Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0161200 Rhododendron simsii HOM05D002817 ORTHO05D003138 5.6e-83 310.8 152 100.0
vmacro05160 Vaccinium macrocarpon HOM05D002817 ORTHO05D003138 9.7e-51 203.8 135 75.6
Actinidia14097 Actinidia chinensis HOM05D002817 ORTHO05D003138 7.5e-35 151.0 141 58.9
Dinv18187 Davidia involucrata HOM05D002817 ORTHO05D003138 2.2e-31 139.4 149 52.3
CSS0034536 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 1.8e-28 129.8 154 52.6
Cpa.g.sc187.14 Carica papaya HOM05D002817 ORTHO05D003138 4.0e-20 102.1 152 45.4
SGA_v2.0_scaffold20G09087 Striga asiatica HOM05D002817 ORTHO05D003138 8.8e-20 100.9 147 44.9
Thecc.09G020500 Theobroma cacao HOM05D002817 ORTHO05D003138 1.5e-19 100.1 153 45.1
Manes.16G125200 Manihot esculenta HOM05D002817 ORTHO05D003138 4.4e-19 98.6 154 46.1
Prupe.1G485000 Prunus persica HOM05D002817 ORTHO05D003138 1.7e-18 96.7 152 43.4
COL.COLO4_18900 Corchorus olitorius HOM05D002817 ORTHO05D003138 2.2e-18 96.3 149 45.6
Duzib187G0671 Durio zibethinus HOM05D002817 ORTHO05D003138 8.3e-18 94.4 145 43.4
Migut.A00014 Erythranthe guttata HOM05D002817 ORTHO05D003138 1.1e-17 94.0 142 45.8
MD15G1129400 Malus domestica HOM05D002817 ORTHO05D003138 1.4e-17 93.6 155 42.6
Potri.018G023400 Populus trichocarpa HOM05D002817 ORTHO05D003138 1.4e-17 93.6 146 43.2
QL02p020845 Quercus lobata HOM05D002817 ORTHO05D003138 1.8e-17 93.2 161 41.6
EL10Ac2g04165 Beta vulgaris HOM05D002817 ORTHO05D003138 3.1e-17 92.4 166 41.0
CiPaw.07G226100 Carya illinoinensis HOM05D002817 ORTHO05D003138 5.4e-17 91.7 154 44.8
GSVIVG01035935001 Vitis vinifera HOM05D002817 ORTHO05D003138 7.0e-17 91.3 135 45.9
Ciclev10008054m.g Citrus clementina HOM05D002817 ORTHO05D003138 9.2e-17 90.9 164 42.1
Hund04439 Selenicereus undatus HOM05D002817 ORTHO05D003138 9.2e-17 90.9 164 41.5
Gohir.D06G101800 Gossypium hirsutum HOM05D002817 ORTHO05D003138 1.2e-16 90.5 154 45.5
Gorai.010G116800 Gossypium raimondii HOM05D002817 ORTHO05D003138 1.2e-16 90.5 154 45.5
Gorai.013G214000 Gossypium raimondii HOM05D002817 ORTHO05D003138 1.6e-16 90.1 149 43.0
Atru.chr7.2483 Acer truncatum HOM05D002817 ORTHO05D003138 2.0e-16 89.7 163 39.9
RcHm_v2.0_Chr6g0297361 Rosa chinensis HOM05D002817 ORTHO05D003138 2.0e-16 89.7 144 43.1
TAR636G2918 Trochodendron aralioides HOM05D002817 ORTHO05D003138 3.5e-16 89.0 158 43.7
MSTRG.26023 Avicennia marina HOM05D002817 ORTHO05D003138 5.9e-16 88.2 142 41.5
Gohir.D13G188600 Gossypium hirsutum HOM05D002817 ORTHO05D003138 7.8e-16 87.8 149 42.3
Cc08_g00320 Coffea canephora HOM05D002817 ORTHO05D003138 1.0e-15 87.4 158 41.8
Gohir.A06G099600 Gossypium hirsutum HOM05D002817 ORTHO05D003138 1.0e-15 87.4 150 44.7
Lsat_1_v5_gn_6_115600 Lactuca sativa HOM05D002817 ORTHO05D003138 1.3e-15 87.0 140 45.7
CANSAT25G0276 Cannabis sativa HOM05D002817 ORTHO05D003138 1.7e-15 86.7 146 41.1
DCAR_003108 Daucus carota HOM05D002817 ORTHO05D003138 2.9e-15 85.9 132 37.9
Thhalv10024993m.g Eutrema salsugineum HOM05D002817 ORTHO05D003138 1.1e-14 84.0 145 42.8
PGR044G1422 Punica granatum HOM05D002817 ORTHO05D003138 1.1e-14 84.0 157 38.2
Sp7g29860 Schrenkiella parvula HOM05D002817 ORTHO05D003138 1.1e-14 84.0 149 40.3
Gohir.A13G180800 Gossypium hirsutum HOM05D002817 ORTHO05D003138 1.5e-14 83.6 149 42.3
TAR625G1156 Trochodendron aralioides HOM05D002817 ORTHO05D003138 4.3e-14 82.0 147 40.8
FAN15G0738 Fragaria x ananassa HOM05D002817 ORTHO05D003138 9.5e-14 80.9 104 46.2
Nn2g12201 Nelumbo nucifera HOM05D002817 ORTHO05D003138 9.5e-14 80.9 148 39.2
PSO210G2755 Papaver somniferum HOM05D002817 ORTHO05D003138 9.5e-14 80.9 145 43.4
TWI34G0888 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 1.2e-13 80.5 140 40.7
Nitab4.5_0000206g0160 Nicotiana tabacum HOM05D002817 ORTHO05D003138 1.6e-13 80.1 135 42.2
ClCG05G016640 Citrullus lanatus HOM05D002817 ORTHO05D003138 2.8e-13 79.3 153 39.2
Aqoxy7G03588 Aquilegia oxysepala HOM05D002817 ORTHO05D003138 3.6e-13 79.0 161 36.0
FvH4_2g28590 Fragaria vesca HOM05D002817 ORTHO05D003138 3.6e-13 79.0 113 42.5
FAN20G0528 Fragaria x ananassa HOM05D002817 ORTHO05D003138 3.6e-13 79.0 163 37.4
FAN24G3314 Fragaria x ananassa HOM05D002817 ORTHO05D003138 3.6e-13 79.0 113 42.5
Nn8g39662 Nelumbo nucifera HOM05D002817 ORTHO05D003138 8.0e-13 77.8 114 44.7
FAN27G1900 Fragaria x ananassa HOM05D002817 ORTHO05D003138 1.0e-12 77.4 113 42.5
BcaC09g51995 Brassica carinata HOM05D002817 ORTHO05D003138 1.4e-12 77.0 151 37.7
Dinv42930 Davidia involucrata HOM05D002817 ORTHO05D003138 1.4e-12 77.0 142 40.1
Dinv43170 Davidia involucrata HOM05D002817 ORTHO05D003138 1.4e-12 77.0 142 40.1
Aa31LG2G17890 Aethionema arabicum HOM05D002817 ORTHO05D003138 1.8e-12 76.6 145 40.0
Haze_21479 Corylus avellana HOM05D002817 ORTHO05D003138 1.8e-12 76.6 102 43.1
PSO210G7320 Papaver somniferum HOM05D002817 ORTHO05D003138 2.3e-12 76.3 97 50.5
Sopen06g008500 Solanum pennellii HOM05D002817 ORTHO05D003138 2.3e-12 76.3 135 43.0
Nitab4.5_0005543g0010 Nicotiana tabacum HOM05D002817 ORTHO05D003138 4.0e-12 75.5 140 40.7
Actinidia04233 Actinidia chinensis HOM05D002817 ORTHO05D003138 5.2e-12 75.1 132 43.2
MBI15_g25753_MAGBIO Magnolia biondii HOM05D002817 ORTHO05D003138 5.2e-12 75.1 148 37.2
ECA246G0827 Erigeron canadensis HOM05D002817 ORTHO05D003138 8.9e-12 74.3 128 43.0
Ca_21634_v3 Cicer arietinum L. HOM05D002817 ORTHO05D003138 1.5e-11 73.6 112 42.9
Sc06g0000500 Simmondsia chinensis HOM05D002817 ORTHO05D003138 1.5e-11 73.6 147 38.1
MELO3C016993.2 Cucumis melo HOM05D002817 ORTHO05D003138 2.0e-11 73.2 144 38.9
QL02p090852 Quercus lobata HOM05D002817 ORTHO05D003138 2.0e-11 73.2 169 37.3
C01p06870 Brassica napus HOM05D002817 ORTHO05D003138 3.4e-11 72.4 152 37.5
BolC1t00684H Brassica oleracea HOM05D002817 ORTHO05D003138 3.4e-11 72.4 152 37.5
BraA01t00590Z Brassica rapa HOM05D002817 ORTHO05D003138 4.4e-11 72.0 150 38.0
Carub.0007s0849 Capsella rubella HOM05D002817 ORTHO05D003138 4.4e-11 72.0 126 40.5
AL7G19830 Arabidopsis lyrata HOM05D002817 ORTHO05D003138 5.7e-11 71.6 146 40.4
MBI14_g41054_MAGBIO Magnolia biondii HOM05D002817 ORTHO05D003138 5.7e-11 71.6 149 38.9
A01p06230 Brassica napus HOM05D002817 ORTHO05D003138 7.5e-11 71.2 152 37.5
CsaV3_4G036940 Cucumis sativus L. HOM05D002817 ORTHO05D003138 9.8e-11 70.9 144 37.5
Sabra18G0100800 Salix brachista HOM05D002817 ORTHO05D003138 9.8e-11 70.9 103 42.7
AT4G32060 Arabidopsis thaliana HOM05D002817 ORTHO05D003138 1.7e-10 70.1 146 39.7
Cfa013116 Carpinus fangiana HOM05D001369 ORTHO05D001235 2.9e-10 69.3 90 44.4
Glyma.17G107000 Glycine max HOM05D002817 ORTHO05D003138 4.9e-10 68.6 89 46.1
Glyma.13G163900 Glycine max HOM05D002817 ORTHO05D003138 1.4e-09 67.0 95 45.3
Phvul.001G049500 Phaseolus vulgaris HOM05D002817 ORTHO05D003138 1.8e-09 66.6 145 37.9
Sabra18G0099300 Salix brachista HOM05D002817 ORTHO05D003138 1.8e-09 66.6 149 35.6
TPR.G28515 Trifolium pratense HOM05D002817 ORTHO05D003138 1.8e-09 66.6 91 45.1
CARHR239960 Cardamine hirsuta HOM05D002817 ORTHO05D003138 2.4e-09 66.2 147 36.1
CDE04G1762 Ceratophyllum demersum HOM05D002817 ORTHO05D003138 2.4e-09 66.2 162 32.1
Medtr4g116190 Medicago truncatula HOM05D002817 ORTHO05D003138 2.4e-09 66.2 91 44.0
THA.LOC104803848 Tarenaya hassleriana HOM05D002817 ORTHO05D003138 2.4e-09 66.2 156 32.7
Sabra18G0101300 Salix brachista HOM05D002817 ORTHO05D003138 3.2e-09 65.9 150 36.7
Lj4g0012706 Lotus japonicus HOM05D002817 ORTHO05D003138 7.0e-09 64.7 87 44.8
ClCG02G017150 Citrullus lanatus HOM05D002817 ORTHO05D003138 9.2e-09 64.3 118 44.1
Psat5g031560 Pisum sativum HOM05D002817 ORTHO05D003138 9.2e-09 64.3 135 36.3
Potri.018G118008 Populus trichocarpa HOM05D002817 ORTHO05D003138 9.2e-09 64.3 155 36.1
THA.LOC104804503 Tarenaya hassleriana HOM05D002817 ORTHO05D003138 9.2e-09 64.3 157 36.3
Rhsim01G0050500 Rhododendron simsii HOM05D002817 ORTHO05D003138 1.2e-08 63.9 67 52.2
VMungo1215G2260 Vigna mungo HOM05D002817 ORTHO05D003138 1.2e-08 63.9 95 40.0
Medtr3g106550 Medicago truncatula HOM05D002817 ORTHO05D003138 1.6e-08 63.5 135 34.8
Gohir.A08G091200 Gossypium hirsutum HOM05D002817 ORTHO05D003138 2.7e-08 62.8 154 36.4
VMungo0647G0219 Vigna mungo HOM05D002817 ORTHO05D003138 2.7e-08 62.8 139 37.4
CSS0024503 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 3.5e-08 62.4 95 46.3
Phvul.003G172800 Phaseolus vulgaris HOM05D002817 ORTHO05D003138 3.5e-08 62.4 91 44.0
Sabra18G0098800 Salix brachista HOM05D002817 ORTHO05D003138 4.6e-08 62.0 142 37.3
Atru.chr7.297 Acer truncatum HOM05D002817 ORTHO05D003138 5.9e-08 61.6 87 47.1
arahy.Tifrunner.gnm1.ann1.TXDQ7E Arachis hypogaea HOM05D002817 ORTHO05D003138 5.9e-08 61.6 168 33.9
CSS0021378 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 5.9e-08 61.6 95 44.2
CSS0000464 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 7.8e-08 61.2 95 44.2
Sed0015380 Sechium edule HOM05D002817 ORTHO05D003138 7.8e-08 61.2 152 36.2
vmacro07756 Vaccinium macrocarpon HOM05D002817 ORTHO05D003138 7.8e-08 61.2 169 34.3
Ciclev10010671m.g Citrus clementina HOM05D002817 ORTHO05D003138 1.0e-07 60.8 75 48.0
Lj5g0013044 Lotus japonicus HOM05D002817 ORTHO05D003138 1.0e-07 60.8 94 42.6
Potri.018G118089 Populus trichocarpa HOM05D002817 ORTHO05D003138 1.0e-07 60.8 152 36.8
BcaNung03135 Brassica carinata HOM05D002817 ORTHO05D003138 1.3e-07 60.5 145 38.6
HanXRQChr16g0511421 Helianthus annuus HOM05D002817 ORTHO05D003138 1.3e-07 60.5 154 35.1
Psat4g034360 Pisum sativum HOM05D002817 ORTHO05D003138 1.3e-07 60.5 120 38.3
Rhsim01G0050600 Rhododendron simsii HOM05D002817 ORTHO05D003138 1.3e-07 60.5 136 39.7
Lalb_Chr07g0179391 Lupinus albus HOM05D002817 ORTHO05D003138 1.7e-07 60.1 132 35.6
Thecc.09G138200 Theobroma cacao HOM05D002817 ORTHO05D003138 1.7e-07 60.1 88 42.0
CsaV3_2G003630 Cucumis sativus L. HOM05D002817 ORTHO05D003138 2.3e-07 59.7 94 43.6
arahy.Tifrunner.gnm1.ann1.1CW7CI Arachis hypogaea HOM05D002817 ORTHO05D003138 3.9e-07 58.9 167 33.5
CSS0000988 Camellia sinensis var. sinensis HOM05D002817 ORTHO05D003138 5.0e-07 58.5 116 40.5
DCAR_009346 Daucus carota HOM05D002817 ORTHO05D003138 5.0e-07 58.5 53 54.7
PGR142G3874 Punica granatum HOM05D002817 ORTHO05D003138 5.0e-07 58.5 84 41.7
TPR.G38931 Trifolium pratense HOM05D002817 ORTHO05D003138 5.0e-07 58.5 149 32.9
TWI63G0067 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 5.0e-07 58.5 133 36.1
TWI63G1529 Tripterygium wilfordii HOM05D002817 ORTHO05D003138 5.0e-07 58.5 133 36.8
Migut.J01231 Erythranthe guttata HOM05D002817 ORTHO05D003138 6.6e-07 58.2 61 52.5
CANSAT11G1075 Cannabis sativa HOM05D002817 ORTHO05D003138 8.6e-07 57.8 150 30.7
Gorai.003G046800 Gossypium raimondii HOM05D002817 ORTHO05D003138 8.6e-07 57.8 63 50.8
Gohir.D08G101700 Gossypium hirsutum HOM05D002817 ORTHO05D003138 1.1e-06 57.4 85 41.2
Gorai.004G109700 Gossypium raimondii HOM05D002817 ORTHO05D003138 1.1e-06 57.4 85 41.2
Prupe.7G257300 Prunus persica HOM05D002817 ORTHO05D003138 1.1e-06 57.4 96 44.8
Gohir.D03G045650 Gossypium hirsutum HOM05D002817 ORTHO05D003138 1.9e-06 56.6 31 77.4
Psat6g028080 Pisum sativum HOM05D001369 ORTHO05D001235 1.9e-06 56.6 151 32.5
Lsat_1_v5_gn_7_46821 Lactuca sativa HOM05D002817 ORTHO05D003138 2.5e-06 56.2 45 62.2
AUR62011233 Chenopodium quinoa HOM05D002817 ORTHO05D003138 4.3e-06 55.5 79 41.8
Nitab4.5_0002134g0010 Nicotiana tabacum HOM05D002817 ORTHO05D003138 4.3e-06 55.5 43 53.5
Os02g0613000 Oryza sativa ssp. japonica HOM05D002817 ORTHO05D003138 4.3e-06 55.5 36 61.1
Lalb_Chr11g0063631 Lupinus albus HOM05D002817 ORTHO05D003138 5.6e-06 55.1 96 41.7
Sc08g0005920 Simmondsia chinensis HOM05D002817 ORTHO05D003138 5.6e-06 55.1 30 76.7
MELO3C004433.2 Cucumis melo HOM05D002817 ORTHO05D003138 7.3e-06 54.7 125 37.6
Duzib168G1641 Durio zibethinus HOM05D002817 ORTHO05D003138 7.3e-06 54.7 151 35.1
PGSC0003DMG400017023 Solanum tuberosum HOM05D000015 ORTHO05D000249 7.3e-06 54.7 39 59.0
arahy.Tifrunner.gnm1.ann1.MIVF0X Arachis hypogaea HOM05D002817 ORTHO05D003138 9.5e-06 54.3 29 79.3


User provided reference genes

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