Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0133900 Rhododendron simsii HOM05D001206 ORTHO05D014366 1.2e-64 249.6 122 100.0
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 5.4e-12 74.7 45 80.0
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 9.3e-12 73.9 45 77.8
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 9.3e-12 73.9 45 77.8
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 4.6e-11 71.6 45 73.3
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 6.0e-11 71.2 45 71.1
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 6.0e-11 71.2 45 71.1
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 1.3e-10 70.1 45 71.1
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 3.9e-10 68.6 45 68.9
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 5.1e-10 68.2 45 68.9
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 5.1e-10 68.2 45 68.9
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 5.1e-10 68.2 45 68.9
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 6.7e-10 67.8 45 68.9
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 6.7e-10 67.8 45 68.9
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 1.1e-09 67.0 45 64.4
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 1.9e-09 66.2 45 64.4
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 1.9e-09 66.2 45 66.7
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 2.5e-09 65.9 45 66.7
Haze_13462 Corylus avellana HOM05D001206 ORTHO05D005935 2.5e-09 65.9 45 66.7
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 2.5e-09 65.9 45 62.2
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 2.5e-09 65.9 45 64.4
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 3.3e-09 65.5 45 68.9
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 5.6e-09 64.7 45 60.0
Zm00001eb068770 Zea mays HOM05D001206 ORTHO05D005935 5.6e-09 64.7 45 64.4
FvH4_6g37630 Fragaria vesca HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
FAN06G1107 Fragaria x ananassa HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 64.4
Sed0006625 Sechium edule HOM05D001206 ORTHO05D005935 7.4e-09 64.3 45 60.0
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 9.6e-09 63.9 45 60.0
Sc21g0004390 Simmondsia chinensis HOM05D001206 ORTHO05D005935 9.6e-09 63.9 45 66.7
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 62.2
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 62.2
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.3e-08 63.5 45 57.8
Dinv06275 Davidia involucrata HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 62.2
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 62.2
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 64.4
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.3e-08 63.5 45 64.4
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 1.3e-08 63.5 42 66.7
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.6e-08 63.2 45 60.0
FAN21G1587 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.6e-08 63.2 87 43.7
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 1.6e-08 63.2 45 64.4
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 2.1e-08 62.8 45 60.0
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 2.1e-08 62.8 45 57.8
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 2.1e-08 62.8 45 66.7
Os04g0643200 Oryza sativa ssp. japonica HOM05D001206 ORTHO05D005935 2.1e-08 62.8 45 62.2
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 2.8e-08 62.4 45 60.0
CDE05G0826 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 2.8e-08 62.4 45 66.7
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 2.8e-08 62.4 45 57.8
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 2.8e-08 62.4 45 64.4
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 3.7e-08 62.0 45 53.3
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 3.7e-08 62.0 45 57.8
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 3.7e-08 62.0 45 57.8
FAN18G2655 Fragaria x ananassa HOM05D001206 ORTHO05D005935 3.7e-08 62.0 45 62.2
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 3.7e-08 62.0 45 60.0
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 60.0
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 60.0
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 60.0
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 60.0
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 57.8
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 4.8e-08 61.6 45 62.2
Rhsim08G0139700 Rhododendron simsii HOM05D001206 ORTHO05D014366 4.8e-08 61.6 42 69.0
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 6.2e-08 61.2 45 57.8
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 6.2e-08 61.2 45 60.0
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 6.2e-08 61.2 45 57.8
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 55.6
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 60.0
FvH4_4g05790 Fragaria vesca HOM05D001206 ORTHO05D005935 8.1e-08 60.8 51 56.9
FvH4_7g03390 Fragaria vesca HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 62.2
Glyma.18G104200 Glycine max HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 55.6
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 60.0
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 55.6
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 8.1e-08 60.8 45 57.8
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 57.8
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 57.8
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 60.0
FvH4_4g03380 Fragaria vesca HOM05D001206 ORTHO05D005935 1.1e-07 60.5 47 57.4
FvH4_6g33420 Fragaria vesca HOM05D001206 ORTHO05D005935 1.1e-07 60.5 47 57.4
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 57.8
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 60.0
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 60.0
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 55.6
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 55.6
PGSC0003DMG401021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 1.1e-07 60.5 45 55.6
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 1.4e-07 60.1 45 60.0
FAN25G3564 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.4e-07 60.1 45 62.2
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 57.8
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 53.3
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 1.8e-07 59.7 45 55.6
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 2.4e-07 59.3 45 55.6
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 2.4e-07 59.3 45 55.6
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 2.4e-07 59.3 45 55.6
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 3.1e-07 58.9 45 53.3
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.1e-07 58.9 45 60.0
FvH4_5g31820 Fragaria vesca HOM05D001206 ORTHO05D005935 5.3e-07 58.2 45 60.0
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 5.3e-07 58.2 45 55.6
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 6.9e-07 57.8 45 57.8
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.0e-07 57.4 43 58.1
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 1.5e-06 56.6 45 53.3
MCO11G436 Micromonas commoda HOM05D001206 ORTHO05D005935 1.5e-06 56.6 44 54.5
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 2.0e-06 56.2 45 48.9
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 2.0e-06 56.2 45 48.9
FAN26G0979 Fragaria x ananassa HOM05D001206 ORTHO05D016673 3.4e-06 55.5 40 62.5
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 3.4e-06 55.5 45 53.3
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 3.4e-06 55.5 45 53.3


User provided reference genes

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