Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 1.3e-70 269.6 141 100.0
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 6.0e-55 217.6 117 96.6
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 2.5e-53 212.2 141 83.0
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 5.1e-46 188.0 141 73.0
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 9.6e-45 183.7 142 71.8
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 4.9e-41 171.4 141 68.8
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.5e-40 169.1 143 67.8
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 4.6e-39 164.9 140 66.4
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.3e-38 163.3 118 79.7
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 1.4e-32 143.3 116 67.2
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 1.2e-31 140.2 139 59.0
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 6.1e-31 137.9 137 56.9
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 5.1e-30 134.8 140 56.4
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 8.7e-30 134.0 142 52.8
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.3e-29 132.1 142 55.6
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 7.4e-29 131.0 142 52.8
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 1.3e-28 130.2 138 53.6
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.3e-28 130.2 138 55.8
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 2.2e-28 129.4 129 55.8
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 2.8e-28 129.0 139 54.0
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 3.7e-28 128.6 142 53.5
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 3.7e-28 128.6 142 50.7
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 8.2e-28 127.5 135 54.8
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 1.1e-27 127.1 142 51.4
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 1.8e-27 126.3 137 54.0
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 3.1e-27 125.6 142 54.9
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 4.1e-27 125.2 135 54.8
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 6.9e-27 124.4 137 52.6
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 6.9e-27 124.4 137 52.6
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 9.1e-27 124.0 132 53.8
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 9.1e-27 124.0 141 51.8
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 2.0e-26 122.9 143 50.3
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 2.6e-26 122.5 143 50.3
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 2.6e-26 122.5 141 51.1
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 4.5e-26 121.7 134 52.2
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 4.5e-26 121.7 142 51.4
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 5.9e-26 121.3 134 51.5
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 5.9e-26 121.3 142 47.9
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 1.3e-25 120.2 126 54.0
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.3e-25 120.2 128 53.9
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 1.7e-25 119.8 115 55.7
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 2.2e-25 119.4 127 52.0
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 2.2e-25 119.4 141 51.8
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 2.9e-25 119.0 144 49.3
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 2.9e-25 119.0 136 49.3
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 2.9e-25 119.0 142 48.6
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.9e-25 119.0 138 50.0
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 6.5e-25 117.9 142 50.7
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.1e-24 117.1 138 49.3
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 1.1e-24 117.1 142 47.2
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.2e-24 115.5 140 48.6
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.5e-24 114.8 138 48.6
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 9.4e-24 114.0 141 47.5
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 9.4e-24 114.0 141 49.6
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.2e-23 113.6 141 48.2
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 1.2e-23 113.6 147 46.3
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 1.6e-23 113.2 142 45.8
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 1.6e-23 113.2 140 52.1
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.7e-23 112.5 140 49.3
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 6.1e-23 111.3 139 49.6
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.0e-22 110.5 141 49.6
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.0e-22 110.5 141 48.2
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 1.4e-22 110.2 139 47.5
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 5.1e-22 108.2 141 46.8
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 1.1e-21 107.1 139 45.3
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 7.4e-21 104.4 144 47.2
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 9.7e-21 104.0 141 48.9
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 1.7e-20 103.2 139 46.0
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 2.8e-20 102.4 137 43.8
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 8.2e-20 100.9 135 46.7
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 8.2e-20 100.9 142 44.4
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 1.4e-19 100.1 141 45.4
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 2.4e-19 99.4 124 49.2
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 9.1e-19 97.4 119 49.6
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 9.1e-19 97.4 139 45.3
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.2e-18 97.1 133 43.6
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.5e-18 96.7 133 47.4
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 1.5e-18 96.7 117 50.4
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 7.7e-18 94.4 136 46.3
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 7.7e-18 94.4 109 50.5
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 7.7e-18 94.4 132 43.9
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 6.5e-17 91.3 139 45.3
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 8.5e-17 90.9 118 45.8
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 1.4e-16 90.1 110 49.1
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 2.5e-16 89.4 146 39.7
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 4.2e-16 88.6 145 40.0
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 9.4e-16 87.4 152 42.1
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.1e-15 86.3 83 56.6
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 2.1e-15 86.3 77 55.8
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.0e-14 84.0 86 48.8
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 1.0e-14 84.0 140 42.1
Zm00001eb039300 Zea mays HOM05D000509 ORTHO05D006393 1.0e-14 84.0 135 42.2
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.4e-14 83.6 84 48.8
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.4e-14 83.6 84 48.8
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.4e-14 83.6 136 43.4
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.4e-14 83.6 136 43.4
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 1.8e-14 83.2 147 42.2
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 3.0e-14 82.4 135 38.5
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 3.9e-14 82.0 136 42.6
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.2e-14 81.6 110 45.5
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 6.7e-14 81.3 81 50.6
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.7e-14 81.3 159 39.6
Aqoxy7G00306 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 8.8e-14 80.9 110 45.5
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 8.8e-14 80.9 129 38.8
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 1.5e-13 80.1 87 48.3
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 1.5e-13 80.1 87 48.3
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 2.0e-13 79.7 121 41.3
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 2.0e-13 79.7 110 45.5
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 3.3e-13 79.0 145 40.7
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 4.4e-13 78.6 81 49.4
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.2e-12 76.3 141 39.7
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.2e-12 76.3 119 43.7
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 2.8e-12 75.9 91 48.4
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 8.2e-12 74.3 131 40.5
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 3.1e-11 72.4 119 41.2
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 3.1e-11 72.4 70 52.9
PSO339G4277 Papaver somniferum HOM05D000509 ORTHO05D006393 4.1e-11 72.0 139 37.4
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 7.0e-11 71.2 124 38.7
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 7.0e-11 71.2 124 38.7
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 1.2e-10 70.5 151 37.1
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 3.5e-10 68.9 65 53.8
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 3.5e-10 68.9 95 45.3
PSO063G2671 Papaver somniferum HOM05D000509 ORTHO05D006393 3.5e-10 68.9 137 35.8
Medtr8g095650 Medicago truncatula HOM05D000509 ORTHO05D006393 4.5e-10 68.6 104 45.2
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 5.9e-10 68.2 84 47.6
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 5.9e-10 68.2 84 47.6
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 1.7e-09 66.6 85 48.2
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 6.5e-09 64.7 78 46.2
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 8.5e-09 64.3 86 41.9
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.1e-08 63.9 65 49.2
ATR0680G086 Amborella trichopoda HOM05D000509 ORTHO05D006393 1.9e-08 63.2 122 36.1
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 1.9e-08 63.2 121 36.4
Potri.006G202400 Populus trichocarpa HOM05D000509 ORTHO05D006393 1.9e-08 63.2 92 43.5
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 2.5e-08 62.8 126 38.9
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 4.2e-08 62.0 86 43.0
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.2e-07 60.5 101 36.6
Sc09g0004100 Simmondsia chinensis HOM05D000509 ORTHO05D006393 1.2e-07 60.5 100 38.0
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.4e-06 57.0 121 33.1
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 4.0e-06 55.5 95 42.1
Pp3c7_5630 Physcomitrium patens HOM05D000509 ORTHO05D006393 5.2e-06 55.1 152 31.6


User provided reference genes

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