Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 1.2e-164 583.2 310 100.0
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 1.8e-56 223.8 312 53.5
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 8.6e-46 188.3 315 41.9
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 5.2e-43 179.1 150 66.0
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 3.4e-42 176.4 150 66.0
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 1.7e-33 147.5 150 61.3
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 2.9e-25 120.2 150 50.0
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 2.9e-25 120.2 312 38.8
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 3.0e-22 110.2 171 44.4
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 8.7e-22 108.6 163 52.8
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 5.6e-21 105.9 152 47.4
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 5.6e-21 105.9 151 50.3
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 5.6e-21 105.9 150 48.0
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 7.3e-21 105.5 153 45.1
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 1.2e-20 104.8 153 44.4
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 2.1e-20 104.0 150 49.3
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 2.1e-20 104.0 153 44.4
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 1.1e-19 101.7 150 46.7
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.4e-19 101.3 151 43.7
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 1.8e-19 100.9 152 45.4
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 2.4e-19 100.5 150 50.0
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 4.0e-19 99.8 157 43.3
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.2e-18 98.2 158 47.5
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 2.0e-18 97.4 151 45.0
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 3.4e-18 96.7 156 42.3
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 5.8e-18 95.9 150 46.0
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 9.9e-18 95.1 153 52.9
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.7e-17 94.4 152 53.3
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 2.2e-17 94.0 146 47.3
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 2.9e-17 93.6 150 46.7
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 2.9e-17 93.6 150 44.7
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.9e-17 93.6 152 52.6
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 2.9e-17 93.6 151 44.4
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 8.4e-17 92.0 151 43.7
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 1.1e-16 91.7 153 44.4
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 1.4e-16 91.3 149 51.0
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.4e-16 91.3 150 44.7
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 2.4e-16 90.5 158 39.2
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 3.2e-16 90.1 150 46.0
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 4.2e-16 89.7 145 44.1
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 5.4e-16 89.4 152 46.1
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 5.4e-16 89.4 170 37.6
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 7.1e-16 89.0 152 45.4
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 9.3e-16 88.6 159 40.3
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 1.2e-15 88.2 150 49.3
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 1.2e-15 88.2 154 41.6
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 2.1e-15 87.4 122 45.1
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 2.7e-15 87.0 151 43.7
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 2.7e-15 87.0 151 43.7
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 3.5e-15 86.7 150 40.0
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 4.6e-15 86.3 151 44.4
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 6.0e-15 85.9 152 52.0
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 6.0e-15 85.9 152 52.0
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 7.8e-15 85.5 151 41.7
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 7.8e-15 85.5 152 52.0
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 1.0e-14 85.1 152 40.8
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 1.3e-14 84.7 151 39.7
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 1.7e-14 84.3 151 42.4
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 1.7e-14 84.3 153 41.8
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 1.7e-14 84.3 73 58.9
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 1.7e-14 84.3 153 49.0
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 1.7e-14 84.3 144 43.8
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 2.3e-14 84.0 151 41.1
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 3.0e-14 83.6 154 42.2
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 3.0e-14 83.6 151 43.0
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 3.0e-14 83.6 154 42.2
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 3.0e-14 83.6 151 40.4
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 6.6e-14 82.4 151 42.4
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 6.6e-14 82.4 157 47.1
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 1.5e-13 81.3 152 46.7
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 1.5e-13 81.3 157 45.2
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 1.5e-13 81.3 150 42.0
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 1.5e-13 81.3 198 37.9
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 1.9e-13 80.9 67 61.2
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 2.5e-13 80.5 151 41.1
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 2.5e-13 80.5 151 41.1
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 2.5e-13 80.5 151 41.7
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 4.3e-13 79.7 106 48.1
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 5.6e-13 79.3 150 42.0
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 7.3e-13 79.0 162 38.9
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 7.3e-13 79.0 162 38.9
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 7.3e-13 79.0 161 37.3
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 7.3e-13 79.0 152 42.8
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 9.6e-13 78.6 108 45.4
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 9.6e-13 78.6 151 45.0
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 1.6e-12 77.8 154 38.3
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 1.6e-12 77.8 65 60.0
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 2.1e-12 77.4 154 41.6
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 2.1e-12 77.4 150 38.7
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 3.6e-12 76.6 126 50.0
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 1.1e-11 75.1 139 39.6
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 1.8e-11 74.3 153 42.5
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 3.1e-11 73.6 40 82.5
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 3.1e-11 73.6 40 82.5
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 4.0e-11 73.2 158 39.2
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 5.3e-11 72.8 158 38.6
SGA_v2.0_scaffold111G31380 Striga asiatica HOM05D006875 ORTHO05D008416 5.3e-11 72.8 154 37.0
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 1.5e-10 71.2 150 46.7
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 3.4e-10 70.1 73 54.8
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 7.6e-10 68.9 156 47.4
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 7.6e-10 68.9 40 75.0
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 3.8e-09 66.6 162 42.6
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 4.9e-09 66.2 112 42.0
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 1.1e-08 65.1 150 45.3
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 1.9e-08 64.3 150 41.3
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 2.4e-08 63.9 141 42.6
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 4.2e-08 63.2 40 70.0
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 5.4e-08 62.8 150 44.0
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 9.3e-08 62.0 40 72.5
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 6.0e-07 59.3 40 65.0
Lj7A129G17 Lonicera japonica HOM05D006875 ORTHO05D008416 7.9e-07 58.9 33 84.8
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 7.9e-07 58.9 154 42.9
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 3.0e-06 57.0 28 85.7
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 3.9e-06 56.6 40 65.0


User provided reference genes

Program Settings