Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.3e-190 668.7 328 100.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 3.5e-45 186.4 201 52.2
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.3e-44 184.5 199 51.3
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.0e-44 182.6 201 51.2
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 6.5e-44 182.2 187 58.3
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 8.0e-42 175.3 125 76.0
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.5e-40 168.7 203 50.2
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 9.1e-38 161.8 200 48.5
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 3.5e-37 159.8 297 38.0
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 4.2e-35 152.9 189 48.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.6e-34 151.0 195 46.7
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.0e-34 148.7 200 45.5
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.7e-31 141.0 199 44.7
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.8e-31 139.4 195 47.7
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.8e-30 137.5 194 44.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.6e-29 134.4 204 43.1
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.0e-29 134.0 204 42.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.3e-28 131.3 193 44.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 5.0e-28 129.4 198 43.4
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 6.5e-28 129.0 201 44.8
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.2e-27 126.7 195 41.0
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.1e-26 124.0 202 40.1
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-26 124.0 195 44.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 3.6e-26 123.2 155 46.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 4.7e-26 122.9 200 43.0
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 4.7e-26 122.9 203 42.4
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.7e-26 122.9 192 40.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.7e-26 122.9 192 40.6
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.4e-25 121.3 197 39.6
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.4e-25 121.3 195 42.6
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.8e-25 120.9 192 39.1
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.3e-25 120.6 189 39.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 6.8e-25 119.0 197 39.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 8.8e-25 118.6 232 34.9
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.2e-24 118.2 197 42.6
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.0e-24 117.5 197 40.6
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.6e-24 117.1 200 41.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 3.4e-24 116.7 233 33.9
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 5.7e-24 115.9 199 39.2
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 7.5e-24 115.5 195 41.0
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 9.8e-24 115.2 203 37.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.3e-23 114.8 201 39.3
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 2.8e-23 113.6 256 33.6
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.1e-22 111.7 184 40.8
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.4e-22 111.3 244 33.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 3.1e-22 110.2 197 40.1
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 7.0e-22 109.0 199 37.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 7.0e-22 109.0 212 40.1
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 1.2e-21 108.2 225 37.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.2e-21 108.2 191 38.7
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-21 107.5 239 32.6
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 2.7e-21 107.1 215 39.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.7e-21 107.1 196 38.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.5e-21 106.7 240 32.9
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 3.5e-21 106.7 195 39.5
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.5e-21 106.7 206 43.7
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.9e-21 105.9 203 38.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 5.9e-21 105.9 206 40.3
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.9e-21 105.9 195 42.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.0e-20 105.1 176 39.8
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.9e-20 103.6 195 38.5
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.9e-20 103.6 198 34.8
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 3.8e-20 103.2 206 38.8
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 3.8e-20 103.2 178 39.9
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 3.8e-20 103.2 218 34.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 3.8e-20 103.2 243 32.5
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.6e-20 102.4 174 40.2
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.9e-19 100.9 192 40.1
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.5e-19 100.5 193 39.9
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 4.3e-19 99.8 181 39.8
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 4.3e-19 99.8 174 39.7
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.8e-18 97.1 178 36.5
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-18 97.1 56 83.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.6e-18 96.7 114 51.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.7e-18 96.3 229 33.2
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 8.0e-18 95.5 198 37.9
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 1.0e-17 95.1 197 32.5
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.3e-17 94.0 297 27.6
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.0e-17 93.2 113 50.4
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 6.8e-17 92.4 186 37.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 1.2e-16 91.7 203 32.5
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 2.6e-16 90.5 193 35.8
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.4e-16 90.1 200 34.5
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 7.5e-16 89.0 126 44.4
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.9e-15 87.0 200 38.0
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.9e-15 86.3 199 31.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 8.3e-15 85.5 313 31.0
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.8e-14 84.3 227 30.4
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 1.2e-13 81.6 148 41.2
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.6e-13 81.3 231 30.3
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.7e-13 80.5 228 29.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.5e-13 80.1 193 33.7
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 4.6e-13 79.7 197 29.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 5.9e-13 79.3 174 36.8
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 7.8e-13 79.0 196 32.7
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.0e-12 78.6 185 36.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.7e-12 77.8 192 35.4
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 8.6e-12 75.5 222 30.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 1.9e-11 74.3 303 26.1
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.5e-11 73.9 255 29.8
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 4.3e-11 73.2 193 30.6
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.2e-10 71.6 218 28.4
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 3.6e-10 70.1 218 29.4
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 6.2e-10 69.3 36 86.1
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.8e-09 67.8 220 30.5
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.3e-09 67.4 141 35.5
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 4.0e-09 66.6 219 28.3
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.0e-09 66.6 219 28.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.0e-09 66.6 219 28.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 4.4e-08 63.2 219 28.8
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 5.8e-08 62.8 27 96.3
TAR376G0525 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.8e-08 62.8 82 45.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.5e-08 62.4 97 44.3
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 9.8e-08 62.0 105 38.1
FAN15G2770 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.7e-07 61.2 95 43.2
FAN20G0474 Fragaria x ananassa HOM05D000194 ORTHO05D000069 1.7e-07 61.2 95 43.2
Actinidia34350 Actinidia chinensis HOM05D000194 ORTHO05D000069 2.9e-07 60.5 94 42.6
TWI79G0915 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 2.9e-07 60.5 71 50.7
TAR101G0004 Trochodendron aralioides HOM05D000194 ORTHO05D000069 2.9e-07 60.5 79 46.8
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 3.7e-07 60.1 209 31.1
Cfa004988 Carpinus fangiana HOM05D000194 ORTHO05D000069 3.7e-07 60.1 87 41.4
Oeu042272.1 Olea europaea HOM05D000194 ORTHO05D000069 3.7e-07 60.1 69 53.6
Rhsim02G0125700 Rhododendron simsii HOM05D002871 ORTHO05D003307 3.7e-07 60.1 39 76.9
HanXRQChr10g0305071 Helianthus annuus HOM05D000194 ORTHO05D000069 4.9e-07 59.7 99 39.4
Hma1.2p1_0066F.1_g036290 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 4.9e-07 59.7 69 50.7
MD05G1065100 Malus domestica HOM05D000194 ORTHO05D000069 4.9e-07 59.7 91 44.0
CiPaw.06G134700 Carya illinoinensis HOM05D000194 ORTHO05D000069 6.4e-07 59.3 103 40.8
Dinv42055 Davidia involucrata HOM05D000194 ORTHO05D000069 6.4e-07 59.3 90 44.4
FvH4_2g09030 Fragaria vesca HOM05D000194 ORTHO05D000069 6.4e-07 59.3 87 39.1
FAN24G1806 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.4e-07 59.3 87 39.1
FAN27G2861 Fragaria x ananassa HOM05D000194 ORTHO05D000069 6.4e-07 59.3 87 39.1
MBI10_g18261_MAGBIO Magnolia biondii HOM05D000194 ORTHO05D000069 6.4e-07 59.3 102 43.1
Nitab4.5_0010994g0010 Nicotiana tabacum HOM05D000194 ORTHO05D000069 6.4e-07 59.3 79 48.1
Hma1.2p1_2496F.1_g323330 Hydrangea macrophylla HOM05D000194 ORTHO05D000069 8.3e-07 58.9 66 51.5
Duzib248G1153 Durio zibethinus HOM05D000194 ORTHO05D000069 1.1e-06 58.5 140 34.3
Rhsim11G0178500 Rhododendron simsii HOM05D000194 ORTHO05D000069 1.1e-06 58.5 66 51.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-06 58.5 138 34.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 1.4e-06 58.2 219 30.6
Eucgr.I01279 Eucalyptus grandis HOM05D000194 ORTHO05D000069 1.4e-06 58.2 94 41.5
RcHm_v2.0_Chr6g0264701 Rosa chinensis HOM05D000194 ORTHO05D000069 1.4e-06 58.2 95 42.1
vmacro02094 Vaccinium macrocarpon HOM05D000194 ORTHO05D000069 1.4e-06 58.2 111 38.7
Oeu033655.1 Olea europaea HOM05D000194 ORTHO05D000069 1.9e-06 57.8 69 52.2
Psat5g003720 Pisum sativum HOM05D000194 ORTHO05D000069 1.9e-06 57.8 96 41.7
Sopen01g051890 Solanum pennellii HOM05D000194 ORTHO05D000069 1.9e-06 57.8 43 67.4
TWI31G0165 Tripterygium wilfordii HOM05D000194 ORTHO05D000069 1.9e-06 57.8 65 52.3
TAR381G1695 Trochodendron aralioides HOM05D000194 ORTHO05D000069 1.9e-06 57.8 98 38.8
Lsat_1_v5_gn_5_119080 Lactuca sativa HOM05D000194 ORTHO05D000069 2.4e-06 57.4 105 39.0
MD10G1074000 Malus domestica HOM05D000194 ORTHO05D000069 2.4e-06 57.4 91 42.9
Manes.14G072600 Manihot esculenta HOM05D000194 ORTHO05D000069 2.4e-06 57.4 91 40.7
QL11p044710 Quercus lobata HOM05D000194 ORTHO05D000069 2.4e-06 57.4 70 48.6
DCAR_022979 Daucus carota HOM05D000194 ORTHO05D000069 3.2e-06 57.0 78 46.2
Dinv23511 Davidia involucrata HOM05D000194 ORTHO05D000069 3.2e-06 57.0 93 40.9
Duzib052G0036 Durio zibethinus HOM05D000194 ORTHO05D000069 3.2e-06 57.0 62 54.8
Eucgr.G01683 Eucalyptus grandis HOM05D000194 ORTHO05D000069 3.2e-06 57.0 96 41.7
Lj5A196T49 Lonicera japonica HOM05D000194 ORTHO05D000069 3.2e-06 57.0 93 43.0
Oeu041637.1 Olea europaea HOM05D000194 ORTHO05D000069 3.2e-06 57.0 66 48.5
QL04p027572 Quercus lobata HOM05D000056 ORTHO05D000019 3.2e-06 57.0 99 39.4
Ah.01g019290 Amaranthus hybridus HOM05D000194 ORTHO05D000069 4.1e-06 56.6 95 41.1
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 5.4e-06 56.2 206 26.7
Lj9C373G7 Lonicera japonica HOM05D000194 ORTHO05D000069 5.4e-06 56.2 108 38.9
Potri.004G156000 Populus trichocarpa HOM05D000194 ORTHO05D000069 5.4e-06 56.2 37 75.7
Thecc.02G083900 Theobroma cacao HOM05D000194 ORTHO05D000069 5.4e-06 56.2 64 51.6
HPP92_015319 Vanilla planifolia HOM05D000194 ORTHO05D000069 5.4e-06 56.2 135 32.6
ClCG02G004870 Citrullus lanatus HOM05D000194 ORTHO05D000069 7.0e-06 55.8 58 56.9
CsaV3_7G000080 Cucumis sativus L. HOM05D000194 ORTHO05D000069 7.0e-06 55.8 58 56.9
Prupe.8G095700 Prunus persica HOM05D000194 ORTHO05D000069 7.0e-06 55.8 75 44.0
Sed0008512 Sechium edule HOM05D000194 ORTHO05D000069 7.0e-06 55.8 58 56.9
Sed0008756 Sechium edule HOM05D000194 ORTHO05D000069 7.0e-06 55.8 58 56.9
Solyc01g109700.3 Solanum lycopersicum HOM05D000194 ORTHO05D000069 7.0e-06 55.8 50 58.0
GSVIVG01023783001 Vitis vinifera HOM05D000194 ORTHO05D000069 7.0e-06 55.8 63 52.4
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 9.2e-06 55.5 175 27.4
CANSAT01G3116 Cannabis sativa HOM05D000194 ORTHO05D000069 9.2e-06 55.5 69 46.4
Gorai.005G244200 Gossypium raimondii HOM05D000194 ORTHO05D000069 9.2e-06 55.5 60 53.3
Lj3C1025T10 Lonicera japonica HOM05D000194 ORTHO05D000069 9.2e-06 55.5 76 42.1
Nn4g23576 Nelumbo nucifera HOM05D000194 ORTHO05D000069 9.2e-06 55.5 89 42.7
Nitab4.5_0000136g0340 Nicotiana tabacum HOM05D000194 ORTHO05D000069 9.2e-06 55.5 68 48.5
Nitab4.5_0005482g0010 Nicotiana tabacum HOM05D000194 ORTHO05D000069 9.2e-06 55.5 66 50.0
Peaxi162Scf00008g03526 Petunia axillaris HOM05D000194 ORTHO05D000069 9.2e-06 55.5 71 52.1


User provided reference genes

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