Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 2362.4 1190 100.0
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 2041.2 1172 89.6
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 0.0e+00 2011.5 1198 86.6
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 0.0e+00 1590.1 1197 72.4
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 0.0e+00 1386.3 1176 66.3
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 2.1e-233 813.5 1168 48.2
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 3.8e-227 792.7 1002 50.9
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 3.8e-227 792.7 1002 50.9
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.8e-203 713.0 1279 41.2
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.5e-194 683.7 1194 42.8
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.8e-151 539.7 1021 40.5
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 2.3e-139 501.1 1331 35.8
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 5.2e-107 393.7 1210 32.9
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 5.5e-101 373.6 1269 31.0
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.7e-97 362.1 1270 30.8
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 5.2e-91 340.5 1249 30.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 3.3e-85 321.2 1233 30.1
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 1.1e-80 306.2 1256 29.0
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 2.3e-78 298.5 1205 29.4
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 5.8e-74 283.9 1237 29.4
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.4e-72 277.3 1236 28.2
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 9.2e-72 276.6 1205 30.0
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 9.2e-72 276.6 1201 28.6
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.2e-71 276.2 1534 27.5
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.6e-71 274.2 1535 26.4
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 6.0e-71 273.9 1199 29.4
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 1.7e-70 272.3 1249 27.9
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 3.0e-70 271.6 1304 28.1
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.5e-69 268.5 1156 29.4
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.6e-68 265.8 1529 27.2
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 6.8e-67 260.4 1258 28.7
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.8e-66 257.3 1220 28.6
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 9.9e-66 256.5 370 45.9
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 2.9e-65 255.0 1257 28.0
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 6.4e-65 253.8 1323 26.6
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 6.4e-65 253.8 1119 29.1
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.1e-64 253.1 1170 28.1
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.4e-64 252.7 1222 28.2
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.4e-64 252.7 1391 25.9
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.4e-64 251.9 1225 28.5
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.1e-64 251.1 1214 28.6
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-63 249.6 1229 28.8
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.6e-63 249.2 1216 28.9
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 1.3e-62 246.1 1195 28.7
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.3e-62 246.1 1207 28.3
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.7e-62 245.7 1515 27.2
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 2.3e-62 245.4 1149 28.9
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 3.9e-62 244.6 1234 28.8
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 5.1e-62 244.2 1271 26.9
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 1.9e-61 242.3 1281 27.8
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.8e-59 235.7 1142 28.4
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 1.8e-59 235.7 608 35.0
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.5e-58 232.6 1125 27.7
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 2.0e-58 232.3 1100 28.5
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 2.0e-58 232.3 1100 28.5
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 1.3e-57 229.6 1084 29.3
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 1.4e-56 226.1 1135 28.6
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.9e-56 225.7 1144 28.3
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.2e-55 223.0 1340 27.0
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.6e-55 222.6 1135 28.5
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 4.6e-55 221.1 506 36.0
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 2.5e-53 215.3 1369 26.2
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 4.3e-53 214.5 1363 26.9
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 5.6e-53 214.2 1075 28.6
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.8e-51 209.1 1229 26.9
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 3.1e-51 208.4 1227 27.4
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 2.9e-49 201.8 1231 27.8
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.4e-48 198.7 1506 25.0
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.0e-46 193.4 1256 25.1
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 5.1e-46 191.0 1411 24.2
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 2.1e-44 185.7 228 46.5
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 6.0e-39 167.5 716 28.6
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.9e-39 167.2 714 27.7
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.5e-37 162.9 1463 24.2
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 3.3e-37 161.8 1300 25.0
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 9.0e-35 153.7 1232 25.7
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 5.8e-34 151.0 1120 27.5
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.3e-33 149.8 1397 23.2
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 6.5e-33 147.5 1230 24.1
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.2e-31 143.3 1112 24.5
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.7e-31 142.1 1263 23.4
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.0e-30 138.7 1360 23.9
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 8.7e-30 137.1 1241 25.2
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.9e-29 136.0 1479 23.1
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.4e-27 129.8 1184 25.2
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.0e-25 123.6 1186 24.7
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 1.7e-25 122.9 1215 23.9
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 8.4e-25 120.6 1280 24.5
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 1.1e-24 120.2 1328 23.6
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.1e-23 115.9 1183 23.2
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 7.9e-23 114.0 1188 23.3
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.5e-21 109.8 1114 24.8
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 1.2e-18 100.1 290 30.3
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 4.5e-18 98.2 739 26.3
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 1.7e-17 96.3 578 26.6
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.7e-17 96.3 903 22.8
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.8e-17 95.1 493 27.6
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 7.2e-16 90.9 1100 23.4
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 1.0e-14 87.0 1026 24.1
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 3.0e-14 85.5 166 40.4
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 3.0e-14 85.5 1186 23.5
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 3.9e-14 85.1 392 27.3
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 1.1e-11 77.0 1154 25.5
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.1e-11 77.0 389 26.2
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.8e-11 76.3 347 26.8
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 6.9e-11 74.3 297 28.6
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 2.6e-10 72.4 363 24.0
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 2.6e-10 72.4 363 24.0
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 3.4e-10 72.0 235 32.3
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 5.9e-10 71.2 200 34.5
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.7e-09 69.7 355 26.5
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 1.7e-09 69.7 591 25.0
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.2e-09 69.3 364 27.5
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 2.2e-09 69.3 1117 22.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 5.0e-09 68.2 335 31.6
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 5.0e-09 68.2 355 25.6
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 5.0e-09 68.2 355 25.6
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 5.0e-09 68.2 241 32.0
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 8.5e-09 67.4 348 26.7
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 8.5e-09 67.4 336 29.2
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 1.1e-08 67.0 355 25.4
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 3.2e-08 65.5 363 28.1
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 5.5e-08 64.7 370 25.9
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.6e-07 63.2 1003 22.5
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.1e-07 62.8 328 28.0
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 4.7e-07 61.6 294 28.6
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 4.7e-07 61.6 357 24.6
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 4.7e-07 61.6 316 28.5
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 6.1e-07 61.2 301 27.6
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 3.0e-06 58.9 311 28.6
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 3.9e-06 58.5 298 28.2
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 3.9e-06 58.5 298 28.2
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 3.9e-06 58.5 332 28.6


User provided reference genes

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