Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.1e-176 623.2 315 100.0
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.4e-141 506.5 344 79.4
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.6e-140 503.1 340 78.5
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.8e-139 499.6 319 81.2
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.6e-135 486.5 322 77.3
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.5e-133 479.9 315 75.6
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.2e-133 478.8 330 72.1
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 7.2e-133 477.6 349 71.9
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 7.2e-133 477.6 328 72.6
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 1.6e-132 476.5 324 74.4
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.7e-132 475.7 349 72.8
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.0e-132 474.2 315 74.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 8.0e-132 474.2 315 75.6
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.4e-131 473.4 331 72.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 6.7e-131 471.1 327 70.9
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-130 469.2 332 70.5
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-130 469.2 332 70.5
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.6e-130 469.2 329 72.0
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.6e-130 469.2 316 76.6
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 2.2e-129 466.1 315 73.7
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 4.8e-129 464.9 333 71.2
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 5.3e-128 461.5 329 70.5
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 7.0e-128 461.1 316 74.1
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.7e-127 459.1 328 69.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 4.5e-127 458.4 338 70.7
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 7.7e-127 457.6 326 70.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.0e-126 457.2 340 69.4
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.2e-126 456.1 326 70.2
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 2.9e-126 455.7 330 68.8
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 4.2e-125 451.8 386 61.9
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.2e-124 450.3 337 69.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 3.6e-124 448.7 340 69.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.0e-123 447.2 337 68.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.0e-123 447.2 327 68.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.4e-123 446.8 316 70.6
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 3.0e-123 445.7 323 70.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 5.7e-122 441.4 327 67.9
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 9.8e-122 440.7 331 69.2
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.3e-121 440.3 323 68.7
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.8e-121 439.1 338 67.5
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 6.3e-121 438.0 385 61.0
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.4e-120 436.8 315 71.4
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-119 433.7 318 69.8
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.7e-119 432.6 274 78.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 4.5e-119 431.8 316 70.9
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 4.5e-119 431.8 331 67.4
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 5.9e-119 431.4 390 59.7
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 7.7e-119 431.0 331 66.8
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.3e-118 430.3 324 66.4
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.3e-118 430.3 330 66.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.7e-118 429.9 329 65.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 5.0e-118 428.3 330 67.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.5e-118 427.9 358 64.8
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 1.6e-116 423.3 375 60.8
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 2.1e-116 422.9 337 65.0
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.8e-116 422.5 335 66.3
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.7e-116 421.8 338 62.7
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.0e-115 420.6 384 59.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.0e-115 419.1 356 61.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.0e-115 419.1 389 60.7
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.2e-114 417.2 382 60.2
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 1.5e-114 416.8 337 66.2
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 2.6e-114 416.0 380 60.0
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.4e-114 415.6 327 64.2
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 5.7e-114 414.8 362 60.8
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 2.8e-113 412.5 330 66.7
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 3.7e-113 412.1 334 64.1
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 6.3e-113 411.4 294 70.1
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 6.3e-113 411.4 294 70.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.8e-112 409.8 294 70.1
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.4e-112 408.3 295 72.2
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 1.6e-111 406.8 343 61.5
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.0e-111 406.4 333 63.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.7e-111 406.0 393 56.5
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 3.3e-109 399.1 330 62.4
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 6.1e-108 394.8 391 56.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.5e-106 390.2 326 63.2
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.2e-105 386.3 354 60.7
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 8.3e-105 384.4 337 59.1
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.1e-104 384.0 344 61.3
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 2.7e-103 379.4 308 63.0
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.3e-101 372.1 295 63.7
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.3e-101 372.1 374 53.5
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 4.7e-100 368.6 214 79.0
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 6.2e-100 368.2 310 63.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 8.0e-100 367.9 207 80.7
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 8.0e-100 367.9 338 56.5
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.5e-98 363.6 224 76.3
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.0e-98 363.2 279 67.4
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 5.8e-98 361.7 376 54.5
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.9e-97 358.6 295 64.1
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.2e-96 355.9 321 57.6
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 2.7e-95 352.8 319 57.1
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 2.7e-95 352.8 258 67.1
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 3.0e-94 349.4 317 59.9
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 2.5e-93 346.3 320 56.6
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 4.3e-93 345.5 317 56.2
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 1.4e-91 340.5 324 54.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 2.0e-90 336.7 319 53.9
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.6e-90 336.3 340 53.8
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.7e-86 323.6 315 53.3
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-85 320.9 168 92.9
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.8e-84 316.2 386 49.2
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.1e-84 314.7 322 50.9
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 9.9e-82 307.8 325 49.2
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 9.9e-82 307.8 325 49.2
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 1.3e-81 307.4 248 66.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 6.4e-81 305.1 325 48.9
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.2e-79 300.8 323 49.8
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.7e-79 299.7 322 49.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 4.6e-79 298.9 323 49.8
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 7.8e-79 298.1 324 49.7
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.7e-78 297.0 319 49.8
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 8.7e-78 294.7 324 48.5
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.7e-78 294.7 364 49.7
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 7.3e-77 291.6 323 47.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.0e-74 283.5 174 78.7
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 2.5e-69 266.5 159 77.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 8.1e-68 261.5 253 54.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 3.4e-66 256.1 153 80.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 3.4e-66 256.1 264 48.5
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.4e-59 234.2 303 45.2
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 1.4e-56 224.2 362 38.7
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 6.0e-55 218.8 182 68.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.3e-54 216.9 150 70.0
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.2e-49 200.3 114 87.7
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.5e-40 169.1 100 83.0
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.5e-40 169.1 117 83.8
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.9e-37 160.6 119 64.7
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.0e-34 150.6 320 35.3
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.2e-26 124.8 100 62.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 5.0e-25 119.4 80 70.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 7.2e-24 115.5 121 58.7
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.1e-16 91.7 76 60.5
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 6.1e-15 85.9 90 54.4
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.3e-14 84.0 55 61.8
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 4.4e-13 79.7 70 55.7
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-12 78.2 55 74.5
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-12 77.4 48 70.8
Rhsim09G0050800 Rhododendron simsii HOM05D002504 ORTHO05D339604 1.8e-11 74.3 54 75.9
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 1.5e-08 64.7 395 20.8
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 5.2e-06 56.2 145 27.6
Peaxi162Scf00740g00427 Petunia axillaris HOM05D008044 ORTHO05D010106 5.2e-06 56.2 74 40.5


User provided reference genes

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