Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.0e-112 410.2 227 100.0
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.1e-95 353.6 197 91.4
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.9e-81 304.3 203 75.4
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.9e-81 304.3 203 75.4
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 1.8e-80 303.1 201 76.6
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.5e-79 299.3 201 75.6
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.1e-77 293.9 204 71.6
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.6e-76 289.3 200 74.5
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 3.2e-74 282.3 187 75.9
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 5.1e-72 275.0 203 69.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.1e-72 275.0 201 70.1
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.1e-71 273.9 205 65.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 1.5e-71 273.5 200 70.0
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.3e-71 272.3 201 69.7
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 4.3e-71 271.9 200 67.5
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 4.3e-71 271.9 196 69.9
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 9.6e-71 270.8 203 71.4
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.1e-70 269.6 200 68.0
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 8.2e-70 267.7 196 68.9
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.1e-69 267.3 191 71.2
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.1e-69 265.8 200 67.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 6.9e-69 264.6 206 68.4
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 1.5e-68 263.5 200 67.0
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.5e-68 263.5 192 68.2
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 5.8e-68 261.5 204 66.2
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 7.6e-68 261.2 194 66.0
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 3.8e-67 258.8 204 65.2
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 8.4e-67 257.7 196 67.9
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 8.4e-67 257.7 202 65.8
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.4e-66 256.9 192 67.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.9e-66 256.5 206 63.1
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.9e-66 256.5 206 63.1
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 1.9e-66 256.5 191 67.0
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.5e-66 256.1 196 66.3
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 3.2e-66 255.8 190 68.9
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 7.1e-66 254.6 206 63.6
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.6e-65 253.4 194 63.9
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 2.1e-65 253.1 200 65.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.1e-65 253.1 198 63.6
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 4.6e-65 251.9 201 63.2
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 7.9e-65 251.1 202 64.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 5.1e-64 248.4 206 60.7
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 6.7e-64 248.1 204 61.8
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 6.7e-64 248.1 193 64.8
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 8.7e-64 247.7 191 63.4
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.1e-63 247.3 198 64.6
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 1.5e-63 246.9 189 68.3
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.5e-63 246.1 203 64.5
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.3e-63 245.7 189 68.3
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 4.3e-63 245.4 191 64.4
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.3e-63 245.4 194 62.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.3e-63 245.4 189 68.3
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 4.3e-63 245.4 191 65.4
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 5.7e-63 245.0 200 64.0
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 5.7e-63 245.0 201 62.7
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 5.7e-63 245.0 200 62.5
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 9.7e-63 244.2 199 62.3
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.3e-62 243.8 201 61.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.6e-62 243.4 199 62.8
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.7e-62 242.3 189 66.7
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 6.3e-62 241.5 200 61.5
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 8.2e-62 241.1 196 60.2
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.4e-61 240.4 197 61.9
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 3.1e-61 239.2 200 60.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 4.1e-61 238.8 200 61.0
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.3e-61 238.4 199 60.3
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.2e-60 237.3 202 62.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.0e-60 236.5 178 68.0
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 2.6e-60 236.1 201 58.7
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 4.5e-60 235.3 202 59.9
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 4.5e-60 235.3 201 62.2
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.7e-59 233.4 202 58.4
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 5.0e-59 231.9 189 62.4
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 6.5e-59 231.5 201 61.2
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-58 230.3 191 61.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.4e-58 230.3 191 61.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.4e-58 230.3 191 61.3
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 7.2e-58 228.0 203 58.1
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 9.4e-58 227.6 203 58.6
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 1.2e-57 227.3 207 60.4
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.6e-57 225.7 191 60.2
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-56 224.2 191 58.1
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.4e-56 223.8 198 56.6
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.4e-56 223.8 191 59.2
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 3.9e-56 222.2 189 61.4
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.5e-55 220.3 189 58.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 7.4e-55 218.0 202 57.4
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 7.4e-55 218.0 202 57.4
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.3e-54 217.2 214 55.1
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.7e-54 216.9 201 57.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.7e-54 216.9 214 54.7
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 4.8e-54 215.3 170 66.5
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.2e-54 214.5 193 58.5
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.4e-53 213.8 192 57.8
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.4e-53 213.0 201 54.7
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 9.1e-53 211.1 193 57.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.5e-52 210.3 204 57.8
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.3e-51 207.2 173 61.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.3e-51 207.2 201 55.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.9e-51 206.1 191 55.5
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 2.9e-51 206.1 191 57.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 3.8e-51 205.7 189 55.6
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 2.5e-50 203.0 139 69.8
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.2e-50 202.2 190 54.2
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.7e-49 199.5 199 52.3
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 3.0e-48 196.1 195 55.9
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 5.1e-48 195.3 191 53.9
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 5.7e-47 191.8 193 52.3
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.2e-44 184.1 129 68.2
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 5.0e-43 178.7 193 49.2
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 4.0e-40 169.1 202 46.0
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.5e-39 167.2 209 46.4
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.1e-37 161.0 193 50.3
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-37 161.0 111 73.0
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.4e-37 160.6 204 48.0
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.1e-37 159.5 124 68.5
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 7.0e-37 158.3 194 45.9
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 9.4e-34 147.9 195 44.6
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 4.8e-30 135.6 188 39.9
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 6.3e-30 135.2 188 40.4
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 6.3e-30 135.2 188 40.4
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.1e-29 134.4 197 41.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 7.0e-29 131.7 188 39.4
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 9.1e-29 131.3 197 40.6
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.5e-28 129.4 82 76.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.1e-25 120.2 186 42.5
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 3.6e-25 119.4 185 38.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 8.8e-24 114.8 185 37.8
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 3.7e-22 109.4 177 36.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 4.9e-22 109.0 192 38.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 2.4e-21 106.7 181 31.5
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.1e-21 106.3 185 36.8
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 7.0e-21 105.1 193 34.7
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.2e-20 104.4 175 39.4
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-15 85.9 61 73.8
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.2e-14 83.6 61 70.5
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.2e-14 83.6 61 70.5
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 2.2e-14 83.6 61 70.5
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.2e-14 83.6 61 72.1
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 2.4e-13 80.1 95 42.1
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 7.0e-13 78.6 132 33.3
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 4.6e-12 75.9 87 42.5
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 3.3e-10 69.7 127 38.6
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 4.3e-10 69.3 65 52.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 5.6e-10 68.9 57 54.4
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 5.2e-08 62.4 188 28.2
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 5.2e-08 62.4 114 30.7
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 1.7e-06 57.4 57 49.1
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 8.3e-06 55.1 85 45.9


User provided reference genes

Program Settings