Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.7e-261 904.4 490 100.0
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.5e-129 467.2 458 64.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.4e-121 439.1 537 53.3
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.6e-116 422.2 532 53.0
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.4e-114 417.5 533 54.0
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.0e-114 416.0 533 53.8
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 2.3e-109 400.2 563 49.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-108 397.1 491 52.3
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.2e-107 394.4 425 56.2
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 3.4e-105 386.3 519 49.7
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 4.2e-103 379.4 430 54.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.7e-102 376.7 550 46.2
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 1.9e-95 354.0 429 52.7
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.2e-94 351.3 489 48.3
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.0e-93 348.2 346 59.0
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.3e-93 347.8 359 56.0
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-92 344.7 481 50.3
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.1e-92 344.7 380 55.8
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 2.5e-92 343.6 382 53.9
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 5.6e-92 342.4 454 48.0
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.3e-91 341.3 538 45.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 1.6e-91 340.9 527 43.3
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 8.1e-91 338.6 350 55.4
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 3.1e-90 336.7 404 52.0
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 9.0e-90 335.1 529 44.2
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 7.6e-89 332.0 391 51.2
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 9.9e-89 331.6 505 45.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 3.8e-88 329.7 394 52.0
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 8.4e-88 328.6 332 56.9
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.4e-87 327.8 455 47.5
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.9e-87 327.4 327 57.5
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 2.4e-87 327.0 452 47.8
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 2.4e-87 327.0 393 51.1
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 3.2e-87 326.6 389 51.4
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 3.2e-87 326.6 379 52.2
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.7e-86 323.6 351 54.4
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.7e-86 323.6 361 54.3
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 4.6e-86 322.8 327 57.2
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 6.0e-86 322.4 391 51.2
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 7.9e-86 322.0 370 54.9
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.0e-85 321.6 327 56.9
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 3.0e-85 320.1 407 50.1
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.3e-83 314.7 393 49.9
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.3e-83 314.7 454 45.2
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 3.7e-83 313.2 364 51.9
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 4.8e-83 312.8 499 43.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 1.1e-82 311.6 505 46.1
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.4e-82 311.2 285 61.8
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.8e-82 310.8 383 51.2
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 2.4e-82 310.5 428 47.2
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.4e-82 310.5 428 47.2
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.4e-82 310.5 474 44.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.1e-82 310.1 428 47.4
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 4.0e-82 309.7 428 47.0
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.5e-81 307.8 529 42.2
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 3.4e-81 306.6 351 52.7
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 4.5e-81 306.2 444 46.4
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.0e-80 305.1 375 51.2
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.0e-80 305.1 375 51.2
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.3e-80 304.7 428 46.5
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.7e-80 304.3 333 55.6
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.2e-80 303.9 346 53.2
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.2e-80 303.9 532 41.9
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 6.5e-80 302.4 500 42.2
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 6.5e-80 302.4 416 47.4
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 8.4e-80 302.0 330 55.5
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.1e-79 301.6 407 48.9
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.5e-79 299.3 485 43.5
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 5.5e-79 299.3 489 43.8
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 7.1e-79 298.9 369 51.5
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 9.3e-79 298.5 435 45.5
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 2.1e-78 297.4 375 51.2
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 2.7e-78 297.0 377 49.1
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 3.5e-78 296.6 500 43.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 6.0e-78 295.8 408 50.5
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 3.0e-77 293.5 371 51.2
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 3.9e-77 293.1 319 54.2
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 1.9e-76 290.8 349 52.4
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 1.9e-76 290.8 370 52.2
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.5e-76 290.4 396 47.2
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 3.3e-76 290.0 344 52.6
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 3.3e-76 290.0 364 51.1
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 7.4e-76 288.9 335 51.3
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 1.3e-75 288.1 317 53.6
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 1.6e-75 287.7 398 48.2
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 8.2e-75 285.4 375 49.3
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.1e-74 285.0 308 57.1
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.8e-74 284.3 243 64.6
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.8e-74 284.3 384 47.9
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.5e-73 281.2 340 49.4
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.5e-73 281.2 322 53.1
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 2.0e-73 280.8 397 47.4
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 5.9e-73 279.3 332 52.1
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 5.9e-73 279.3 330 51.5
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 7.6e-73 278.9 392 47.7
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.7e-72 277.7 403 46.4
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 2.2e-72 277.3 415 45.1
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.9e-72 276.9 328 51.2
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.9e-72 276.9 407 44.7
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 3.8e-72 276.6 382 47.9
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.0e-72 276.2 386 44.6
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.5e-72 275.8 330 51.2
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 8.4e-72 275.4 330 51.2
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 8.4e-72 275.4 330 51.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 2.5e-71 273.9 317 53.0
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 3.2e-71 273.5 379 46.2
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 4.6e-70 269.6 280 56.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.0e-69 268.5 316 52.8
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 4.3e-68 263.1 229 62.0
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 9.7e-68 261.9 363 45.7
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.6e-65 253.8 367 44.1
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-55 221.9 140 79.3
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.7e-52 209.5 133 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 3.1e-42 177.2 290 39.0
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.7e-40 171.4 286 38.8
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 5.0e-40 169.9 109 78.9
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 3.0e-37 160.6 260 40.8
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.0e-36 157.9 402 32.6
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 3.7e-35 153.7 208 44.2
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-31 140.6 193 44.6
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 9.5e-31 139.0 230 41.7
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.4e-26 123.2 277 35.0
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 6.6e-24 116.3 233 36.5
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 2.5e-23 114.4 144 47.9
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 3.0e-21 107.5 103 55.3
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 3.0e-21 107.5 103 55.3
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 5.2e-21 106.7 199 38.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 5.2e-21 106.7 199 38.2
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 4.9e-19 100.1 199 37.2
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 4.1e-18 97.1 201 37.8
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 4.1e-18 97.1 131 45.8
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.6e-14 85.1 65 64.6
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.9e-07 61.6 129 44.2
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 1.9e-07 61.6 171 36.8
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 2.5e-07 61.2 158 31.6
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 7.3e-07 59.7 254 28.0


User provided reference genes

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