Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 2.3e-76 288.9 150 100.0
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 4.2e-22 108.6 89 62.9
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.2e-21 107.1 70 78.6
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 6.0e-21 104.8 90 60.0
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 2.3e-20 102.8 69 75.4
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 5.1e-20 101.7 90 61.1
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 5.1e-20 101.7 69 71.0
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.1e-19 100.5 87 59.8
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.1e-19 100.5 87 59.8
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.5e-19 100.1 67 79.1
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.5e-19 100.1 69 71.0
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.5e-19 100.1 56 87.5
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 1.9e-19 99.8 86 61.6
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 2.5e-19 99.4 87 59.8
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 3.3e-19 99.0 69 69.6
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 4.3e-19 98.6 89 56.2
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 5.7e-19 98.2 68 73.5
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 1.6e-18 96.7 86 58.1
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 1.6e-18 96.7 69 68.1
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 2.2e-18 96.3 67 71.6
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 2.2e-18 96.3 71 63.4
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 4.8e-18 95.1 69 63.8
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 4.8e-18 95.1 91 59.3
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 4.8e-18 95.1 67 71.6
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 6.3e-18 94.7 65 69.2
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 6.3e-18 94.7 69 63.8
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 8.2e-18 94.4 81 59.3
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.4e-17 93.6 90 54.4
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 2.4e-17 92.8 89 52.8
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 4.1e-17 92.0 70 64.3
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 4.1e-17 92.0 68 64.7
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 5.3e-17 91.7 88 56.8
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 6.9e-17 91.3 71 63.4
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.5e-16 90.1 67 65.7
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 3.4e-16 89.0 67 64.2
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 3.4e-16 89.0 78 60.3
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 3.4e-16 89.0 81 56.8
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 3.4e-16 89.0 69 60.9
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 5.9e-16 88.2 68 60.3
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 5.9e-16 88.2 68 60.3
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 5.9e-16 88.2 67 64.2
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 5.9e-16 88.2 64 70.3
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 5.9e-16 88.2 64 70.3
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 1.0e-15 87.4 71 57.7
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 1.0e-15 87.4 69 58.0
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 1.3e-15 87.0 67 61.2
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.7e-15 86.7 67 62.7
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.7e-15 86.7 68 61.8
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 1.7e-15 86.7 67 62.7
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.7e-15 86.7 63 65.1
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 2.2e-15 86.3 68 61.8
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 2.9e-15 85.9 101 47.5
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 3.8e-15 85.5 90 54.4
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 5.0e-15 85.1 60 66.7
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 6.5e-15 84.7 67 59.7
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 1.1e-14 84.0 67 59.7
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 1.4e-14 83.6 66 62.1
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 1.4e-14 83.6 101 47.5
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.4e-14 83.6 82 57.3
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 2.5e-14 82.8 64 62.5
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 2.5e-14 82.8 72 59.7
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 3.2e-14 82.4 94 45.7
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 3.2e-14 82.4 69 60.9
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 3.2e-14 82.4 65 61.5
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 5.5e-14 81.6 67 61.2
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 9.3e-14 80.9 81 54.3
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 1.2e-13 80.5 67 59.7
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.7e-13 79.3 82 56.1
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 3.6e-13 79.0 66 57.6
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 3.6e-13 79.0 66 57.6
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 4.6e-13 78.6 102 47.1
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 4.6e-13 78.6 66 59.1
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 6.1e-13 78.2 66 57.6
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 1.4e-12 77.0 66 54.5
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 2.3e-12 76.3 63 55.6
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 3.0e-12 75.9 84 45.2
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 3.9e-12 75.5 66 57.6
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 5.1e-12 75.1 77 53.2
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 8.8e-12 74.3 67 59.7
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 1.1e-11 73.9 68 51.5
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.1e-11 73.9 66 56.1
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.5e-11 73.6 68 52.9
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 2.5e-11 72.8 100 43.0
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 9.7e-11 70.9 83 48.2
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.8e-10 68.6 56 62.5
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 8.2e-10 67.8 69 49.3
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 2.4e-09 66.2 74 48.6
Rhsim06G0116500 Rhododendron simsii HOM05D003261 ORTHO05D004230 2.0e-08 63.2 42 69.0
Rhsim07G0177600 Rhododendron simsii HOM05D003397 ORTHO05D339796 7.7e-08 61.2 41 73.2
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.0e-07 60.8 36 83.3
Rhsim04G0224200 Rhododendron simsii HOM05D003261 ORTHO05D004230 1.3e-07 60.5 41 70.7
vmacro08167 Vaccinium macrocarpon HOM05D003261 ORTHO05D004230 1.3e-07 60.5 42 66.7
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 5.0e-07 58.5 53 54.7
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 6.5e-07 58.2 53 56.6
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 5.5e-06 55.1 109 35.8


User provided reference genes

Program Settings