Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0110900 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.5e-200 702.6 353 100.0
Rhsim07G0111400 Rhododendron simsii HOM05D008848 ORTHO05D008136 3.9e-79 299.3 170 90.6
Rhsim07G0111200 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.0e-71 274.6 170 81.8
Rhsim07G0111800 Rhododendron simsii HOM05D008848 ORTHO05D008136 5.3e-68 262.3 172 77.9
Rhsim07G0111900 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.6e-67 260.8 172 80.2
Rhsim07G0111500 Rhododendron simsii HOM05D008848 ORTHO05D008136 3.6e-64 249.6 158 83.5
Rhsim07G0111700 Rhododendron simsii HOM05D008848 ORTHO05D008136 1.4e-52 211.1 135 79.3
Rhsim07G0111100 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.4e-46 189.9 337 40.7
Rhsim07G0111600 Rhododendron simsii HOM05D008848 ORTHO05D008136 7.0e-36 155.6 94 85.1
Nitab4.5_0001590g0010 Nicotiana tabacum HOM05D008848 ORTHO05D008136 7.3e-33 145.6 309 35.6
Rhsim07G0112100 Rhododendron simsii HOM05D008848 ORTHO05D008136 2.3e-31 140.6 95 81.1
Nitab4.5_0001381g0030 Nicotiana tabacum HOM05D008848 ORTHO05D008136 8.3e-29 132.1 339 33.0
FAN06G4503 Fragaria x ananassa HOM05D015530 ORTHO05D008136 5.6e-25 119.4 306 32.7
Actinidia31512 Actinidia chinensis HOM05D008848 ORTHO05D008136 1.8e-23 114.4 335 33.7
Rhsim03G0062000 Rhododendron simsii HOM05D009287 ORTHO05D008136 1.4e-20 104.8 158 41.8
Sabra06G0022800 Salix brachista HOM05D008848 ORTHO05D008136 7.1e-20 102.4 115 48.7
QL07p012914 Quercus lobata HOM05D008848 ORTHO05D008136 1.2e-19 101.7 141 43.3
Rhsim07G0114900 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.2e-19 101.7 147 41.5
Rhsim03G0061900 Rhododendron simsii HOM05D009287 ORTHO05D008136 2.7e-19 100.5 173 39.3
Potri.006G034450 Populus trichocarpa HOM05D008848 ORTHO05D008136 4.6e-19 99.8 115 47.0
QL07p012771 Quercus lobata HOM05D008848 ORTHO05D008136 6.0e-19 99.4 143 44.1
QL01p050041 Quercus lobata HOM05D008848 ORTHO05D008136 1.0e-18 98.6 148 39.2
vmacro14065 Vaccinium macrocarpon HOM05D009466 ORTHO05D008136 2.3e-18 97.4 133 42.9
Dinv21660 Davidia involucrata HOM05D008848 ORTHO05D008136 3.9e-18 96.7 130 44.6
Dinv21661 Davidia involucrata HOM05D008848 ORTHO05D008136 1.9e-17 94.4 101 51.5
Rhsim07G0112600 Rhododendron simsii HOM05D009466 ORTHO05D008136 2.5e-17 94.0 141 43.3
Potri.006G034375 Populus trichocarpa HOM05D009287 ORTHO05D008136 5.6e-17 92.8 179 35.8
Rhsim07G0113100 Rhododendron simsii HOM05D009466 ORTHO05D008136 5.6e-17 92.8 147 41.5
Manes.12G004101 Manihot esculenta HOM05D008848 ORTHO05D008136 9.5e-17 92.0 100 46.0
Prupe.2G179900 Prunus persica HOM05D015530 ORTHO05D008136 1.6e-16 91.3 101 48.5
Rhsim07G0114600 Rhododendron simsii HOM05D009466 ORTHO05D010516 1.6e-16 91.3 143 40.6
Prupe.2G180200 Prunus persica HOM05D015530 ORTHO05D008136 2.1e-16 90.9 157 38.9
Rhsim07G0111000 Rhododendron simsii HOM05D009466 ORTHO05D008136 8.1e-16 89.0 155 37.4
Actinidia14403 Actinidia chinensis HOM05D009466 ORTHO05D008136 6.8e-15 85.9 146 39.7
Solyc08g078360.1 Solanum lycopersicum HOM05D008848 ORTHO05D008136 6.8e-15 85.9 119 46.2
Prupe.2G180000 Prunus persica HOM05D015530 ORTHO05D008136 1.5e-14 84.7 151 37.7
Potri.016G032783 Populus trichocarpa HOM05D008848 ORTHO05D008136 2.0e-14 84.3 109 45.0
Peaxi162Scf00155g00133 Petunia axillaris HOM05D008848 ORTHO05D008136 2.6e-14 84.0 162 38.9
QL01p050108 Quercus lobata HOM05D008848 ORTHO05D008136 3.4e-14 83.6 142 35.2
Rhsim07G0113000 Rhododendron simsii HOM05D009466 ORTHO05D008136 4.4e-14 83.2 154 35.1
Rhsim07G0112300 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.6e-14 82.4 143 36.4
Rhsim07G0114400 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.6e-14 82.4 122 42.6
FAN06G1921 Fragaria x ananassa HOM05D033618 ORTHO05D008136 9.9e-14 82.0 148 35.8
FAN01G1700 Fragaria x ananassa HOM05D012558 ORTHO05D012876 1.3e-13 81.6 318 28.0
Oeu020785.1 Olea europaea HOM05D009287 ORTHO05D008136 1.3e-13 81.6 130 43.8
GSVIVG01001261001 Vitis vinifera HOM05D008848 ORTHO05D008136 1.7e-13 81.3 120 41.7
Oeu034457.1 Olea europaea HOM05D009287 ORTHO05D008136 2.9e-13 80.5 114 45.6
FAN03G2804 Fragaria x ananassa HOM05D012558 ORTHO05D012876 4.9e-13 79.7 339 24.5
FvH4_7g15661 Fragaria vesca HOM05D033618 ORTHO05D008136 6.4e-13 79.3 121 39.7
Glyma.18G222000 Glycine max HOM05D028937 ORTHO05D008136 6.4e-13 79.3 101 41.6
Oeu020786.1 Olea europaea HOM05D009287 ORTHO05D008136 8.4e-13 79.0 116 44.8
Rhsim01G0128400 Rhododendron simsii HOM05D009466 ORTHO05D008136 8.4e-13 79.0 122 39.3
Medtr8g028360 Medicago truncatula HOM05D008683 ORTHO05D010884 1.1e-12 78.6 122 41.0
Rhsim07G0113600 Rhododendron simsii HOM05D009466 ORTHO05D000001 1.1e-12 78.6 122 41.0
FAN21G0420 Fragaria x ananassa HOM05D015530 ORTHO05D008136 1.4e-12 78.2 145 35.9
Oeu020784.1 Olea europaea HOM05D009287 ORTHO05D008136 1.4e-12 78.2 105 47.6
Peaxi162Scf00102g00938 Petunia axillaris HOM05D008848 ORTHO05D008136 1.4e-12 78.2 106 43.4
Oeu036307.1 Olea europaea HOM05D009287 ORTHO05D008136 1.9e-12 77.8 111 43.2
Ciclev10006726m.g Citrus clementina HOM05D010926 ORTHO05D011735 3.2e-12 77.0 136 34.6
Rhsim07G0112900 Rhododendron simsii HOM05D009466 ORTHO05D008136 3.2e-12 77.0 144 37.5
Ciclev10006601m.g Citrus clementina HOM05D010926 ORTHO05D011735 4.1e-12 76.6 120 35.0
FvH4_3g38201 Fragaria vesca HOM05D015530 ORTHO05D008136 4.1e-12 76.6 133 36.8
Peaxi162Scf01083g00013 Petunia axillaris HOM05D008848 ORTHO05D008136 5.4e-12 76.3 162 32.7
Rhsim07G0113500 Rhododendron simsii HOM05D009466 ORTHO05D008136 5.4e-12 76.3 122 41.0
Rhsim07G0114200 Rhododendron simsii HOM05D009466 ORTHO05D008136 7.1e-12 75.9 122 41.0
GSVIVG01019271001 Vitis vinifera HOM05D008848 ORTHO05D008136 9.2e-12 75.5 164 30.5
Medtr7g075160 Medicago truncatula HOM05D028937 ORTHO05D008136 1.6e-11 74.7 119 39.5
Oeu020788.1 Olea europaea HOM05D009287 ORTHO05D008136 1.6e-11 74.7 103 45.6
Prupe.2G180300 Prunus persica HOM05D015530 ORTHO05D008136 1.6e-11 74.7 98 43.9
Rhsim05G0025800 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.6e-11 74.7 116 38.8
Rhsim07G0114100 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.6e-11 74.7 98 44.9
Oeu020787.1 Olea europaea HOM05D009287 ORTHO05D008136 2.1e-11 74.3 128 42.2
TPR.G18156 Trifolium pratense HOM05D008683 ORTHO05D010884 2.1e-11 74.3 132 36.4
Medtr8g028300 Medicago truncatula HOM05D008683 ORTHO05D010884 2.7e-11 73.9 131 38.2
Medtr8g028350 Medicago truncatula HOM05D008683 ORTHO05D010884 2.7e-11 73.9 153 35.3
Rhsim05G0025300 Rhododendron simsii HOM05D009466 ORTHO05D008136 2.7e-11 73.9 131 38.2
Medtr8g028365 Medicago truncatula HOM05D008683 ORTHO05D010884 3.5e-11 73.6 116 43.1
Rhsim05G0036000 Rhododendron simsii HOM05D009466 ORTHO05D008136 4.6e-11 73.2 120 39.2
Medtr7g086850 Medicago truncatula HOM05D008683 ORTHO05D010884 6.0e-11 72.8 112 40.2
PGSC0003DMG400044591 Solanum tuberosum HOM05D008848 ORTHO05D008136 6.0e-11 72.8 107 39.3
Psat4g213640 Pisum sativum HOM05D008683 ORTHO05D010884 1.0e-10 72.0 141 37.6
Glyma.07G066200 Glycine max HOM05D008683 ORTHO05D010884 1.3e-10 71.6 111 35.1
Phvul.010G103650 Phaseolus vulgaris HOM05D008683 ORTHO05D010884 1.3e-10 71.6 117 35.9
Phvul.008G075150 Phaseolus vulgaris HOM05D028937 ORTHO05D008136 1.7e-10 71.2 114 36.8
Phvul.010G103600 Phaseolus vulgaris HOM05D008683 ORTHO05D010884 1.7e-10 71.2 131 35.9
Rhsim07G0114500 Rhododendron simsii HOM05D009466 ORTHO05D008136 2.3e-10 70.9 95 45.3
DCAR_002190 Daucus carota HOM05D020340 ORTHO05D008136 3.0e-10 70.5 150 33.3
Medtr8g028315 Medicago truncatula HOM05D008683 ORTHO05D010884 3.0e-10 70.5 150 33.3
Glyma.09G267900 Glycine max HOM05D028937 ORTHO05D008136 3.9e-10 70.1 95 41.1
Lsat_1_v5_gn_9_77681 Lactuca sativa HOM05D008848 ORTHO05D008136 3.9e-10 70.1 119 37.0
Sabra14G0045000 Salix brachista HOM05D010926 ORTHO05D011735 5.1e-10 69.7 126 31.7
Oeu015942.1 Olea europaea HOM05D009287 ORTHO05D008136 6.6e-10 69.3 112 43.8
Oeu018043.1 Olea europaea HOM05D009287 ORTHO05D008136 6.6e-10 69.3 113 42.5
FAN06G1149 Fragaria x ananassa HOM05D027471 ORTHO05D012876 1.1e-09 68.6 128 35.2
Sabra14G0045700 Salix brachista HOM05D010926 ORTHO05D011735 1.5e-09 68.2 139 31.7
Phvul.010G103450 Phaseolus vulgaris HOM05D008683 ORTHO05D010884 1.9e-09 67.8 157 30.6
Phvul.010G103500 Phaseolus vulgaris HOM05D008683 ORTHO05D010884 1.9e-09 67.8 157 30.6
Hma1.2p1_0316F.1_g122780 Hydrangea macrophylla HOM05D010926 ORTHO05D008136 2.5e-09 67.4 97 39.2
DCAR_006844 Daucus carota HOM05D020340 ORTHO05D008136 3.3e-09 67.0 119 35.3
TPR.G22850 Trifolium pratense HOM05D008683 ORTHO05D010884 3.3e-09 67.0 124 34.7
Medtr8g028355 Medicago truncatula HOM05D008683 ORTHO05D010884 4.3e-09 66.6 129 36.4
Prupe.2G143000 Prunus persica HOM05D012558 ORTHO05D012876 4.3e-09 66.6 105 40.0
TPR.G22846 Trifolium pratense HOM05D008683 ORTHO05D010884 4.3e-09 66.6 178 32.0
FAN06G2646 Fragaria x ananassa HOM05D006804 ORTHO05D012876 5.6e-09 66.2 122 31.1
FAN06G2981 Fragaria x ananassa HOM05D006804 ORTHO05D012876 5.6e-09 66.2 122 31.1
Glyma.07G061700 Glycine max HOM05D008683 ORTHO05D010884 5.6e-09 66.2 119 37.0
Glyma.07G061900 Glycine max HOM05D008683 ORTHO05D010884 5.6e-09 66.2 119 37.0
Glyma.07G062000 Glycine max HOM05D008683 ORTHO05D010884 7.3e-09 65.9 143 31.5
Psat1g148400 Pisum sativum HOM05D008683 ORTHO05D010884 7.3e-09 65.9 97 39.2
Prupe.2G180100 Prunus persica HOM05D015530 ORTHO05D008136 7.3e-09 65.9 101 38.6
Potri.014G061133 Populus trichocarpa HOM05D010926 ORTHO05D011735 9.6e-09 65.5 123 30.9
Rhsim07G0113900 Rhododendron simsii HOM05D009466 ORTHO05D008136 9.6e-09 65.5 105 45.7
Oeu015938.1 Olea europaea HOM05D009287 ORTHO05D008136 1.2e-08 65.1 113 42.5
PGSC0003DMG400033155 Solanum tuberosum HOM05D008848 ORTHO05D008136 1.2e-08 65.1 145 37.2
DCAR_030931 Daucus carota HOM05D020340 ORTHO05D008136 1.6e-08 64.7 158 32.3
Rhsim05G0034100 Rhododendron simsii HOM05D009466 ORTHO05D008136 1.6e-08 64.7 96 40.6
FAN01G0086 Fragaria x ananassa HOM05D027471 ORTHO05D012876 2.1e-08 64.3 128 34.4
MD07G1115400 Malus domestica HOM05D010926 ORTHO05D011735 2.1e-08 64.3 88 43.2
Medtr8g028275 Medicago truncatula HOM05D008683 ORTHO05D010884 2.1e-08 64.3 108 36.1
Nitab4.5_0003050g0040 Nicotiana tabacum HOM05D008848 ORTHO05D008136 2.1e-08 64.3 86 40.7
Oeu026046.1 Olea europaea HOM05D009287 ORTHO05D008136 2.1e-08 64.3 121 38.0
FAN11G2821 Fragaria x ananassa HOM05D015530 ORTHO05D008136 2.8e-08 63.9 103 38.8
Psat0s780g0080 Pisum sativum HOM05D008683 ORTHO05D010884 2.8e-08 63.9 130 34.6
Rhsim07G0031400 Rhododendron simsii HOM05D010926 ORTHO05D011735 2.8e-08 63.9 127 33.1
FAN06G4246 Fragaria x ananassa HOM05D027471 ORTHO05D012876 3.6e-08 63.5 128 33.6
FAN06G4280 Fragaria x ananassa HOM05D033618 ORTHO05D008136 3.6e-08 63.5 90 40.0
Glyma.07G065900 Glycine max HOM05D008683 ORTHO05D010884 3.6e-08 63.5 109 37.6
Potri.001G135925 Populus trichocarpa HOM05D010926 ORTHO05D011735 3.6e-08 63.5 123 30.9
Potri.014G061266 Populus trichocarpa HOM05D010926 ORTHO05D011735 3.6e-08 63.5 123 30.9
Prupe.2G143100 Prunus persica HOM05D012558 ORTHO05D012876 3.6e-08 63.5 102 35.3
VMungo1114G0001 Vigna mungo HOM05D008683 ORTHO05D010884 4.7e-08 63.2 133 35.3
MD02G1210800 Malus domestica HOM05D010926 ORTHO05D011735 8.1e-08 62.4 88 44.3
QL04p038305 Quercus lobata HOM05D010926 ORTHO05D011735 8.1e-08 62.4 118 33.9
QL04p038362 Quercus lobata HOM05D010926 ORTHO05D011735 8.1e-08 62.4 86 40.7
TPR.G18157 Trifolium pratense HOM05D008683 ORTHO05D010884 8.1e-08 62.4 87 39.1
Actinidia12677 Actinidia chinensis HOM05D027244 ORTHO05D026415 1.1e-07 62.0 105 33.3
DCAR_002189 Daucus carota HOM05D000455 ORTHO05D000434 1.8e-07 61.2 146 28.8
DCAR_030928 Daucus carota HOM05D020340 ORTHO05D008136 2.4e-07 60.8 159 32.1
Oeu026050.1 Olea europaea HOM05D009287 ORTHO05D008136 2.4e-07 60.8 123 35.8
Dinv06361 Davidia involucrata HOM05D028634 ORTHO05D022500 3.1e-07 60.5 80 37.5
Eucgr.D00561 Eucalyptus grandis HOM05D008848 ORTHO05D008136 3.1e-07 60.5 107 39.3
VMungo0331G0622 Vigna mungo HOM05D008683 ORTHO05D010884 3.1e-07 60.5 137 28.5
Ciclev10007031m.g Citrus clementina HOM05D010926 ORTHO05D011735 5.2e-07 59.7 83 33.7
Peaxi162Scf00214g00011 Petunia axillaris HOM05D008848 ORTHO05D008136 5.2e-07 59.7 86 44.2
Lalb_Chr07g0190261 Lupinus albus HOM05D017052 ORTHO05D011735 6.9e-07 59.3 104 31.7
Manes.17G056250 Manihot esculenta HOM05D008848 ORTHO05D008136 6.9e-07 59.3 139 34.5
Gorai.011G287300 Gossypium raimondii HOM05D009631 ORTHO05D011824 9.0e-07 58.9 288 22.9
Medtr4g027195 Medicago truncatula HOM05D017052 ORTHO05D011735 9.0e-07 58.9 127 28.3
Prupe.2G076600 Prunus persica HOM05D012558 ORTHO05D012876 9.0e-07 58.9 91 39.6
Sabra13G0031000 Salix brachista HOM05D008789 ORTHO05D010785 9.0e-07 58.9 125 32.0
Phvul.010G072200 Phaseolus vulgaris HOM05D017052 ORTHO05D011735 1.5e-06 58.2 130 34.6
TPR.G31852 Trifolium pratense HOM05D008683 ORTHO05D010884 1.5e-06 58.2 76 43.4
DCAR_030935 Daucus carota HOM05D020340 ORTHO05D008136 2.0e-06 57.8 126 33.3
Nitab4.5_0000190g0220 Nicotiana tabacum HOM05D008848 ORTHO05D049370 2.6e-06 57.4 116 35.3
Oeu034177.1 Olea europaea HOM05D009287 ORTHO05D008136 2.6e-06 57.4 104 40.4
TPR.G18169 Trifolium pratense HOM05D008683 ORTHO05D010884 4.4e-06 56.6 125 33.6
Medtr8g028280 Medicago truncatula HOM05D008683 ORTHO05D010884 5.8e-06 56.2 88 35.2
Oeu010648.1 Olea europaea HOM05D009287 ORTHO05D008136 5.8e-06 56.2 104 36.5
Rhsim07G0113400 Rhododendron simsii HOM05D009466 ORTHO05D008136 5.8e-06 56.2 84 40.5
VMungo0331G0348 Vigna mungo HOM05D008683 ORTHO05D010884 5.8e-06 56.2 96 34.4
Prupe.2G137400 Prunus persica HOM05D010926 ORTHO05D011735 7.6e-06 55.8 123 32.5
Dinv06358 Davidia involucrata HOM05D028634 ORTHO05D022500 9.9e-06 55.5 141 31.9


User provided reference genes

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