Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0132700 Rhododendron simsii HOM05D023492 ORTHO05D023105 1.5e-138 496.1 247 100.0
Rhsim03G0253900 Rhododendron simsii HOM05D023492 ORTHO05D023105 9.2e-75 284.3 185 80.0
Rhsim04G0225900 Rhododendron simsii HOM05D023492 ORTHO05D023105 2.9e-28 129.8 68 91.2
RhsimUnG0012700 Rhododendron simsii HOM05D023492 ORTHO05D023105 1.2e-26 124.4 69 88.4
Rhsim08G0002400 Rhododendron simsii HOM05D001100 ORTHO05D001503 8.4e-20 101.7 54 94.4
vmacro18671 Vaccinium macrocarpon HOM05D001100 ORTHO05D001503 2.5e-19 100.1 54 92.6
Actinidia01386 Actinidia chinensis HOM05D001100 ORTHO05D001503 2.3e-17 93.6 54 87.0
Sabra05G0053200 Salix brachista HOM05D001100 ORTHO05D001503 3.9e-17 92.8 54 85.2
Duzib187G0114 Durio zibethinus HOM05D001100 ORTHO05D001503 5.1e-17 92.4 54 85.2
SalBow1G4172 Salvia bowleyana HOM05D001100 ORTHO05D001503 5.1e-17 92.4 54 85.2
Dinv24378 Davidia involucrata HOM05D001100 ORTHO05D001503 8.7e-17 91.7 54 87.0
MD01G1008900 Malus domestica HOM05D001100 ORTHO05D001503 8.7e-17 91.7 54 85.2
CSS0011776 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 1.1e-16 91.3 51 90.2
CSS0018704 Camellia sinensis var. sinensis HOM05D001100 ORTHO05D001503 1.1e-16 91.3 51 90.2
QL10p043423 Quercus lobata HOM05D001100 ORTHO05D001503 1.1e-16 91.3 54 87.0
Thecc.01G134000 Theobroma cacao HOM05D001100 ORTHO05D001503 1.1e-16 91.3 54 83.3
COL.COLO4_35760 Corchorus olitorius HOM05D001100 ORTHO05D001503 1.5e-16 90.9 54 83.3
Potri.005G063900 Populus trichocarpa HOM05D001100 ORTHO05D001503 1.5e-16 90.9 54 85.2
DCAR_001208 Daucus carota HOM05D001100 ORTHO05D001503 1.9e-16 90.5 54 85.2
Hma1.2p1_0539F.1_g174620 Hydrangea macrophylla HOM05D001100 ORTHO05D001503 2.5e-16 90.1 54 83.3
Potri.007G105100 Populus trichocarpa HOM05D001100 ORTHO05D001503 2.5e-16 90.1 54 81.5
Haze_25258 Corylus avellana HOM05D001100 ORTHO05D001503 3.3e-16 89.7 54 85.2
Prupe.4G272000 Prunus persica HOM05D001100 ORTHO05D001503 3.3e-16 89.7 54 81.5
TWI79G1082 Tripterygium wilfordii HOM05D001100 ORTHO05D001503 4.3e-16 89.4 54 81.5
Migut.H00694 Erythranthe guttata HOM05D001100 ORTHO05D001503 5.7e-16 89.0 54 81.5
Manes.12G156600 Manihot esculenta HOM05D001100 ORTHO05D001503 5.7e-16 89.0 53 84.9
Cfa002905 Carpinus fangiana HOM05D001100 ORTHO05D001503 9.6e-16 88.2 54 83.3
Atru.chr4.879 Acer truncatum HOM05D001100 ORTHO05D001503 1.6e-15 87.4 54 81.5
Oeu058291.1 Olea europaea HOM05D001100 ORTHO05D001503 1.6e-15 87.4 54 81.5
MSTRG.2644 Avicennia marina HOM05D001100 ORTHO05D001503 2.1e-15 87.0 53 83.0
Cpa.g.sc42.165 Carica papaya HOM05D001100 ORTHO05D001503 2.1e-15 87.0 54 79.6
Duzib264G0434 Durio zibethinus HOM05D001100 ORTHO05D001503 2.1e-15 87.0 54 81.5
Phvul.002G190600 Phaseolus vulgaris HOM05D001100 ORTHO05D001503 2.1e-15 87.0 54 77.8
TPR.G2929 Trifolium pratense HOM05D001100 ORTHO05D001503 2.1e-15 87.0 54 79.6
GSVIVG01026471001 Vitis vinifera HOM05D001100 ORTHO05D001503 2.1e-15 87.0 54 83.3
PGR119G0884 Punica granatum HOM05D001100 ORTHO05D001503 2.8e-15 86.7 54 79.6
Solyc05g056490.4 Solanum lycopersicum HOM05D001100 ORTHO05D001503 2.8e-15 86.7 54 83.3
PGSC0003DMG400023321 Solanum tuberosum HOM05D001100 ORTHO05D001503 2.8e-15 86.7 54 83.3
Sopen05g034890 Solanum pennellii HOM05D001100 ORTHO05D001503 3.7e-15 86.3 54 83.3
CiPaw.03G120600 Carya illinoinensis HOM05D001100 ORTHO05D001503 4.8e-15 85.9 54 77.8
Ca_18248_v3 Cicer arietinum L. HOM05D001100 ORTHO05D001503 4.8e-15 85.9 54 77.8
CANSAT01G0170 Cannabis sativa HOM05D001100 ORTHO05D001503 6.3e-15 85.5 54 79.6
Carub.0008s2476 Capsella rubella HOM05D001100 ORTHO05D001503 6.3e-15 85.5 56 78.6
CAN.G1156.49 Capsicum annuum HOM05D001100 ORTHO05D001503 6.3e-15 85.5 54 81.5
Nitab4.5_0000496g0090 Nicotiana tabacum HOM05D001100 ORTHO05D001503 6.3e-15 85.5 54 81.5
Aqoxy1G01118 Aquilegia oxysepala HOM05D001100 ORTHO05D001503 8.2e-15 85.1 53 77.4
Gohir.A09G004400 Gossypium hirsutum HOM05D001100 ORTHO05D001503 1.1e-14 84.7 54 77.8
Gorai.006G005300 Gossypium raimondii HOM05D001100 ORTHO05D001503 1.1e-14 84.7 54 77.8
Peaxi162Scf00525g00018 Petunia axillaris HOM05D001100 ORTHO05D001503 1.4e-14 84.3 54 81.5
Psat7g088480 Pisum sativum HOM05D001100 ORTHO05D001503 1.4e-14 84.3 54 75.9
Lj4C836T4 Lonicera japonica HOM05D001100 ORTHO05D001503 1.8e-14 84.0 53 81.1
Lj4g0016822 Lotus japonicus HOM05D001100 ORTHO05D001503 1.8e-14 84.0 54 77.8
C03p62360 Brassica napus HOM05D001100 ORTHO05D001503 2.4e-14 83.6 56 76.8
RcHm_v2.0_Chr2g0121731 Rosa chinensis HOM05D001100 ORTHO05D001503 2.4e-14 83.6 53 79.2
Eucgr.I00195 Eucalyptus grandis HOM05D001100 ORTHO05D001503 3.1e-14 83.2 53 79.2
Nn5g28512 Nelumbo nucifera HOM05D001100 ORTHO05D001503 3.1e-14 83.2 53 77.4
Oeu004238.1 Olea europaea HOM05D001100 ORTHO05D001503 4.1e-14 82.8 55 76.4
arahy.Tifrunner.gnm1.ann1.Z42PVZ Arachis hypogaea HOM05D001100 ORTHO05D001503 5.3e-14 82.4 54 74.1
Lalb_Chr07g0188391 Lupinus albus HOM05D001100 ORTHO05D001503 5.3e-14 82.4 54 74.1
A06p30600 Brassica napus HOM05D001100 ORTHO05D001503 6.9e-14 82.0 55 76.4
FAN23G1742 Fragaria x ananassa HOM05D001100 ORTHO05D001503 6.9e-14 82.0 55 78.2
Gohir.A05G256500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.9e-14 82.0 53 77.4
Gohir.A09G019900 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.9e-14 82.0 53 77.4
Gohir.D09G019500 Gossypium hirsutum HOM05D001100 ORTHO05D001503 6.9e-14 82.0 53 77.4
Gorai.006G022900 Gossypium raimondii HOM05D001100 ORTHO05D001503 6.9e-14 82.0 53 77.4
VMungo0251G2364 Vigna mungo HOM05D001100 ORTHO05D001503 6.9e-14 82.0 54 74.1
SGA_v2.0_scaffold370G50110 Striga asiatica HOM05D001100 ORTHO05D001503 9.0e-14 81.6 54 77.8
FAN19G1763 Fragaria x ananassa HOM05D001100 ORTHO05D001503 1.2e-13 81.3 55 80.0
TAR381G0336 Trochodendron aralioides HOM05D001100 ORTHO05D001503 1.2e-13 81.3 53 77.4
arahy.Tifrunner.gnm1.ann1.LZ18QW Arachis hypogaea HOM05D001100 ORTHO05D001503 1.5e-13 80.9 54 72.2
unitig_899.g14679 Utricularia gibba HOM05D001100 ORTHO05D001503 2.0e-13 80.5 54 75.9
Ciclev10001463m.g Citrus clementina HOM05D001100 ORTHO05D001503 2.6e-13 80.1 54 75.9
FAN28G0182 Fragaria x ananassa HOM05D001100 ORTHO05D001503 2.6e-13 80.1 55 78.2
Glyma.05G132200 Glycine max HOM05D001100 ORTHO05D001503 2.6e-13 80.1 54 72.2
FvH4_1g24470 Fragaria vesca HOM05D001100 ORTHO05D001503 4.5e-13 79.3 55 78.2
Gohir.A04G103566 Gossypium hirsutum HOM05D001100 ORTHO05D001503 4.5e-13 79.3 51 76.5
Sc07g0001800 Simmondsia chinensis HOM05D001100 ORTHO05D001503 5.9e-13 79.0 54 70.4
HanXRQChr09g0259741 Helianthus annuus HOM05D001100 ORTHO05D001503 1.3e-12 77.8 50 78.0
Lsat_1_v5_gn_4_137741 Lactuca sativa HOM05D001100 ORTHO05D001503 1.3e-12 77.8 51 76.5
SHI11463 Sapria himalayana HOM05D001100 ORTHO05D023105 1.3e-12 77.8 59 62.7
CDE04G3754 Ceratophyllum demersum HOM05D001100 ORTHO05D001503 2.9e-12 76.6 53 71.7
Cc07_g18630 Coffea canephora HOM05D001100 ORTHO05D001503 5.0e-12 75.9 54 74.1
RhsimUnG0201600 Rhododendron simsii HOM05D023492 ORTHO05D000673 6.5e-12 75.5 136 42.6
Zm00001eb409080 Zea mays HOM05D001100 ORTHO05D001503 1.1e-11 74.7 56 69.6
Glyma.08G086800 Glycine max HOM05D001100 ORTHO05D001503 1.4e-11 74.3 54 66.7
ClCG01G015360 Citrullus lanatus HOM05D001100 ORTHO05D001503 1.9e-11 73.9 53 71.7
Nitab4.5_0006981g0010 Nicotiana tabacum HOM05D001100 ORTHO05D001503 1.9e-11 73.9 50 76.0
ATR0584G033 Amborella trichopoda HOM05D001100 ORTHO05D001503 2.5e-11 73.6 53 67.9
Sed0005361 Sechium edule HOM05D001100 ORTHO05D001503 3.2e-11 73.2 53 69.8
Os12g0183300 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 4.2e-11 72.8 50 70.0
Aa31LG1G17920 Aethionema arabicum HOM05D001100 ORTHO05D001503 9.3e-11 71.6 51 66.7
THA.LOC104818427 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 9.3e-11 71.6 50 70.0
CARHR204120 Cardamine hirsuta HOM05D001100 ORTHO05D001503 2.1e-10 70.5 50 68.0
AL6G19680 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 3.5e-10 69.7 50 66.0
BcaB07g29712 Brassica carinata HOM05D001100 ORTHO05D001503 4.6e-10 69.3 50 68.0
BcaB07g29714 Brassica carinata HOM05D001100 ORTHO05D001503 4.6e-10 69.3 50 68.0
BcaC03g18236 Brassica carinata HOM05D001100 ORTHO05D001503 4.6e-10 69.3 50 68.0
C02p63070 Brassica napus HOM05D001100 ORTHO05D001503 4.6e-10 69.3 50 68.0
BolC2t12380H Brassica oleracea HOM05D001100 ORTHO05D001503 4.6e-10 69.3 50 68.0
MBI06_g27446_MAGBIO Magnolia biondii HOM05D001100 ORTHO05D001503 4.6e-10 69.3 53 64.2
Carub.0008s2477 Capsella rubella HOM05D001100 ORTHO05D001503 6.1e-10 68.9 61 60.7
Carub.0006s0784 Capsella rubella HOM05D001100 ORTHO05D001503 7.9e-10 68.6 50 66.0
A02p43100 Brassica napus HOM05D001100 ORTHO05D001503 1.0e-09 68.2 50 68.0
AT5G09290 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 1.3e-09 67.8 50 64.0
A06p30610 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-09 67.8 61 62.3
A09p08500 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-09 67.8 56 64.3
C03p62350 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-09 67.8 61 62.3
C09p09630 Brassica napus HOM05D001100 ORTHO05D001503 1.3e-09 67.8 56 64.3
BolC9t53874H Brassica oleracea HOM05D001100 ORTHO05D001503 1.3e-09 67.8 56 64.3
BraA09t36499Z Brassica rapa HOM05D001100 ORTHO05D001503 1.3e-09 67.8 56 64.3
BcaC01g02653 Brassica carinata HOM05D001100 ORTHO05D001503 3.9e-09 66.2 50 66.0
C03p62340 Brassica napus HOM05D001100 ORTHO05D001503 3.9e-09 66.2 50 66.0
BolC3t18496H Brassica oleracea HOM05D001100 ORTHO05D001503 3.9e-09 66.2 50 66.0
Rhsim03G0253800 Rhododendron simsii HOM05D000866 ORTHO05D000673 3.9e-09 66.2 52 69.2
Rhsim10G0134700 Rhododendron simsii HOM05D001100 ORTHO05D001318 3.9e-09 66.2 46 78.3
SHI31582 Sapria himalayana HOM05D000105 ORTHO05D000023 6.7e-09 65.5 49 61.2
THA.LOC104819342 Tarenaya hassleriana HOM05D001100 ORTHO05D001503 6.7e-09 65.5 49 67.3
Os12g0183200 Oryza sativa ssp. japonica HOM05D001100 ORTHO05D001503 8.7e-09 65.1 50 62.0
Carub.0008s2478 Capsella rubella HOM05D001100 ORTHO05D001503 1.1e-08 64.7 50 66.0
Mapoly0030s0063 Marchantia polymorpha HOM05D001100 ORTHO05D001503 1.5e-08 64.3 55 58.2
Pp3c15_5590 Physcomitrium patens HOM05D001100 ORTHO05D001503 1.5e-08 64.3 49 61.2
AL8G41260 Arabidopsis lyrata HOM05D001100 ORTHO05D001503 1.9e-08 63.9 50 66.0
AT5G64000 Arabidopsis thaliana HOM05D001100 ORTHO05D001503 1.9e-08 63.9 50 66.0
AagrBONN_evm.TU.Sc2ySwM_117.3377 Anthoceros agrestis HOM05D001100 ORTHO05D001503 3.3e-08 63.2 55 58.2
A06p30620 Brassica napus HOM05D001100 ORTHO05D001503 3.3e-08 63.2 50 64.0
BraA06t26012Z Brassica rapa HOM05D001100 ORTHO05D001503 3.3e-08 63.2 50 64.0
Thhalv10004505m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 4.3e-08 62.8 50 64.0
Sp2g27070 Schrenkiella parvula HOM05D001100 ORTHO05D001503 4.3e-08 62.8 50 64.0
Thhalv10013884m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 7.4e-08 62.0 50 60.0
Actinidia24743 Actinidia chinensis HOM05D000866 ORTHO05D000673 9.7e-08 61.6 42 76.2
CSS0032401 Camellia sinensis var. sinensis HOM05D000866 ORTHO05D000673 9.7e-08 61.6 70 57.1
CARHR277920 Cardamine hirsuta HOM05D001100 ORTHO05D001503 9.7e-08 61.6 50 64.0
Rhsim12G0200000 Rhododendron simsii HOM05D000866 ORTHO05D000673 9.7e-08 61.6 46 76.1
TAR625G0855 Trochodendron aralioides HOM05D001100 ORTHO05D001503 9.7e-08 61.6 40 77.5
SHI33332 Sapria himalayana HOM05D001100 ORTHO05D001503 1.3e-07 61.2 49 59.2
Lj9A509T90 Lonicera japonica HOM05D000866 ORTHO05D000673 2.2e-07 60.5 52 65.4
vmacro16968 Vaccinium macrocarpon HOM05D000866 ORTHO05D000673 2.2e-07 60.5 36 86.1
Lalb_Chr14g0373251 Lupinus albus HOM05D000866 ORTHO05D000673 2.8e-07 60.1 75 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4235 Anthoceros agrestis HOM05D001100 ORTHO05D001503 3.7e-07 59.7 44 65.9
SHI30977 Sapria himalayana HOM05D001100 ORTHO05D001503 3.7e-07 59.7 53 52.8
Sp2g27060 Schrenkiella parvula HOM05D001100 ORTHO05D001503 3.7e-07 59.7 61 55.7
Thhalv10004421m.g Eutrema salsugineum HOM05D001100 ORTHO05D001503 4.8e-07 59.3 50 60.0
SHI33253 Sapria himalayana HOM05D000024 ORTHO05D023105 4.8e-07 59.3 49 55.1
Migut.I00945 Erythranthe guttata HOM05D000866 ORTHO05D000673 8.2e-07 58.5 66 53.0
Dinv38027 Davidia involucrata HOM05D000866 ORTHO05D000673 1.1e-06 58.2 66 51.5
Solyc12g044250.2 Solanum lycopersicum HOM05D000866 ORTHO05D000673 1.4e-06 57.8 67 55.2
Nitab4.5_0001968g0060 Nicotiana tabacum HOM05D000866 ORTHO05D000673 1.8e-06 57.4 61 60.7
Peaxi162Scf00034g00052 Petunia axillaris HOM05D000866 ORTHO05D000673 1.8e-06 57.4 42 69.0
Sopen12g022490 Solanum pennellii HOM05D000866 ORTHO05D000673 1.8e-06 57.4 67 55.2
PGSC0003DMG400007573 Solanum tuberosum HOM05D000866 ORTHO05D000673 1.8e-06 57.4 67 55.2
CAN.G144.9 Capsicum annuum HOM05D000866 ORTHO05D000673 2.4e-06 57.0 42 69.0
Cc04_g03090 Coffea canephora HOM05D000866 ORTHO05D000673 2.4e-06 57.0 52 63.5
GSVIVG01017067001 Vitis vinifera HOM05D000866 ORTHO05D000673 2.4e-06 57.0 66 53.0
MSTRG.22666 Avicennia marina HOM05D000866 ORTHO05D000673 3.1e-06 56.6 66 51.5
PSO063G2240 Papaver somniferum HOM05D000866 ORTHO05D000673 3.1e-06 56.6 66 51.5
MBI01_g07174_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 4.1e-06 56.2 42 69.0
Prupe.3G067700 Prunus persica HOM05D000866 ORTHO05D000673 4.1e-06 56.2 66 51.5
Oeu029640.1 Olea europaea HOM05D000866 ORTHO05D000673 5.3e-06 55.8 50 64.0
SalBow2G2243 Salvia bowleyana HOM05D000866 ORTHO05D000673 5.3e-06 55.8 36 77.8
CDE02G1928 Ceratophyllum demersum HOM05D000866 ORTHO05D000673 6.9e-06 55.5 50 60.0
FvH4_6g31721 Fragaria vesca HOM05D000866 ORTHO05D000673 6.9e-06 55.5 66 47.0
FAN02G1042 Fragaria x ananassa HOM05D000866 ORTHO05D000673 6.9e-06 55.5 66 47.0
TAR383G1100 Trochodendron aralioides HOM05D000866 ORTHO05D000673 6.9e-06 55.5 76 48.7
FAN14G0273 Fragaria x ananassa HOM05D000866 ORTHO05D000673 9.0e-06 55.1 40 62.5
MBI04_g19170_MAGBIO Magnolia biondii HOM05D000866 ORTHO05D000673 9.0e-06 55.1 122 38.5
SalBow1G7013 Salvia bowleyana HOM05D000866 ORTHO05D000673 9.0e-06 55.1 66 51.5
SalBow2G0922 Salvia bowleyana HOM05D000866 ORTHO05D000673 9.0e-06 55.1 66 51.5


User provided reference genes

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