Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0106500 Rhododendron simsii HOM05D006632 ORTHO05D008224 2.0e-169 599.0 300 100.0
Rhsim07G0107100 Rhododendron simsii HOM05D006632 ORTHO05D008224 6.9e-117 424.5 300 76.3
vmacro14091 Vaccinium macrocarpon HOM05D006632 ORTHO05D008224 5.5e-98 361.7 345 60.0
Actinidia05199 Actinidia chinensis HOM05D006632 ORTHO05D008224 1.4e-93 347.1 302 62.3
Nn6g34002 Nelumbo nucifera HOM05D006632 ORTHO05D008224 1.3e-91 340.5 294 62.2
GSVIVG01001305001 Vitis vinifera HOM05D006632 ORTHO05D008224 9.4e-90 334.3 295 60.3
Hma1.2p1_0916F.1_g236520 Hydrangea macrophylla HOM05D006632 ORTHO05D008224 1.2e-89 334.0 298 60.1
Gohir.D12G222100 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.5e-87 327.0 300 61.3
Oeu062975.1 Olea europaea HOM05D006632 ORTHO05D008224 2.0e-87 326.6 297 59.3
TWI81G0482 Tripterygium wilfordii HOM05D006632 ORTHO05D008224 2.6e-87 326.2 302 58.9
CSS0044555 Camellia sinensis var. sinensis HOM05D006632 ORTHO05D008224 5.7e-87 325.1 298 60.1
Gorai.008G238100 Gossypium raimondii HOM05D006632 ORTHO05D008224 7.4e-87 324.7 300 60.7
Migut.A00961 Erythranthe guttata HOM05D006632 ORTHO05D008224 1.3e-86 323.9 306 58.8
Gohir.A12G219900 Gossypium hirsutum HOM05D006632 ORTHO05D008224 1.3e-86 323.9 300 60.7
PSO063G6697 Papaver somniferum HOM05D006632 ORTHO05D008224 1.3e-86 323.9 299 56.9
Cc08_g12700 Coffea canephora HOM05D006632 ORTHO05D008224 1.7e-86 323.6 299 59.5
Duzib205G0315 Durio zibethinus HOM05D006632 ORTHO05D008224 4.8e-86 322.0 298 60.4
PSO782G3692 Papaver somniferum HOM05D006632 ORTHO05D008224 1.8e-85 320.1 299 55.9
Thecc.03G254100 Theobroma cacao HOM05D006632 ORTHO05D008224 2.4e-85 319.7 298 60.1
Nitab4.5_0004059g0060 Nicotiana tabacum HOM05D006632 ORTHO05D008224 9.1e-85 317.8 303 58.7
Sopen08g003360 Solanum pennellii HOM05D006632 ORTHO05D008224 9.1e-85 317.8 297 59.3
Cfa012746 Carpinus fangiana HOM05D006632 ORTHO05D008224 4.5e-84 315.5 300 59.0
PGSC0003DMG400012506 Solanum tuberosum HOM05D006632 ORTHO05D008224 4.5e-84 315.5 297 58.9
Solyc08g007410.4 Solanum lycopersicum HOM05D006632 ORTHO05D008224 7.7e-84 314.7 297 58.9
MSTRG.25531 Avicennia marina HOM05D006632 ORTHO05D008224 1.3e-83 313.9 294 56.5
Nitab4.5_0001707g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 1.3e-83 313.9 308 56.5
Prupe.5G072600 Prunus persica HOM05D006632 ORTHO05D008224 6.5e-83 311.6 303 57.4
Potri.003G111100 Populus trichocarpa HOM05D006632 ORTHO05D008224 8.5e-83 311.2 300 57.3
Lsat_1_v5_gn_6_91561 Lactuca sativa HOM05D006632 ORTHO05D008224 1.1e-82 310.8 298 57.4
CANSAT21G1011 Cannabis sativa HOM05D006632 ORTHO05D008224 2.5e-82 309.7 300 58.3
Haze_07882 Corylus avellana HOM05D006632 ORTHO05D008224 4.2e-82 308.9 295 58.6
Manes.01G079200 Manihot esculenta HOM05D006632 ORTHO05D008224 1.2e-81 307.4 304 57.6
Potri.008G135980 Populus trichocarpa HOM05D006632 ORTHO05D008224 1.2e-81 307.4 300 56.7
Lj2A215T22 Lonicera japonica HOM05D006632 ORTHO05D008224 3.6e-81 305.8 294 56.5
Atru.chr9.1340 Acer truncatum HOM05D006632 ORTHO05D008224 4.7e-81 305.4 297 56.2
Nitab4.5_0000312g0210 Nicotiana tabacum HOM05D006632 ORTHO05D008224 6.1e-81 305.1 297 55.9
Glyma.05G058200 Glycine max HOM05D006632 ORTHO05D008224 1.0e-80 304.3 300 56.0
PGR042G2887 Punica granatum HOM05D006632 ORTHO05D008224 1.0e-80 304.3 298 55.4
Sed0019633 Sechium edule HOM05D006632 ORTHO05D008224 1.0e-80 304.3 295 57.3
CiPaw.11G152400 Carya illinoinensis HOM05D006632 ORTHO05D008224 3.0e-80 302.8 300 56.3
RcHm_v2.0_Chr7g0202881 Rosa chinensis HOM05D006632 ORTHO05D008224 1.5e-79 300.4 301 56.5
ClCG10G002780 Citrullus lanatus HOM05D006632 ORTHO05D008224 3.3e-79 299.3 294 55.8
VMungo0251G2371 Vigna mungo HOM05D006632 ORTHO05D008224 4.4e-79 298.9 297 55.6
MELO3C013948.2 Cucumis melo HOM05D006632 ORTHO05D008224 5.7e-79 298.5 294 56.1
ECA240G2825 Erigeron canadensis HOM05D006632 ORTHO05D008224 5.7e-79 298.5 301 55.8
Phvul.003G219500 Phaseolus vulgaris HOM05D006632 ORTHO05D008224 1.3e-78 297.4 300 54.7
Carub.0007s2499 Capsella rubella HOM05D006632 ORTHO05D008224 1.7e-78 297.0 297 55.9
Ciclev10022042m.g Citrus clementina HOM05D006632 ORTHO05D008224 2.2e-78 296.6 300 55.7
Psat4g070160 Pisum sativum HOM05D006632 ORTHO05D008224 2.2e-78 296.6 298 57.0
Medtr4g101100 Medicago truncatula HOM05D006632 ORTHO05D008224 2.8e-78 296.2 310 55.2
AL7G38450 Arabidopsis lyrata HOM05D006632 ORTHO05D008224 3.7e-78 295.8 297 56.2
AT4G16510 Arabidopsis thaliana HOM05D006632 ORTHO05D008224 3.7e-78 295.8 297 55.9
TPR.G37669 Trifolium pratense HOM05D006632 ORTHO05D008224 3.7e-78 295.8 298 57.0
CARHR222910 Cardamine hirsuta HOM05D006632 ORTHO05D008224 4.8e-78 295.4 298 55.7
DCAR_027784 Daucus carota HOM05D006632 ORTHO05D008224 8.2e-78 294.7 302 53.6
Dinv21617 Davidia involucrata HOM05D006632 ORTHO05D008224 1.8e-77 293.5 297 55.6
Aa31LG2G12620 Aethionema arabicum HOM05D006632 ORTHO05D008224 3.1e-77 292.7 297 55.6
A08p12540 Brassica napus HOM05D006632 ORTHO05D008224 5.3e-77 292.0 295 56.3
BraA08t33245Z Brassica rapa HOM05D006632 ORTHO05D008224 5.3e-77 292.0 295 56.3
FAN18G2132 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.2e-76 290.8 299 55.9
HanXRQChr03g0088651 Helianthus annuus HOM05D006632 ORTHO05D008224 1.2e-76 290.8 288 56.6
Sabra03G0077000 Salix brachista HOM05D006632 ORTHO05D008224 3.5e-76 289.3 339 49.9
Lj4g0001078 Lotus japonicus HOM05D006632 ORTHO05D008224 4.5e-76 288.9 299 53.8
Ah.12g056690 Amaranthus hybridus HOM05D006632 ORTHO05D008224 7.7e-76 288.1 296 54.4
Sp7g15070 Schrenkiella parvula HOM05D006632 ORTHO05D008224 7.7e-76 288.1 296 54.4
Aqoxy5G03914 Aquilegia oxysepala HOM05D006632 ORTHO05D008224 1.0e-75 287.7 294 53.4
Thhalv10026162m.g Eutrema salsugineum HOM05D006632 ORTHO05D008224 1.3e-75 287.3 296 55.1
Lalb_Chr05g0225741 Lupinus albus HOM05D006632 ORTHO05D008224 1.3e-75 287.3 297 54.5
BolC8t48376H Brassica oleracea HOM05D006632 ORTHO05D008224 1.7e-75 287.0 295 55.9
CsaV3_3G002820 Cucumis sativus L. HOM05D006632 ORTHO05D008224 1.1e-74 284.3 263 56.7
arahy.Tifrunner.gnm1.ann1.E5X9TE Arachis hypogaea HOM05D006632 ORTHO05D008224 1.5e-74 283.9 297 54.2
EL10Ac5g13049 Beta vulgaris HOM05D006632 ORTHO05D008224 4.2e-74 282.3 294 53.7
CAN.G1227.10 Capsicum annuum HOM05D006632 ORTHO05D008224 4.2e-74 282.3 245 60.4
AUR62039953 Chenopodium quinoa HOM05D006632 ORTHO05D008224 9.4e-74 281.2 293 53.9
arahy.Tifrunner.gnm1.ann1.UQJ0AM Arachis hypogaea HOM05D006632 ORTHO05D008224 1.2e-73 280.8 297 53.9
MD06G1061300 Malus domestica HOM05D006632 ORTHO05D008224 2.1e-73 280.0 300 52.0
THA.LOC104814709 Tarenaya hassleriana HOM05D006632 ORTHO05D008224 2.7e-73 279.6 297 53.5
HPP92_014478 Vanilla planifolia HOM05D006632 ORTHO05D008224 6.1e-73 278.5 296 52.4
AUR62007500 Chenopodium quinoa HOM05D006632 ORTHO05D008224 1.4e-72 277.3 294 54.4
Eucgr.E00435 Eucalyptus grandis HOM05D006632 ORTHO05D008224 1.4e-72 277.3 304 52.3
FAN08G0873 Fragaria x ananassa HOM05D006632 ORTHO05D008224 1.4e-72 277.3 306 53.3
FAN04G0341 Fragaria x ananassa HOM05D006632 ORTHO05D008224 8.8e-72 274.6 306 53.3
FAN13G0450 Fragaria x ananassa HOM05D006632 ORTHO05D008224 4.4e-71 272.3 322 50.6
SGA_v2.0_scaffold120G32870 Striga asiatica HOM05D006632 ORTHO05D008224 4.4e-71 272.3 364 45.9
CDE02G1947 Ceratophyllum demersum HOM05D006632 ORTHO05D008224 2.8e-70 269.6 283 53.4
Os02g0662200 Oryza sativa ssp. japonica HOM05D006632 ORTHO05D008224 3.1e-69 266.2 298 49.0
unitig_27.g25096 Utricularia gibba HOM05D006632 ORTHO05D008224 1.2e-68 264.2 252 54.4
Peaxi162Scf00102g01151 Petunia axillaris HOM05D006632 ORTHO05D008224 2.5e-66 256.5 300 50.3
Zm00001eb249830 Zea mays HOM05D006632 ORTHO05D008224 2.1e-65 253.4 298 47.3
SEGI_31519 Sequoiadendron giganteum HOM05D006632 ORTHO05D008224 3.4e-63 246.1 296 47.0
BcaC07g37993 Brassica carinata HOM05D006632 ORTHO05D008224 7.5e-63 245.0 269 54.3
Sc01g0008570 Simmondsia chinensis HOM05D006632 ORTHO05D008224 6.3e-62 241.9 158 72.8
MD00G1115100 Malus domestica HOM05D006632 ORTHO05D008224 8.3e-62 241.5 313 46.0
Mapoly0121s0036 Marchantia polymorpha HOM05D006632 ORTHO05D008224 1.0e-59 234.6 256 49.2
SMO143G0241 Selaginella moellendorffii HOM05D006632 ORTHO05D008224 1.0e-59 234.6 255 47.1
Hund14588 Selenicereus undatus HOM05D006632 ORTHO05D008224 7.3e-58 228.4 453 36.0
Pp3c24_4050 Physcomitrium patens HOM05D006632 ORTHO05D008224 1.2e-57 227.6 306 44.1
QL12p012693 Quercus lobata HOM05D006632 ORTHO05D008224 8.9e-56 221.5 255 51.8
DCAR_004945 Daucus carota HOM05D006632 ORTHO05D008224 1.2e-55 221.1 300 44.0
Nitab4.5_0017825g0010 Nicotiana tabacum HOM05D006632 ORTHO05D008224 5.4e-53 212.2 256 48.0
CBR_g26463 Chara braunii HOM05D006632 ORTHO05D008224 2.5e-50 203.4 250 44.4
SalBow6G7145 Salvia bowleyana HOM05D006632 ORTHO05D008224 1.7e-46 190.7 223 52.9
Cre07.g338250 Chlamydomonas reinhardtii HOM05D006632 ORTHO05D008224 2.6e-39 166.8 266 35.7
C01p26240 Brassica napus HOM05D006632 ORTHO05D008224 3.4e-39 166.4 135 63.7
BolC1t02568H Brassica oleracea HOM05D006632 ORTHO05D008224 3.4e-39 166.4 135 63.7
Ca_22220_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 2.7e-36 156.8 251 43.4
Dinv39125 Davidia involucrata HOM05D006632 ORTHO05D008224 2.7e-36 156.8 203 49.8
Ca_21955_v3 Cicer arietinum L. HOM05D006632 ORTHO05D008224 3.9e-35 152.9 225 45.3
ATR0564G418 Amborella trichopoda HOM05D006632 ORTHO05D008224 6.8e-32 142.1 231 41.6
PRCOL_00001140 Prasinoderma coloniale HOM05D006632 ORTHO05D008224 1.3e-27 127.9 288 30.2
MCO15G182 Micromonas commoda HOM05D006632 ORTHO05D008224 4.3e-26 122.9 230 35.2
AagrBONN_evm.TU.Sc2ySwM_117.1014 Anthoceros agrestis HOM05D006632 ORTHO05D008224 6.9e-24 115.5 190 38.4
TAR636G0287 Trochodendron aralioides HOM05D006632 ORTHO05D008224 2.6e-23 113.6 99 63.6
BraA01t02010Z Brassica rapa HOM05D006632 ORTHO05D008224 3.2e-21 106.7 125 51.2
Peaxi162Scf00002g00156 Petunia axillaris HOM05D006632 ORTHO05D008224 9.3e-21 105.1 82 63.4
A01p20910 Brassica napus HOM05D006632 ORTHO05D008224 1.2e-20 104.8 125 51.2
Cpa.g.sc276.6 Carica papaya HOM05D006632 ORTHO05D008224 2.1e-20 104.0 108 58.3
Duzib068G0053 Durio zibethinus HOM05D006632 ORTHO05D008224 6.0e-20 102.4 77 66.2
FvH4_5g00080 Fragaria vesca HOM05D011292 ORTHO05D013599 1.3e-19 101.3 101 60.4
DCAR_004944 Daucus carota HOM05D006632 ORTHO05D008224 3.1e-16 90.1 102 54.9
Sabra01G0094400 Salix brachista HOM05D006632 ORTHO05D008224 7.9e-12 75.5 48 70.8
Potri.001G122501 Populus trichocarpa HOM05D006632 ORTHO05D008224 2.0e-07 60.8 102 38.2


User provided reference genes

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