Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.7e-132 474.6 243 100.0
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.1e-86 321.6 241 67.6
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 3.3e-85 318.9 243 67.1
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.8e-84 315.8 243 66.7
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.1e-80 303.9 243 65.0
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.6e-79 300.1 274 60.6
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.9e-72 276.6 241 58.9
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 9.3e-72 274.2 241 57.7
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.9e-69 266.5 241 56.0
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.4e-66 255.8 241 56.8
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 7.2e-64 248.1 235 52.8
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 4.6e-63 245.4 241 52.7
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 7.9e-63 244.6 241 51.9
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 7.9e-63 244.6 241 51.9
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.4e-62 243.8 237 51.1
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 2.3e-62 243.0 241 53.1
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 3.9e-62 242.3 238 51.3
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.0e-61 240.0 227 54.6
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.2e-60 236.5 234 52.6
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 2.8e-60 236.1 241 55.2
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 6.3e-60 235.0 236 52.1
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 3.1e-59 232.6 244 52.9
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.1e-59 232.3 245 51.8
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 6.9e-59 231.5 238 49.2
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 1.5e-58 230.3 241 51.5
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.0e-58 229.9 238 50.4
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.6e-58 229.6 238 50.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 5.9e-58 228.4 233 49.8
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 5.9e-58 228.4 244 51.6
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 5.0e-57 225.3 227 52.4
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 1.1e-56 224.2 227 49.3
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.1e-56 224.2 241 47.7
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.5e-56 221.9 245 48.2
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 9.4e-56 221.1 241 48.1
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 1.2e-55 220.7 239 47.3
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 3.6e-55 219.2 236 49.2
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.8e-54 216.9 225 50.2
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 3.9e-54 215.7 234 49.6
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 2.6e-53 213.0 228 47.8
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.3e-53 212.6 217 50.2
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 3.7e-52 209.1 241 47.7
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 6.3e-52 208.4 227 47.1
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.1e-51 207.6 246 44.3
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.3e-51 205.3 262 43.5
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 4.5e-50 202.2 241 45.2
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 4.5e-50 202.2 227 46.7
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.0e-49 201.1 231 45.5
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.3e-49 200.7 246 46.7
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.7e-49 200.3 241 42.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.7e-49 200.3 232 48.3
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 6.5e-49 198.4 235 43.8
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 1.1e-48 197.6 241 44.8
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 4.2e-48 195.7 241 45.2
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 1.6e-47 193.7 241 44.0
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 6.1e-47 191.8 239 43.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.0e-47 191.4 238 44.1
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 3.9e-46 189.1 234 43.2
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.2e-46 188.7 235 41.7
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.2e-46 188.7 216 50.0
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 5.2e-46 188.7 238 42.9
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 5.2e-46 188.7 235 43.4
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.5e-45 187.2 235 43.4
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 7.4e-45 184.9 227 42.3
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 2.8e-44 183.0 234 43.2
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 2.8e-44 183.0 231 40.7
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 3.7e-44 182.6 220 46.8
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 8.2e-44 181.4 231 41.1
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 8.2e-44 181.4 231 41.1
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 8.2e-44 181.4 231 42.0
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.8e-43 180.3 231 41.6
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.8e-43 180.3 228 43.0
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 5.3e-43 178.7 231 41.1
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 5.3e-43 178.7 231 41.1
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 5.3e-43 178.7 231 41.1
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 7.0e-43 178.3 249 41.0
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.2e-42 177.6 231 41.1
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.2e-42 177.6 217 45.6
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 2.0e-42 176.8 231 39.0
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 4.5e-42 175.6 231 40.7
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.0e-41 174.5 233 41.2
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 1.3e-41 174.1 195 47.7
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 2.2e-41 173.3 238 42.9
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.2e-41 173.3 198 43.4
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 3.8e-41 172.6 262 40.5
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 3.8e-41 172.6 234 43.6
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 8.5e-41 171.4 229 42.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 8.5e-41 171.4 227 43.2
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.5e-41 171.4 241 39.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.5e-40 169.9 229 43.2
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.5e-40 169.9 231 45.0
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 7.2e-40 168.3 229 41.5
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 9.4e-40 167.9 231 39.8
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.2e-39 167.5 241 38.6
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 2.1e-39 166.8 272 36.4
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 2.7e-39 166.4 251 36.3
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 1.4e-38 164.1 235 39.6
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.8e-38 163.7 229 45.0
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 2.3e-38 163.3 174 52.3
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.8e-38 161.8 229 43.2
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 8.8e-38 161.4 241 38.6
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 1.2e-37 161.0 218 40.8
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.6e-37 159.8 229 40.6
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.3e-36 157.5 93 88.2
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.7e-36 157.1 247 37.2
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 8.3e-36 154.8 238 37.8
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.8e-35 153.7 222 37.8
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.1e-35 152.5 221 38.5
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 2.0e-34 150.2 217 39.6
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 2.0e-34 150.2 217 39.6
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 3.5e-34 149.4 244 34.8
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.9e-34 148.7 239 35.1
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 5.9e-34 148.7 239 35.1
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-33 147.5 230 37.4
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.8e-33 146.0 230 35.2
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 5.0e-33 145.6 180 44.4
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 9.4e-32 141.4 245 37.6
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.0e-30 137.9 232 34.1
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.8e-30 137.1 218 36.2
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 3.0e-30 136.3 219 37.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-29 134.0 236 36.0
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 7.5e-29 131.7 216 40.3
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.2e-28 130.2 226 32.3
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 8.3e-28 128.3 116 54.3
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.1e-27 127.9 144 49.3
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.7e-26 123.2 222 31.5
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 2.3e-25 120.2 131 51.1
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.3e-24 116.3 192 35.4
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 7.2e-24 115.2 76 69.7
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 5.7e-21 105.5 81 61.7
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 7.5e-21 105.1 81 63.0
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.8e-20 103.2 174 36.2
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.7e-20 102.8 145 42.1
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.1e-19 101.3 122 46.7
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 3.2e-19 99.8 124 40.3
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.0e-17 94.7 120 41.7
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.0e-17 94.7 114 47.4
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-17 94.0 56 76.8
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-17 94.0 56 76.8
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 3.9e-17 92.8 81 55.6
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 3.3e-16 89.7 97 48.5
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 4.7e-15 85.9 191 30.9
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 8.3e-12 75.1 75 45.3
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.9e-11 73.9 233 27.5
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 4.6e-10 69.3 60 48.3
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.6e-09 65.5 231 24.2
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 3.6e-07 59.7 62 51.6
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.8e-06 57.4 224 24.1


User provided reference genes

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