Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 4.0e-284 980.7 483 100.0
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 4.8e-253 877.5 483 89.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 1.1e-249 866.3 483 88.2
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 3.0e-247 858.2 483 87.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 4.8e-245 850.9 483 86.3
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 7.4e-238 827.0 483 83.9
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 8.2e-237 823.5 483 83.4
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 6.9e-236 820.5 483 82.6
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 1.5e-235 819.3 483 82.6
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 2.6e-235 818.5 483 82.8
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 3.4e-235 818.1 483 83.6
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 3.8e-234 814.7 482 82.4
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 8.5e-234 813.5 483 82.8
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.4e-233 812.8 483 83.2
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.2e-233 811.6 483 83.2
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 83.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 83.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 82.8
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 7.2e-233 810.4 483 83.2
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.6e-232 809.3 483 81.4
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 6.1e-232 807.4 483 82.8
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 8.0e-232 807.0 482 82.4
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 8.0e-232 807.0 484 82.6
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 3.0e-231 805.1 483 81.4
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 3.9e-231 804.7 483 82.2
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 3.9e-231 804.7 483 82.6
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 5.2e-231 804.3 485 83.1
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.1e-230 803.1 484 82.4
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 1.1e-230 803.1 483 82.6
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 1.1e-230 803.1 483 82.2
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 81.8
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 5.7e-230 800.8 483 81.8
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 7.4e-230 800.4 485 81.9
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 7.4e-230 800.4 484 82.4
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 9.7e-230 800.0 484 80.4
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 1.3e-229 799.7 483 82.0
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 1.3e-229 799.7 484 81.2
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.3e-229 799.7 483 82.4
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 2.8e-229 798.5 484 82.4
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 3.7e-229 798.1 482 82.6
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 81.2
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 6.3e-229 797.3 484 80.6
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 6.3e-229 797.3 483 81.8
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.1e-228 796.6 483 82.2
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.4e-228 796.2 483 80.7
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.8e-228 795.8 484 82.0
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 3.1e-228 795.0 483 80.1
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.1e-228 794.7 482 80.7
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 9.1e-228 793.5 483 81.4
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 5.9e-227 790.8 483 81.6
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.2e-226 788.9 483 81.0
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 5.0e-226 787.7 489 80.2
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 8.5e-226 786.9 489 80.0
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.5e-225 785.4 485 80.2
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 2.1e-224 782.3 483 79.9
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 3.6e-224 781.6 486 81.1
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.6e-224 781.6 483 79.9
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 6.1e-224 780.8 483 79.9
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.4e-223 779.6 465 82.6
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 8.8e-223 776.9 483 79.7
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 8.8e-223 776.9 514 76.3
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.5e-222 776.2 483 80.3
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.4e-220 769.6 483 79.1
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.4e-220 769.6 485 79.6
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 4.1e-220 768.1 417 88.2
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.3e-220 767.7 487 78.6
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 2.0e-219 765.8 483 78.9
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 4.5e-219 764.6 482 79.9
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.7e-219 763.8 487 78.4
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 5.5e-217 757.7 485 77.5
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 5.5e-217 757.7 484 78.1
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 7.2e-217 757.3 481 78.2
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.6e-216 756.1 489 77.7
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 4.7e-216 754.6 485 76.7
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 1.0e-215 753.4 485 76.7
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.4e-215 753.1 483 77.0
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.8e-215 752.7 483 76.8
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 1.8e-215 752.7 485 77.3
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.8e-215 752.7 482 79.0
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.3e-215 752.3 481 76.7
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 8.8e-215 750.4 483 77.2
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 5.7e-214 747.7 485 76.3
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 5.7e-214 747.7 486 77.4
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 4.8e-213 744.6 488 77.0
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 4.8e-213 744.6 488 77.0
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 9.1e-212 740.3 484 76.2
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.0e-210 736.9 393 89.3
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 1.0e-210 736.9 484 77.1
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 1.7e-210 736.1 484 76.7
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 2.9e-210 735.3 394 89.3
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 2.9e-210 735.3 394 88.8
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 5.0e-210 734.6 396 88.4
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 6.5e-210 734.2 396 88.4
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 8.6e-210 733.8 393 88.8
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 4.2e-209 731.5 489 75.3
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 5.5e-209 731.1 487 76.2
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 7.2e-209 730.7 483 74.5
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 6.8e-207 724.2 393 87.5
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.5e-198 696.4 443 77.4
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 2.4e-196 689.1 448 77.5
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 2.0e-195 686.0 436 75.9
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 2.0e-195 686.0 406 78.3
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 2.1e-192 676.0 394 83.5
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.1e-191 673.7 422 75.8
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.2e-189 666.0 389 80.2
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 1.9e-188 662.9 400 77.8
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 4.6e-187 658.3 383 83.8
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 2.4e-175 619.4 406 72.2
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.0e-170 604.0 431 71.5
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 5.6e-169 598.2 487 65.9
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 4.9e-165 585.1 392 67.6
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 3.2e-164 582.4 389 67.9
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 9.3e-156 554.3 289 92.4
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 2.1e-155 553.1 289 92.4
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 4.6e-139 498.8 342 72.5
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 6.5e-133 478.4 294 77.9
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 2.0e-102 377.1 271 70.5
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.9e-102 375.6 237 76.8
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.1e-79 301.6 172 83.7
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 7.3e-60 235.7 196 60.7
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.1e-59 234.2 135 84.4
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 4.0e-58 229.9 130 83.1
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 9.9e-57 225.3 139 77.7
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.8e-48 196.8 140 73.6
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 1.1e-42 178.7 158 61.4
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 2.1e-35 154.5 94 81.9
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 1.2e-30 138.7 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 2.0e-12 78.2 59 62.7
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 2.5e-07 61.2 134 29.9
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 2.5e-07 61.2 127 32.3
Pp3c3_1820 Physcomitrium patens HOM05D000776 ORTHO05D001624 4.2e-07 60.5 179 26.8
CAN.G390.7 Capsicum annuum HOM05D000776 ORTHO05D001624 7.2e-07 59.7 151 29.8
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 7.2e-07 59.7 125 31.2
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 9.4e-07 59.3 155 27.1
Oeu029778.1 Olea europaea HOM05D000776 ORTHO05D001624 9.4e-07 59.3 161 27.3
Nn2g15146 Nelumbo nucifera HOM05D000776 ORTHO05D001624 2.1e-06 58.2 127 29.9
Lj2A166T58 Lonicera japonica HOM05D000776 ORTHO05D001624 3.6e-06 57.4 127 30.7
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 3.6e-06 57.4 157 26.1
Migut.E01129 Erythranthe guttata HOM05D000776 ORTHO05D001624 4.7e-06 57.0 157 26.1
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.7e-06 57.0 129 28.7
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 4.7e-06 57.0 161 26.7


User provided reference genes

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