Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0108300 Rhododendron simsii HOM05D008099 ORTHO05D010084 2.2e-134 482.3 239 100.0
Sopen08g003320 Solanum pennellii HOM05D008099 ORTHO05D010084 2.7e-23 113.2 123 48.0
Solyc08g007375.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 3.5e-23 112.8 123 48.0
Hma1.2p1_0316F.1_g123190 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 4.6e-23 112.5 122 51.6
PGSC0003DMG400012531 Solanum tuberosum HOM05D008099 ORTHO05D010084 3.0e-22 109.8 123 46.3
Hma1.2p1_0316F.1_g123200 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 1.8e-19 100.5 122 49.2
Cc08_g12470 Coffea canephora HOM05D008099 ORTHO05D010084 6.9e-19 98.6 122 47.5
Gorai.004G198900 Gossypium raimondii HOM05D008099 ORTHO05D010084 6.9e-19 98.6 122 46.7
SalBow6G1675 Salvia bowleyana HOM05D008099 ORTHO05D010084 9.0e-19 98.2 119 47.9
Potri.001G158100 Populus trichocarpa HOM05D008099 ORTHO05D010084 1.0e-17 94.7 122 45.9
Actinidia05205 Actinidia chinensis HOM05D008099 ORTHO05D010084 1.7e-17 94.0 124 46.0
Sabra01G0133400 Salix brachista HOM05D008099 ORTHO05D010084 4.9e-17 92.4 122 43.4
Thecc.03G251800 Theobroma cacao HOM05D008099 ORTHO05D010084 4.9e-17 92.4 122 46.7
CiPaw.12G109700 Carya illinoinensis HOM05D008099 ORTHO05D010084 2.5e-16 90.1 122 45.9
PGSC0003DMG400035312 Solanum tuberosum HOM05D008099 ORTHO05D010084 3.2e-16 89.7 123 45.5
Potri.003G076700 Populus trichocarpa HOM05D008099 ORTHO05D010084 4.2e-16 89.4 122 44.3
Ciclev10022924m.g Citrus clementina HOM05D008099 ORTHO05D010084 1.2e-15 87.8 101 48.5
COL.COLO4_37181 Corchorus olitorius HOM05D008099 ORTHO05D010084 3.5e-15 86.3 122 40.2
TAR374G1517 Trochodendron aralioides HOM05D008099 ORTHO05D010084 3.5e-15 86.3 122 43.4
TAR627G0883 Trochodendron aralioides HOM05D008099 ORTHO05D010084 4.6e-15 85.9 122 42.6
TWI60G1554 Tripterygium wilfordii HOM05D008099 ORTHO05D010084 6.0e-15 85.5 114 45.6
PGSC0003DMG400013812 Solanum tuberosum HOM05D008099 ORTHO05D010084 1.0e-14 84.7 123 43.1
Solyc06g060675.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 2.3e-14 83.6 123 42.3
Sopen06g020800 Solanum pennellii HOM05D008099 ORTHO05D010084 2.3e-14 83.6 123 42.3
TAR624G1172 Trochodendron aralioides HOM05D008099 ORTHO05D010084 3.0e-14 83.2 122 44.3
Cpa.g.sc29.154 Carica papaya HOM05D008099 ORTHO05D010084 8.7e-14 81.6 122 40.2
Oeu019597.1 Olea europaea HOM05D008099 ORTHO05D010084 1.9e-13 80.5 123 42.3
MD04G1064000 Malus domestica HOM05D008099 ORTHO05D010084 9.7e-13 78.2 129 38.8
Nn8g39479 Nelumbo nucifera HOM05D008099 ORTHO05D010084 9.7e-13 78.2 120 42.5
Sc22g0000850 Simmondsia chinensis HOM05D008099 ORTHO05D010084 1.3e-12 77.8 105 46.7
Gorai.008G235500 Gossypium raimondii HOM05D008099 ORTHO05D010084 1.6e-12 77.4 122 40.2
RcHm_v2.0_Chr7g0203191 Rosa chinensis HOM05D008099 ORTHO05D010084 2.2e-12 77.0 132 38.6
Cc08_g12450 Coffea canephora HOM05D008099 ORTHO05D010084 2.8e-12 76.6 99 48.5
Manes.01G080400 Manihot esculenta HOM05D008099 ORTHO05D010084 2.8e-12 76.6 124 38.7
Nn6g33963 Nelumbo nucifera HOM05D008099 ORTHO05D010084 2.8e-12 76.6 120 43.3
SGA_v2.0_scaffold52G19121 Striga asiatica HOM05D002583 ORTHO05D002776 2.8e-12 76.6 105 42.9
Gohir.A12G217300 Gossypium hirsutum HOM05D008099 ORTHO05D010084 3.7e-12 76.3 122 40.2
Gohir.D12G219832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 3.7e-12 76.3 122 40.2
Atru.chr9.1318 Acer truncatum HOM05D008099 ORTHO05D010084 4.8e-12 75.9 114 41.2
Eucgr.D02077 Eucalyptus grandis HOM05D008099 ORTHO05D010084 3.1e-11 73.2 125 37.6
FAN04G2136 Fragaria x ananassa HOM05D008099 ORTHO05D010084 6.9e-11 72.0 136 36.8
CiPaw.11G154100 Carya illinoinensis HOM05D008099 ORTHO05D010084 1.2e-10 71.2 123 40.7
FAN18G4449 Fragaria x ananassa HOM05D008099 ORTHO05D010084 4.5e-10 69.3 139 36.0
Migut.N00880 Erythranthe guttata HOM05D008099 ORTHO05D010084 5.9e-10 68.9 92 42.4
FAN08G3271 Fragaria x ananassa HOM05D008099 ORTHO05D010084 5.9e-10 68.9 135 35.6
FAN18G2867 Fragaria x ananassa HOM05D008099 ORTHO05D010084 5.9e-10 68.9 139 36.0
Gohir.A03G008200 Gossypium hirsutum HOM05D008099 ORTHO05D010084 5.9e-10 68.9 112 44.6
Lsat_1_v5_gn_3_841 Lactuca sativa HOM05D008099 ORTHO05D010084 5.9e-10 68.9 124 34.7
FvH4_5g18850 Fragaria vesca HOM05D008099 ORTHO05D010084 7.7e-10 68.6 140 35.7
Lsat_1_v5_gn_6_91081 Lactuca sativa HOM05D008099 ORTHO05D010084 2.2e-09 67.0 120 31.7
Lsat_1_v5_gn_5_120200 Lactuca sativa HOM05D008099 ORTHO05D010084 2.9e-09 66.6 122 35.2
Aqoxy7G00810 Aquilegia oxysepala HOM05D008099 ORTHO05D010084 3.8e-09 66.2 125 39.2
Cfa012714 Carpinus fangiana HOM05D008099 ORTHO05D010084 3.8e-09 66.2 122 41.0
ECA233G2908 Erigeron canadensis HOM05D008099 ORTHO05D010084 6.5e-09 65.5 120 31.7
Gohir.D03G162700 Gossypium hirsutum HOM05D008099 ORTHO05D010084 6.5e-09 65.5 112 42.9
Gorai.003G171300 Gossypium raimondii HOM05D008099 ORTHO05D010084 6.5e-09 65.5 112 42.9
DCAR_004951 Daucus carota HOM05D008099 ORTHO05D010084 1.1e-08 64.7 111 36.9
Prupe.5G069300 Prunus persica HOM05D008099 ORTHO05D010084 1.1e-08 64.7 125 35.2
Gohir.A08G170632 Gossypium hirsutum HOM05D008099 ORTHO05D010084 4.2e-08 62.8 70 48.6
Gohir.D08G188832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 4.2e-08 62.8 70 48.6
Lsat_1_v5_gn_4_4600 Lactuca sativa HOM05D008099 ORTHO05D010084 5.5e-08 62.4 107 34.6
Duzib205G0280 Durio zibethinus HOM05D003437 ORTHO05D004070 1.6e-07 60.8 105 36.2
DCAR_027775 Daucus carota HOM05D008099 ORTHO05D010084 1.0e-06 58.2 101 38.6
Ah.12g056830 Amaranthus hybridus HOM05D054031 ORTHO05D010084 1.4e-06 57.8 123 35.0


User provided reference genes

Program Settings