Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.1e-137 493.4 263 100.0
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.2e-90 336.3 368 59.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.2e-77 293.9 269 63.2
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 2.0e-72 276.6 263 61.6
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.2e-70 268.1 261 61.7
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 4.1e-65 252.3 262 56.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.0e-64 250.0 272 53.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.5e-62 243.0 201 68.2
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.3e-62 242.7 269 53.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 4.3e-62 242.3 266 54.9
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 4.7e-61 238.8 264 54.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 6.1e-61 238.4 260 56.2
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.4e-60 237.3 265 54.3
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 4.0e-60 235.7 268 53.0
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 6.8e-60 235.0 264 53.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.0e-59 233.4 260 51.9
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.0e-59 233.4 265 55.1
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.6e-59 233.0 270 50.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.6e-59 233.0 265 55.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 7.5e-59 231.5 260 51.5
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.7e-58 230.3 261 52.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.7e-58 230.3 254 57.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.9e-58 229.6 270 52.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.8e-57 226.9 265 52.5
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.8e-57 226.9 260 52.7
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.4e-57 226.5 250 55.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.1e-57 225.7 262 54.6
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 4.1e-57 225.7 261 54.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 4.1e-57 225.7 262 52.7
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.1e-57 225.7 254 54.7
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 5.4e-57 225.3 263 53.2
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 7.0e-57 224.9 263 52.9
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 7.0e-57 224.9 269 52.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 9.2e-57 224.6 262 56.1
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.2e-57 224.6 265 50.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.2e-56 224.2 275 49.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 2.0e-56 223.4 269 50.6
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.7e-56 223.0 257 53.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.7e-56 223.0 257 53.3
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.7e-56 223.0 191 64.4
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.0e-55 221.1 261 51.3
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.0e-55 221.1 266 48.5
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.0e-55 221.1 270 53.7
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.3e-55 220.7 264 51.1
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.9e-55 219.2 264 50.0
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 5.0e-55 218.8 272 53.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 6.6e-55 218.4 264 51.5
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.5e-54 217.2 256 54.3
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.9e-54 216.9 264 52.3
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.5e-54 216.5 256 53.9
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 5.6e-54 215.3 257 52.5
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 7.3e-54 214.9 281 51.2
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 7.3e-54 214.9 265 51.3
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-53 213.8 266 50.0
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.8e-53 213.0 293 48.8
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.0e-53 211.5 280 50.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 6.8e-52 208.4 266 49.2
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.5e-51 207.2 240 51.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.0e-51 206.8 257 49.4
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 3.4e-51 206.1 244 52.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 4.4e-51 205.7 269 48.0
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 9.8e-51 204.5 267 49.8
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.8e-51 204.5 267 47.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 9.8e-51 204.5 257 50.2
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.7e-50 203.8 273 48.7
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 8.3e-50 201.4 265 46.4
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.4e-49 200.7 155 68.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 4.1e-49 199.1 266 49.6
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 7.0e-49 198.4 330 42.7
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 7.0e-49 198.4 262 48.1
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 9.2e-49 198.0 256 48.4
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.6e-48 197.2 265 51.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 1.6e-48 197.2 265 49.1
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 7.8e-48 194.9 257 44.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.0e-47 194.5 265 49.1
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.3e-47 194.1 299 46.5
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 3.0e-47 193.0 260 46.5
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 5.0e-47 192.2 184 59.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 6.6e-47 191.8 269 46.8
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-46 191.0 277 46.6
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 5.6e-46 188.7 272 46.7
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 5.6e-46 188.7 272 46.7
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.2e-45 187.6 201 56.2
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.1e-45 186.8 263 43.0
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 2.8e-45 186.4 267 45.7
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.8e-45 186.4 263 50.2
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 3.6e-45 186.0 201 53.2
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 4.7e-45 185.7 272 46.7
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 4.7e-45 185.7 275 43.3
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.1e-44 184.5 263 46.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-44 184.5 277 45.8
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-44 184.5 277 45.5
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.4e-44 184.1 265 46.0
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.3e-44 183.3 280 46.1
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.3e-44 183.3 277 45.1
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 3.1e-44 183.0 267 44.2
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 3.1e-44 183.0 268 44.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 6.8e-44 181.8 268 47.0
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.2e-43 181.0 257 47.5
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.2e-43 181.0 274 45.6
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.6e-43 179.9 258 46.5
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 3.4e-43 179.5 263 44.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.8e-43 178.7 271 45.8
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.3e-42 177.6 256 44.9
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.3e-42 177.6 251 45.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 1.3e-42 177.6 271 45.8
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.7e-42 177.2 263 47.1
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.9e-42 176.4 255 43.9
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 2.9e-42 176.4 267 44.9
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.9e-41 173.7 254 46.1
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.9e-41 173.7 259 45.9
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 5.4e-41 172.2 160 56.2
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 9.2e-41 171.4 160 58.1
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.2e-40 171.0 265 45.7
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-40 170.2 269 44.6
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-40 169.9 268 44.8
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.5e-40 169.5 263 45.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 4.6e-40 169.1 265 40.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-39 167.5 156 54.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.3e-38 162.9 270 39.6
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 9.5e-38 161.4 265 46.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.1e-36 157.9 244 45.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 2.0e-35 153.7 163 49.7
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 2.6e-35 153.3 265 42.6
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.1e-33 147.9 373 34.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 8.7e-31 138.3 160 52.5
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.9e-30 137.1 136 66.9
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.4e-28 130.2 131 51.9
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 6.9e-28 128.6 259 40.9
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 4.4e-27 125.9 75 92.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.7e-26 124.0 198 36.4
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-25 120.9 214 36.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 6.6e-23 112.1 121 48.8
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 3.6e-21 106.3 173 43.9
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 8.1e-21 105.1 126 46.8
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.0e-20 102.8 232 37.5
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.9e-20 102.1 137 43.8
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.9e-20 102.1 67 71.6
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 4.5e-19 99.4 142 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.9e-18 95.9 202 35.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.6e-16 89.4 230 38.7
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 6.0e-16 89.0 183 33.3
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 6.0e-16 89.0 140 48.6
Rhsim01G0127300 Rhododendron simsii HOM05D033462 ORTHO05D005376 1.0e-15 88.2 114 56.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.8e-15 87.4 60 61.7
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 3.9e-15 86.3 101 46.5
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-13 81.3 141 41.8
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.0e-11 73.9 71 57.7
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 3.5e-08 63.2 54 53.7
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 4.6e-08 62.8 49 57.1
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 4.6e-08 62.8 49 57.1
RhsimUnG0003200 Rhododendron simsii HOM05D023486 ORTHO05D339469 7.9e-08 62.0 42 73.8
Rhsim11G0046800 Rhododendron simsii HOM05D033462 ORTHO05D005376 8.7e-07 58.5 46 73.9
RhsimUnG0015000 Rhododendron simsii HOM05D023486 ORTHO05D005376 4.3e-06 56.2 42 66.7
arahy.Tifrunner.gnm1.ann1.FCA0JR Arachis hypogaea HOM05D004579 ORTHO05D005376 5.6e-06 55.8 104 38.5


User provided reference genes

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