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 5.9e-21 106.3 396 35.4
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 5.9e-21 106.3 448 31.9
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.8e-20 103.6 466 32.0
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 1.6e-18 98.2 451 32.4
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 4.7e-18 96.7 508 30.1
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 7.9e-18 95.9 430 32.8
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 1.4e-17 95.1 436 33.7
QL12p025151 Quercus lobata HOM05D013263 ORTHO05D009846 5.1e-17 93.2 448 31.9
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 6.7e-17 92.8 441 32.0
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 1.1e-16 92.0 441 32.0
Aqoxy7G02994 Aquilegia oxysepala HOM05D021794 ORTHO05D009846 1.3e-15 88.6 442 30.3
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 3.7e-15 87.0 464 32.1
Cfa013269 Carpinus fangiana HOM05D014278 ORTHO05D009846 4.8e-15 86.7 452 30.1
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 4.8e-15 86.7 453 30.9
Oeu040384.1 Olea europaea HOM05D009522 ORTHO05D009846 8.2e-15 85.9 296 36.5
MSTRG.25778 Avicennia marina HOM05D009522 ORTHO05D009846 1.1e-14 85.5 503 31.4
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 1.4e-14 85.1 483 29.8
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 1.4e-14 85.1 448 31.9
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 1.8e-14 84.7 441 32.9
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.4e-14 84.3 439 30.1
Duzib168G1354 Durio zibethinus HOM05D019025 ORTHO05D009846 3.1e-14 84.0 443 31.2
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 3.1e-14 84.0 427 29.7
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 7.0e-14 82.8 449 33.0
Prupe.1G460100 Prunus persica HOM05D013263 ORTHO05D009846 9.1e-14 82.4 481 31.4
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 9.1e-14 82.4 470 31.7
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 3.5e-13 80.5 474 31.0
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 1.0e-12 79.0 454 32.2
THA.LOC104803324 Tarenaya hassleriana HOM05D008799 ORTHO05D010975 1.7e-12 78.2 411 29.9
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 1.7e-12 78.2 430 30.7
Nn8g40403 Nelumbo nucifera HOM05D021794 ORTHO05D016335 2.9e-12 77.4 504 30.8
ClCG08G012670 Citrullus lanatus HOM05D019337 ORTHO05D009846 3.8e-12 77.0 450 28.7
MELO3C011188.2 Cucumis melo HOM05D019337 ORTHO05D009846 6.5e-12 76.3 456 29.6
Sed0008235 Sechium edule HOM05D019337 ORTHO05D009846 8.5e-12 75.9 448 30.1
Ah.10g033870 Amaranthus hybridus HOM05D016385 ORTHO05D018262 1.1e-11 75.5 426 31.5
MD08G1128300 Malus domestica HOM05D013263 ORTHO05D009846 2.5e-11 74.3 455 31.2
Lj7C750T8 Lonicera japonica HOM05D031498 ORTHO05D009846 3.2e-11 73.9 511 29.9
PSO063G5953 Papaver somniferum HOM05D021794 ORTHO05D016335 5.5e-11 73.2 485 29.9
Sed0003431 Sechium edule HOM05D019337 ORTHO05D009846 7.2e-11 72.8 460 30.2
EL10Ac2g03757 Beta vulgaris HOM05D016385 ORTHO05D018262 2.1e-10 71.2 446 29.4
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 2.1e-10 71.2 472 28.8
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 2.1e-10 71.2 443 31.2
FAN27G1111 Fragaria x ananassa HOM05D013263 ORTHO05D009846 4.7e-10 70.1 456 32.9
FvH4_2g36751 Fragaria vesca HOM05D013263 ORTHO05D009846 6.1e-10 69.7 456 32.7
TWI32G0873 Tripterygium wilfordii HOM05D013263 ORTHO05D009846 8.0e-10 69.3 430 30.5
Lj8P444T9 Lonicera japonica HOM05D009522 ORTHO05D009846 1.4e-09 68.6 102 50.0
FAN20G1345 Fragaria x ananassa HOM05D013263 ORTHO05D009846 1.8e-09 68.2 452 31.2
RcHm_v2.0_Chr6g0304991 Rosa chinensis HOM05D013263 ORTHO05D009846 3.0e-09 67.4 464 29.7
FAN15G3280 Fragaria x ananassa HOM05D013263 ORTHO05D009846 5.2e-09 66.6 450 29.8
Migut.A00437 Erythranthe guttata HOM05D009522 ORTHO05D009846 8.8e-09 65.9 588 26.0
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 1.1e-08 65.5 68 63.2
Haze_21737 Corylus avellana HOM05D014278 ORTHO05D009846 1.5e-08 65.1 435 29.7
Glyma.14G134700 Glycine max HOM05D016469 ORTHO05D012811 2.0e-08 64.7 439 28.9
Lj8P473T2 Lonicera japonica HOM05D031498 ORTHO05D016335 2.6e-08 64.3 102 48.0
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 5.7e-08 63.2 49 73.5
COL.COLO4_19033 Corchorus olitorius HOM05D019025 ORTHO05D009846 5.7e-08 63.2 482 27.6
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 5.7e-08 63.2 61 63.9
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 5.7e-08 63.2 62 62.9
SalBow8G0117 Salvia bowleyana HOM05D036756 ORTHO05D009846 1.3e-07 62.0 132 40.2
SalBow8G1342 Salvia bowleyana HOM05D036756 ORTHO05D009846 1.3e-07 62.0 132 40.2
MSTRG.1612 Avicennia marina HOM05D036756 ORTHO05D009846 1.7e-07 61.6 435 31.5
Glyma.06G076700 Glycine max HOM05D013197 ORTHO05D012811 1.7e-07 61.6 446 26.7
PSO170G4909 Papaver somniferum HOM05D021794 ORTHO05D016335 1.7e-07 61.6 480 29.2
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 1.7e-07 61.6 49 73.5
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.7e-07 61.6 49 73.5
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.7e-07 61.6 49 73.5
CsaV3_2G031380 Cucumis sativus L. HOM05D019337 ORTHO05D009846 2.2e-07 61.2 465 28.0
ECA240G3142 Erigeron canadensis HOM05D009522 ORTHO05D009846 2.2e-07 61.2 69 62.3
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 2.2e-07 61.2 49 73.5
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 2.8e-07 60.8 77 51.9
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 3.7e-07 60.5 49 71.4
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.7e-07 60.5 49 71.4
Lalb_Chr08g0243541 Lupinus albus HOM05D013197 ORTHO05D012811 3.7e-07 60.5 412 28.4
Atru.chr8.382 Acer truncatum HOM05D003021 ORTHO05D002235 6.3e-07 59.7 49 71.4
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 6.3e-07 59.7 49 71.4
CAN.G673.17 Capsicum annuum HOM05D017514 ORTHO05D009846 8.2e-07 59.3 43 69.8
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 1.1e-06 58.9 49 71.4
HanXRQChr03g0082551 Helianthus annuus HOM05D014278 ORTHO05D009846 1.1e-06 58.9 40 75.0
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 1.1e-06 58.9 49 71.4
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 88 46.6
PSO063G0327 Papaver somniferum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 88 46.6
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 1.1e-06 58.9 50 64.0
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 1.4e-06 58.5 49 69.4
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.4e-06 58.5 71 52.1
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 1.4e-06 58.5 71 52.1
Lsat_1_v5_gn_5_62161 Lactuca sativa HOM05D021794 ORTHO05D016335 1.4e-06 58.5 80 47.5
Oeu000639.1 Olea europaea HOM05D003021 ORTHO05D002235 1.4e-06 58.5 42 73.8
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 1.4e-06 58.5 49 69.4
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 1.4e-06 58.5 35 85.7
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 69.4
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.8e-06 58.2 60 61.7
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 69.4
Migut.K01293 Erythranthe guttata HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 71.4
Gohir.A05G370400 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 69.4
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 1.8e-06 58.2 49 69.4
PGSC0003DMG400026295 Solanum tuberosum HOM05D017514 ORTHO05D009846 1.8e-06 58.2 34 85.3
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 1.8e-06 58.2 66 59.1
EL10Ac2g03069 Beta vulgaris HOM05D003021 ORTHO05D002235 2.4e-06 57.8 85 45.9
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 2.4e-06 57.8 43 76.7
CAN.G479.38 Capsicum annuum HOM05D003021 ORTHO05D022173 2.4e-06 57.8 50 66.0
DCAR_003022 Daucus carota HOM05D009522 ORTHO05D009846 2.4e-06 57.8 467 28.1
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 2.4e-06 57.8 49 69.4
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 2.4e-06 57.8 49 69.4
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 2.4e-06 57.8 443 29.6
THA.LOC104822343 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 2.4e-06 57.8 35 85.7
DCAR_025407 Daucus carota HOM05D003021 ORTHO05D002235 3.1e-06 57.4 65 52.3
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 3.1e-06 57.4 49 69.4
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 3.1e-06 57.4 49 69.4
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 3.1e-06 57.4 81 51.9
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 3.1e-06 57.4 50 64.0
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.1e-06 57.0 49 71.4
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 4.1e-06 57.0 49 71.4
A04p12060 Brassica napus HOM05D003021 ORTHO05D002235 5.3e-06 56.6 34 88.2
BraA04t16870Z Brassica rapa HOM05D003021 ORTHO05D002235 5.3e-06 56.6 34 88.2
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 5.3e-06 56.6 65 61.5
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 5.3e-06 56.6 54 61.1
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 5.3e-06 56.6 49 69.4
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 5.3e-06 56.6 49 71.4
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 5.3e-06 56.6 44 72.7
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 5.3e-06 56.6 49 67.3
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 5.3e-06 56.6 80 48.8
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 7.0e-06 56.2 49 69.4
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 7.0e-06 56.2 49 69.4
MSTRG.15459 Avicennia marina HOM05D003021 ORTHO05D002235 9.1e-06 55.8 49 67.3
CSS0009260 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 9.1e-06 55.8 37 78.4
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 9.1e-06 55.8 44 72.7
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 9.1e-06 55.8 87 49.4


User provided reference genes

Program Settings