Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.7e-310 1068.5 550 100.0
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.3e-182 642.9 761 50.7
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 9.5e-181 637.5 841 47.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.8e-179 633.3 839 47.2
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.5e-178 630.2 798 48.1
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.1e-176 624.0 813 46.7
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 1.3e-174 617.1 841 45.8
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 8.6e-174 614.4 841 45.7
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 5.6e-173 611.7 838 45.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 7.3e-173 611.3 789 47.1
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 3.6e-172 609.0 836 45.5
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.4e-171 607.1 874 44.9
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.8e-171 606.7 840 46.1
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.8e-171 606.7 840 46.1
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.1e-171 605.9 839 45.2
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.0e-171 605.5 842 45.1
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 5.2e-171 605.1 834 45.1
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 5.2e-171 605.1 838 45.2
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.2e-170 604.0 841 45.1
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.4e-170 602.4 842 45.2
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.4e-170 602.4 843 45.1
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 3.4e-170 602.4 841 45.5
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 5.8e-170 601.7 849 44.8
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.8e-170 601.7 764 47.1
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.3e-169 600.5 835 44.9
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.9e-169 598.6 842 43.9
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 6.4e-169 598.2 833 45.0
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.1e-168 597.4 842 44.4
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.1e-168 597.4 842 44.4
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.1e-168 597.4 841 44.6
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.1e-168 597.4 838 44.4
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 2.4e-168 596.3 841 44.4
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.1e-168 594.7 829 44.6
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 1.2e-167 594.0 841 44.9
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.2e-167 594.0 839 44.5
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.6e-167 593.6 830 44.8
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.7e-167 592.8 850 44.0
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.7e-167 592.8 842 44.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.7e-167 592.8 835 44.3
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 3.5e-167 592.4 840 44.4
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.6e-167 592.0 823 45.0
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 4.6e-167 592.0 833 44.7
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.6e-167 592.0 842 43.8
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 6.0e-167 591.7 839 44.9
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 1.0e-166 590.9 834 44.1
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 1.3e-166 590.5 844 44.1
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.3e-166 590.5 841 43.9
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.7e-166 590.1 838 44.5
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.7e-166 590.1 844 44.0
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.0e-166 589.3 839 44.1
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.0e-166 589.3 842 43.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 3.9e-166 589.0 844 44.0
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.1e-166 588.6 823 44.7
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.5e-165 587.0 836 44.1
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.9e-165 586.6 838 44.3
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 2.5e-165 586.3 840 44.8
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 3.3e-165 585.9 842 44.3
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.3e-165 585.5 841 43.6
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 5.6e-165 585.1 837 43.8
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 5.6e-165 585.1 841 43.4
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 5.6e-165 585.1 842 44.3
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 7.3e-165 584.7 843 43.8
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 9.5e-165 584.3 842 44.3
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.1e-164 583.2 842 43.1
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.8e-164 582.8 834 44.1
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 8.1e-164 581.3 829 44.0
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 8.1e-164 581.3 842 43.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 8.1e-164 581.3 838 43.1
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.1e-163 580.9 840 44.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.4e-163 580.5 842 43.9
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.4e-163 580.5 845 43.7
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.1e-163 579.3 836 43.4
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.0e-163 578.9 835 43.1
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.2e-162 577.4 875 42.6
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 1.2e-162 577.4 838 43.9
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-162 577.4 891 42.4
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.0e-162 576.6 842 42.5
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.0e-162 576.6 823 44.3
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-162 576.2 829 43.9
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.4e-162 575.9 921 41.5
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 4.4e-162 575.5 834 43.8
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 4.9e-161 572.0 835 43.4
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.4e-160 570.5 859 42.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.2e-160 569.3 835 42.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 9.2e-160 567.8 864 42.7
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 1.2e-159 567.4 842 42.6
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-159 567.4 915 41.2
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.6e-159 567.0 839 42.6
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 2.7e-159 566.2 841 42.0
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 4.6e-159 565.5 835 42.2
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 6.0e-159 565.1 837 42.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.3e-158 563.1 839 41.7
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 3.9e-158 562.4 834 41.8
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 6.6e-158 561.6 870 42.2
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 8.7e-158 561.2 834 41.5
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 8.7e-158 561.2 840 42.0
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.5e-157 559.7 836 41.5
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 7.3e-157 558.1 851 41.0
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.6e-156 557.0 839 41.2
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.1e-156 556.6 836 41.1
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 4.7e-156 555.4 832 41.8
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 6.2e-156 555.1 850 40.7
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 1.4e-155 553.9 838 41.8
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 1.4e-155 553.9 838 41.8
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 1.8e-155 553.5 838 42.0
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.3e-153 547.4 838 41.4
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.4e-152 543.1 791 43.9
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 3.9e-150 535.8 845 40.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.6e-148 530.4 836 42.2
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.0e-146 523.5 832 41.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 4.9e-145 518.8 822 39.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 3.4e-138 496.1 822 40.1
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 5.8e-138 495.4 840 37.3
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 2.7e-135 486.5 793 40.9
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.3e-134 484.2 977 36.1
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 4.3e-133 479.2 847 36.4
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.0e-130 470.3 847 35.8
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 6.5e-129 465.3 1240 31.3
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 7.1e-128 461.8 662 47.6
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 7.1e-128 461.8 796 38.8
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.2e-120 436.0 825 37.0
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 7.2e-120 435.3 839 34.2
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.9e-112 410.6 758 37.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.2e-111 407.9 706 39.0
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.4e-110 404.4 685 40.3
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 1.4e-110 404.4 728 39.3
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.6e-109 400.2 723 37.9
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.0e-106 390.6 355 63.7
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 3.1e-99 366.7 865 29.9
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 4.7e-95 352.8 238 76.1
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.4e-91 340.5 272 65.4
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.0e-87 325.5 267 62.9
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 6.8e-86 322.4 239 70.3
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 4.5e-82 309.7 446 44.2
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 5.0e-81 306.2 446 43.3
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 6.8e-78 295.8 216 68.1
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.4e-69 266.5 212 68.9
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.4e-67 260.8 217 61.8
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.0e-45 188.0 197 53.3
Dinv07524 Davidia involucrata HOM05D002352 ORTHO05D003724 8.4e-44 182.6 123 76.4
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 2.4e-43 181.0 199 52.3
Lj2C285T4 Lonicera japonica HOM05D002352 ORTHO05D003724 9.2e-43 179.1 128 71.9
RhsimUnG0099400 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.5e-40 171.0 149 61.7
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 1.3e-39 168.7 177 52.0
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.8e-39 167.5 136 66.9
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 4.8e-39 166.8 248 42.3
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 1.5e-37 161.8 330 30.6
Actinidia39445 Actinidia chinensis HOM05D002352 ORTHO05D003724 3.8e-36 157.1 152 59.2
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 2.8e-31 141.0 334 32.3
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 3.1e-30 137.5 160 49.4
Ah.09g235800 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.2e-29 135.6 85 77.6
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 2.6e-29 134.4 140 57.9
Actinidia39443 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.3e-28 132.1 83 77.1
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 1.9e-24 118.2 103 60.2
Hund23686 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.1e-22 112.5 241 38.2
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 3.1e-22 110.9 106 59.4
Rhsim10G0085900 Rhododendron simsii HOM05D002352 ORTHO05D003724 6.9e-22 109.8 120 50.0
Rhsim10G0093300 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.0e-21 108.2 120 49.2
arahy.Tifrunner.gnm1.ann1.52CC3C Arachis hypogaea HOM05D002352 ORTHO05D014906 4.5e-21 107.1 107 54.2
MBI14_g43769_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.4e-19 102.1 67 70.1
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.1e-19 99.8 261 29.9
MBI01_g10024_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 3.5e-18 97.4 66 66.7
MBI12_g46554_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.3e-17 94.7 70 64.3
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 5.1e-17 93.6 104 51.9
arahy.Tifrunner.gnm1.ann1.TCII1L Arachis hypogaea HOM05D002352 ORTHO05D000332 6.7e-17 93.2 76 60.5
vmacro01392 Vaccinium macrocarpon HOM05D002352 ORTHO05D034960 3.1e-14 84.3 131 48.9
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 5.8e-13 80.1 86 53.5
arahy.Tifrunner.gnm1.ann1.KL0F8I Arachis hypogaea HOM05D002352 ORTHO05D014906 7.6e-13 79.7 101 45.5
AL8G20640 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.3e-12 79.0 104 45.2
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 2.2e-07 61.6 96 42.7


User provided reference genes

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