Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0111000 Rhododendron simsii HOM05D009466 ORTHO05D008136 8.9e-96 353.6 178 100.0
Rhsim07G0112900 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.5e-82 309.7 202 79.7
Rhsim07G0113000 Rhododendron simsii HOM05D009466 ORTHO05D008136 5.6e-82 307.8 173 88.4
Rhsim07G0112300 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.3e-75 286.6 158 89.9
Rhsim07G0114600 Rhododendron simsii HOM05D009466 ORTHO05D010516 6.4e-54 214.5 182 64.8
Rhsim07G0113100 Rhododendron simsii HOM05D009466 ORTHO05D008136 4.2e-53 211.8 169 66.3
Rhsim07G0112600 Rhododendron simsii HOM05D009466 ORTHO05D008136 6.0e-52 208.0 168 65.5
vmacro14065 Vaccinium macrocarpon HOM05D009466 ORTHO05D008136 3.3e-50 202.2 181 59.7
Rhsim07G0114900 Rhododendron simsii HOM05D009466 ORTHO05D008136 9.0e-48 194.1 183 60.1
Rhsim07G0111100 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.1e-45 187.2 119 77.3
Rhsim07G0114200 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.1e-37 160.6 214 47.7
Rhsim07G0114500 Rhododendron simsii HOM05D009466 ORTHO05D008136 4.2e-37 158.7 139 62.6
Rhsim07G0112200 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.2e-36 157.1 95 86.3
Rhsim01G0128400 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.3e-33 147.1 152 55.9
Rhsim07G0114400 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.7e-33 145.6 155 55.5
Rhsim07G0113500 Rhododendron simsii HOM05D009466 ORTHO05D008136 8.2e-33 144.4 152 55.3
Rhsim07G0113600 Rhododendron simsii HOM05D009466 ORTHO05D000001 7.6e-31 137.9 151 51.0
Rhsim07G0114100 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.2e-29 131.3 152 50.7
Rhsim05G0025800 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.3e-26 122.5 114 53.5
Rhsim05G0025300 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.4e-24 117.1 114 52.6
Rhsim05G0036000 Rhododendron simsii HOM05D009466 ORTHO05D008136 4.1e-24 115.5 114 51.8
Rhsim05G0034100 Rhododendron simsii HOM05D009466 ORTHO05D008136 8.5e-22 107.8 105 54.3
Rhsim07G0114700 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.9e-20 101.3 115 56.5
Rhsim07G0111800 Rhododendron simsii HOM05D008848 ORTHO05D008136 4.8e-17 92.0 176 38.1
Rhsim07G0111900 Rhododendron simsii HOM05D008848 ORTHO05D008136 4.8e-17 92.0 163 39.9
Rhsim07G0110900 Rhododendron simsii HOM05D008848 ORTHO05D008136 6.3e-17 91.7 155 37.4
QL01p050041 Quercus lobata HOM05D008848 ORTHO05D008136 8.2e-17 91.3 138 37.7
Rhsim07G0111200 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.1e-16 90.9 170 36.5
Rhsim07G0113400 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.1e-16 90.9 86 58.1
Sabra06G0022800 Salix brachista HOM05D008848 ORTHO05D008136 9.1e-16 87.8 137 38.7
Rhsim03G0062000 Rhododendron simsii HOM05D009287 ORTHO05D008136 4.5e-15 85.5 185 34.6
Potri.006G034450 Populus trichocarpa HOM05D008848 ORTHO05D008136 5.9e-15 85.1 127 39.4
Rhsim07G0111400 Rhododendron simsii HOM05D008848 ORTHO05D008136 5.9e-15 85.1 144 37.5
Actinidia14403 Actinidia chinensis HOM05D009466 ORTHO05D008136 1.0e-14 84.3 141 41.1
Potri.006G034375 Populus trichocarpa HOM05D009287 ORTHO05D008136 1.0e-14 84.3 149 34.9
Nitab4.5_0001381g0030 Nicotiana tabacum HOM05D008848 ORTHO05D008136 1.7e-14 83.6 142 38.0
Nitab4.5_0001590g0010 Nicotiana tabacum HOM05D008848 ORTHO05D008136 1.7e-14 83.6 142 38.7
Rhsim07G0111500 Rhododendron simsii HOM05D008848 ORTHO05D008136 2.2e-14 83.2 150 38.0
Rhsim07G0111700 Rhododendron simsii HOM05D008848 ORTHO05D008136 5.0e-14 82.0 137 41.6
Dinv21661 Davidia involucrata HOM05D008848 ORTHO05D008136 7.2e-13 78.2 141 39.7
Rhsim07G0113800 Rhododendron simsii HOM05D009466 ORTHO05D008136 9.4e-13 77.8 77 54.5
Rhsim07G0115000 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.6e-12 75.9 95 45.3
Solyc08g078360.1 Solanum lycopersicum HOM05D008848 ORTHO05D008136 6.1e-12 75.1 108 43.5
Rhsim03G0061900 Rhododendron simsii HOM05D009287 ORTHO05D008136 8.0e-12 74.7 139 36.0
Peaxi162Scf00155g00133 Petunia axillaris HOM05D008848 ORTHO05D008136 1.0e-11 74.3 108 41.7
QL01p050108 Quercus lobata HOM05D008848 ORTHO05D008136 1.0e-11 74.3 115 34.8
Rhsim07G0113900 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.0e-11 74.3 80 50.0
Potri.016G032783 Populus trichocarpa HOM05D008848 ORTHO05D008136 3.9e-11 72.4 128 32.0
QL07p012771 Quercus lobata HOM05D008848 ORTHO05D008136 3.9e-11 72.4 128 35.9
Glyma.07G061900 Glycine max HOM05D008683 ORTHO05D010884 9.7e-10 67.8 126 34.1
Ciclev10006601m.g Citrus clementina HOM05D010926 ORTHO05D011735 1.7e-09 67.0 117 31.6
Dinv21660 Davidia involucrata HOM05D008848 ORTHO05D008136 1.7e-09 67.0 129 36.4
Nitab4.5_0003050g0040 Nicotiana tabacum HOM05D008848 ORTHO05D008136 1.7e-09 67.0 90 38.9
Manes.12G004101 Manihot esculenta HOM05D008848 ORTHO05D008136 2.8e-09 66.2 118 33.9
Glyma.07G061700 Glycine max HOM05D008683 ORTHO05D010884 3.7e-09 65.9 124 33.9
PGSC0003DMG400033155 Solanum tuberosum HOM05D008848 ORTHO05D008136 3.7e-09 65.9 94 44.7
MD07G1115400 Malus domestica HOM05D010926 ORTHO05D011735 4.8e-09 65.5 90 38.9
MD02G1210800 Malus domestica HOM05D010926 ORTHO05D011735 8.2e-09 64.7 90 40.0
Medtr8g028300 Medicago truncatula HOM05D008683 ORTHO05D010884 1.8e-08 63.5 161 29.8
Medtr8g028315 Medicago truncatula HOM05D008683 ORTHO05D010884 1.8e-08 63.5 114 40.4
Medtr8g028365 Medicago truncatula HOM05D008683 ORTHO05D010884 3.1e-08 62.8 120 37.5
Prupe.2G137400 Prunus persica HOM05D010926 ORTHO05D011735 3.1e-08 62.8 117 33.3
Psat1g148400 Pisum sativum HOM05D008683 ORTHO05D010884 5.3e-08 62.0 113 34.5
TPR.G18156 Trifolium pratense HOM05D008683 ORTHO05D010884 1.6e-07 60.5 130 33.8
TPR.G18169 Trifolium pratense HOM05D008683 ORTHO05D010884 1.6e-07 60.5 152 30.3
Medtr7g086850 Medicago truncatula HOM05D008683 ORTHO05D010884 2.0e-07 60.1 114 33.3
Peaxi162Scf01083g00013 Petunia axillaris HOM05D008848 ORTHO05D008136 2.0e-07 60.1 139 30.9
Ciclev10006726m.g Citrus clementina HOM05D010926 ORTHO05D011735 2.6e-07 59.7 123 29.3
Hma1.2p1_0316F.1_g122780 Hydrangea macrophylla HOM05D010926 ORTHO05D008136 2.6e-07 59.7 128 35.2
Lsat_1_v5_gn_9_77681 Lactuca sativa HOM05D008848 ORTHO05D008136 2.6e-07 59.7 122 32.8
Potri.001G135925 Populus trichocarpa HOM05D010926 ORTHO05D011735 2.6e-07 59.7 86 38.4
Potri.014G061133 Populus trichocarpa HOM05D010926 ORTHO05D011735 2.6e-07 59.7 86 38.4
Potri.014G061266 Populus trichocarpa HOM05D010926 ORTHO05D011735 2.6e-07 59.7 86 38.4
Medtr8g028280 Medicago truncatula HOM05D008683 ORTHO05D010884 4.5e-07 58.9 145 28.3
TPR.G22846 Trifolium pratense HOM05D008683 ORTHO05D010884 4.5e-07 58.9 124 32.3
Prupe.2G179900 Prunus persica HOM05D015530 ORTHO05D008136 5.9e-07 58.5 116 31.0
Medtr8g028355 Medicago truncatula HOM05D008683 ORTHO05D010884 7.7e-07 58.2 124 33.9
TPR.G22850 Trifolium pratense HOM05D008683 ORTHO05D010884 7.7e-07 58.2 161 26.7
Actinidia31512 Actinidia chinensis HOM05D008848 ORTHO05D008136 1.0e-06 57.8 145 33.8
Psat0s780g0080 Pisum sativum HOM05D008683 ORTHO05D010884 1.3e-06 57.4 163 28.8
QL04p038362 Quercus lobata HOM05D010926 ORTHO05D011735 1.7e-06 57.0 115 28.7
TPR.G31852 Trifolium pratense HOM05D008683 ORTHO05D010884 1.7e-06 57.0 110 39.1
VMungo0331G0622 Vigna mungo HOM05D008683 ORTHO05D010884 1.7e-06 57.0 158 27.8
Peaxi162Scf00102g00938 Petunia axillaris HOM05D008848 ORTHO05D008136 2.2e-06 56.6 95 41.1
VMungo0331G0348 Vigna mungo HOM05D008683 ORTHO05D010884 2.2e-06 56.6 136 30.9
Sabra14G0045700 Salix brachista HOM05D010926 ORTHO05D011735 3.8e-06 55.8 128 32.0
Oeu020788.1 Olea europaea HOM05D009287 ORTHO05D008136 6.5e-06 55.1 128 32.0


User provided reference genes

Program Settings