Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.3e-174 613.6 310 100.0
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 3.0e-139 498.8 355 74.9
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 8.6e-139 497.3 312 82.7
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.2e-137 491.1 384 71.9
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 2.8e-121 439.1 334 69.5
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.0e-119 433.0 326 69.3
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.6e-119 432.6 333 67.0
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.7e-118 429.9 326 68.7
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.3e-114 415.6 331 63.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 5.6e-114 414.8 333 64.9
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.6e-113 413.3 340 63.8
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.7e-113 412.1 333 62.5
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 5.3e-112 408.3 317 68.8
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 3.4e-111 405.6 333 62.5
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.7e-110 403.3 331 61.0
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.7e-110 403.3 333 61.9
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 2.2e-110 402.9 333 63.1
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 2.5e-109 399.4 325 64.0
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 9.3e-109 397.5 331 62.5
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.6e-108 396.7 330 61.2
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 2.1e-108 396.4 338 59.8
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.7e-107 391.3 331 60.4
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 2.5e-106 389.4 320 64.4
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 2.5e-106 389.4 332 61.1
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.7e-106 387.5 325 60.6
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 1.3e-105 387.1 335 59.1
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.1e-104 384.0 330 60.0
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 1.1e-104 384.0 333 59.5
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.8e-104 383.3 335 59.4
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 2.4e-104 382.9 344 59.6
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 4.1e-104 382.1 331 59.5
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.0e-103 379.8 332 59.3
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.0e-103 379.8 315 62.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 3.4e-103 379.0 285 67.4
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 4.5e-103 378.6 334 59.0
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 5.9e-103 378.3 323 61.3
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.9e-103 378.3 258 71.7
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 7.6e-103 377.9 331 59.5
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 7.6e-103 377.9 332 59.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.0e-102 377.5 332 59.3
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.9e-102 375.9 368 54.6
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.9e-102 375.9 333 58.9
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 8.5e-102 374.4 332 59.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.5e-102 374.4 332 59.0
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.5e-101 372.9 326 59.8
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.2e-101 372.5 336 58.9
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 4.2e-101 372.1 330 59.4
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.5e-101 371.7 332 58.7
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 9.3e-101 370.9 330 58.8
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.6e-100 370.2 330 59.1
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.7e-100 369.4 330 59.1
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.7e-100 369.4 328 57.0
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.1e-100 368.2 326 59.2
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 6.1e-100 368.2 326 59.2
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 7.9e-100 367.9 257 71.2
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.3e-99 367.1 363 54.3
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 3.9e-99 365.5 333 56.8
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 5.1e-99 365.2 330 57.9
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 5.1e-99 365.2 321 57.9
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.1e-98 364.0 365 54.0
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.5e-98 363.6 330 57.6
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.9e-98 363.2 331 58.6
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.9e-98 363.2 333 57.7
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.9e-98 363.2 333 57.4
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 2.5e-98 362.8 330 57.9
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 2.5e-98 362.8 322 58.1
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 5.7e-98 361.7 330 57.3
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 5.7e-98 361.7 330 58.2
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.7e-98 361.7 330 57.6
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.7e-98 361.7 330 57.6
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 7.4e-98 361.3 330 57.6
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-97 360.5 331 58.3
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 2.2e-97 359.8 327 56.9
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 3.7e-97 359.0 334 54.8
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 3.7e-97 359.0 324 56.8
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 6.3e-97 358.2 334 54.5
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.4e-96 357.1 330 56.1
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 2.4e-96 356.3 329 57.1
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 4.1e-96 355.5 255 66.7
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 6.9e-96 354.8 321 57.0
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.2e-95 354.0 330 57.6
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 2.6e-95 352.8 311 59.5
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 5.9e-95 351.7 319 58.0
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 7.7e-95 351.3 321 57.0
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-94 350.5 330 59.7
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.3e-94 350.5 380 51.8
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.1e-93 347.4 323 56.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.5e-93 346.3 321 54.8
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.2e-93 345.9 255 67.5
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.1e-92 343.2 245 70.2
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.1e-90 337.4 322 55.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.0e-90 336.7 333 55.6
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 8.2e-89 331.3 263 62.0
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 5.9e-87 325.1 322 52.8
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 2.2e-86 323.2 320 53.8
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.7e-84 316.2 288 58.0
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.0e-83 314.3 328 50.6
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.7e-76 289.7 255 57.3
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.3e-73 280.8 326 48.5
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 2.2e-73 280.0 310 51.9
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 4.8e-73 278.9 327 47.4
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.8e-72 276.9 249 56.6
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 5.9e-71 271.9 236 59.3
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 7.5e-66 255.0 332 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 4.2e-61 239.2 326 42.0
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 2.6e-58 229.9 310 45.8
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.6e-55 220.7 330 39.1
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.3e-54 217.6 330 37.9
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.3e-54 217.6 215 53.0
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.7e-54 217.2 331 37.8
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 2.9e-54 216.5 230 51.3
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.2e-52 211.1 193 58.0
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.0e-51 208.0 169 63.3
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 4.0e-51 206.1 188 56.4
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 6.8e-43 178.7 165 56.4
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 3.0e-38 163.3 141 58.2
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 3.3e-37 159.8 200 50.0
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 1.2e-31 141.4 282 33.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.6e-31 139.4 132 57.6
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.6e-31 139.4 151 47.7
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 4.7e-28 129.4 119 57.1
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 2.0e-26 124.0 270 34.8
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.0e-26 124.0 264 31.4
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.6e-26 123.6 147 45.6
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.7e-25 120.9 123 49.6
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.2e-20 102.4 245 31.0
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 5.2e-19 99.4 78 65.4
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 9.3e-16 88.6 281 28.8
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.0e-14 85.1 114 47.4
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 3.9e-14 83.2 65 64.6
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 3.3e-13 80.1 59 66.1
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 6.9e-11 72.4 131 35.1
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.4e-08 64.7 60 51.7
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.4e-08 64.7 85 47.1


User provided reference genes

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