Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.0e-53 212.2 110 100.0
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.2e-42 176.4 110 87.3
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 7.8e-42 173.7 110 81.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.9e-40 169.1 108 84.3
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 6.2e-39 164.1 106 81.1
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 1.5e-37 159.5 92 91.3
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 3.5e-34 148.3 90 85.6
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 2.3e-33 145.6 110 71.8
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 9.5e-32 140.2 94 83.0
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 4.7e-31 137.9 103 70.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 1.4e-30 136.3 105 67.6
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 3.1e-30 135.2 111 66.7
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 8.9e-30 133.7 111 65.8
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 8.9e-30 133.7 111 65.8
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 1.5e-29 132.9 101 68.3
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 2.0e-29 132.5 111 66.7
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.0e-29 132.5 111 66.7
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.0e-29 132.5 111 66.7
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 5.8e-29 131.0 111 66.7
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 7.5e-29 130.6 90 78.9
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 9.9e-29 130.2 105 67.6
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.3e-28 129.8 111 64.9
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 1.3e-28 129.8 102 69.6
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 2.2e-28 129.0 103 68.0
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.9e-28 128.6 107 64.5
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 2.9e-28 128.6 91 76.9
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 3.7e-28 128.3 91 75.8
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.9e-28 127.9 111 64.9
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.9e-28 127.9 111 64.9
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 4.9e-28 127.9 91 75.8
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 6.4e-28 127.5 104 67.3
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.4e-27 126.3 111 64.0
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 5.4e-27 124.4 111 63.1
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 2.1e-26 122.5 109 60.6
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 2.1e-26 122.5 109 62.4
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 3.5e-26 121.7 101 65.3
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 4.6e-26 121.3 105 60.0
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 7.8e-26 120.6 87 74.7
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 1.7e-25 119.4 109 59.6
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 3.0e-25 118.6 107 60.7
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 3.9e-25 118.2 84 73.8
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 8.6e-25 117.1 82 76.8
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 8.6e-25 117.1 110 59.1
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 1.1e-24 116.7 93 64.5
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.9e-24 115.9 79 68.4
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 1.9e-24 115.9 107 59.8
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 3.3e-24 115.2 86 65.1
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 7.3e-24 114.0 101 59.4
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 9.5e-24 113.6 112 57.1
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.2e-23 113.2 98 58.2
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 2.8e-23 112.1 89 61.8
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 3.6e-23 111.7 86 70.9
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 4.7e-23 111.3 108 57.4
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 1.8e-22 109.4 85 64.7
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 5.2e-22 107.8 100 59.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 5.2e-22 107.8 85 65.9
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 8.9e-22 107.1 87 65.5
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 8.9e-22 107.1 111 57.7
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 1.2e-21 106.7 117 54.7
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 1.5e-21 106.3 91 63.7
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.5e-21 106.3 102 53.9
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 2.0e-21 105.9 94 57.4
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 2.6e-21 105.5 85 64.7
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 3.4e-21 105.1 91 62.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 3.4e-21 105.1 91 62.6
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 3.4e-21 105.1 86 65.1
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 5.8e-21 104.4 99 59.6
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 7.6e-21 104.0 85 64.7
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 7.6e-21 104.0 85 63.5
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 9.9e-21 103.6 85 64.7
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 9.9e-21 103.6 85 60.0
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 2.2e-20 102.4 110 50.9
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.9e-20 102.1 97 62.9
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 4.9e-20 101.3 119 52.9
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 6.4e-20 100.9 68 69.1
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 1.1e-19 100.1 110 50.0
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 1.9e-19 99.4 85 60.0
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 1.9e-19 99.4 85 62.4
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 3.2e-19 98.6 101 57.4
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 1.2e-18 96.7 79 58.2
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 1.6e-18 96.3 75 65.3
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 7.8e-18 94.0 90 55.6
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 7.8e-18 94.0 90 55.6
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 7.8e-18 94.0 104 50.0
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 1.3e-17 93.2 122 45.1
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.1e-16 90.1 71 66.2
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 4.3e-16 88.2 95 52.6
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.6e-15 86.3 103 52.4
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 1.6e-15 86.3 107 49.5
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 2.1e-15 85.9 90 55.6
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 2.1e-15 85.9 60 70.0
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 2.1e-15 85.9 87 55.2
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 2.1e-15 85.9 56 71.4
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 4.7e-15 84.7 107 48.6
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 6.9e-14 80.9 81 55.6
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 1.2e-13 80.1 110 43.6
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 1.9e-11 72.8 52 61.5
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.9e-11 72.8 91 45.1
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 5.4e-11 71.2 83 53.0
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.7e-10 68.9 50 66.0
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.1e-06 57.0 37 67.6


User provided reference genes

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