Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.7e-211 739.2 403 100.0
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 9.2e-149 530.8 429 66.9
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 3.4e-135 485.7 455 60.7
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.5e-122 443.0 450 55.1
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 9.6e-122 441.0 414 59.4
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-120 437.2 450 54.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.0e-119 433.3 424 56.1
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 3.8e-118 429.1 450 54.0
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 4.9e-118 428.7 437 55.8
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 8.4e-118 427.9 452 54.0
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.4e-117 427.2 452 54.9
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.4e-117 427.2 449 54.8
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.6e-116 423.7 450 57.6
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.6e-116 423.7 452 53.3
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 2.7e-116 422.9 448 56.7
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.7e-116 422.9 443 54.6
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 4.6e-116 422.2 424 55.9
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 6.0e-116 421.8 358 61.7
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.0e-116 421.8 432 55.8
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.0e-115 421.0 450 54.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.0e-115 419.5 307 67.1
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 3.9e-115 419.1 453 53.2
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-114 417.5 450 53.3
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.1e-114 417.5 341 63.3
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.1e-114 417.5 441 55.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.5e-114 417.2 450 53.6
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.5e-114 417.2 431 54.8
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.5e-114 417.2 339 64.0
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 7.3e-114 414.8 355 62.5
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 7.3e-114 414.8 362 61.0
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.3e-113 414.1 424 53.8
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 2.1e-113 413.3 307 67.8
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.8e-113 412.1 306 67.6
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.8e-113 412.1 306 67.6
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 6.2e-113 411.8 435 53.6
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.2e-113 411.8 308 67.5
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.1e-112 411.0 450 52.9
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 1.1e-112 411.0 307 67.1
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.8e-112 410.2 358 60.1
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.8e-112 410.2 306 66.7
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.4e-112 409.8 450 52.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.4e-112 409.8 364 60.2
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.1e-112 409.5 431 53.4
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.3e-112 408.7 306 67.0
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 5.3e-112 408.7 306 67.3
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 5.3e-112 408.7 450 52.4
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 6.9e-112 408.3 356 62.9
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 6.9e-112 408.3 431 53.4
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 3.4e-111 406.0 299 67.9
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 3.4e-111 406.0 456 52.0
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.5e-111 405.6 435 53.1
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 5.8e-111 405.2 306 66.3
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 9.9e-111 404.4 305 64.9
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 1.7e-110 403.7 450 50.9
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 2.2e-110 403.3 343 62.1
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 2.2e-110 403.3 450 51.8
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 2.2e-110 403.3 301 66.8
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.9e-110 402.9 358 59.8
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 6.4e-110 401.7 433 54.0
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 8.4e-110 401.4 309 66.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 8.4e-110 401.4 354 61.0
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.1e-109 401.0 311 65.3
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.1e-109 401.0 303 66.3
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-109 401.0 309 65.4
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-109 401.0 309 66.3
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 1.4e-109 400.6 306 64.7
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.4e-109 400.6 433 52.9
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.9e-109 400.2 306 65.4
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.4e-109 399.8 306 65.7
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 3.2e-109 399.4 450 51.8
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.2e-109 399.4 354 59.6
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 4.2e-109 399.1 301 67.1
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.4e-109 398.7 475 49.5
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 9.3e-109 397.9 306 65.0
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.3e-109 397.9 451 53.9
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 9.3e-109 397.9 450 51.3
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.2e-108 397.5 306 65.0
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.2e-108 397.5 306 65.4
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.1e-108 396.7 299 66.6
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 3.5e-108 396.0 339 59.9
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 4.6e-108 395.6 306 64.7
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.6e-108 395.6 358 59.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 6.0e-108 395.2 404 55.4
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 7.9e-108 394.8 237 79.3
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 7.9e-108 394.8 470 50.6
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.3e-107 394.0 309 64.7
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.8e-107 393.7 450 51.6
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 3.0e-107 392.9 308 64.9
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 3.9e-107 392.5 358 58.9
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 5.1e-107 392.1 361 59.6
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 8.7e-107 391.3 306 64.4
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 8.7e-107 391.3 306 64.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.1e-106 391.0 307 64.5
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.1e-106 391.0 307 64.5
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-106 391.0 349 59.3
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.1e-106 391.0 236 78.0
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.9e-106 390.2 436 54.6
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.5e-106 389.8 321 61.7
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 5.6e-106 388.7 437 52.4
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.0e-103 380.2 235 75.7
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.6e-103 379.8 306 63.7
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.7e-102 377.1 236 73.3
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 8.4e-102 374.8 352 55.4
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.7e-100 369.8 304 60.5
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.8e-99 367.1 403 51.1
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.1e-98 364.4 280 65.0
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 7.4e-98 361.7 300 60.3
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.7e-97 359.4 322 60.6
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 3.1e-96 356.3 387 52.2
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 6.9e-96 355.1 364 55.8
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 6.5e-94 348.6 377 51.2
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 7.1e-93 345.1 301 58.5
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.3e-91 340.1 200 78.5
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 1.6e-89 334.0 393 48.1
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 8.2e-89 331.6 307 57.3
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.3e-83 314.3 355 47.9
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 7.4e-82 308.5 236 59.7
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 9.1e-80 301.6 225 68.0
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 2.2e-78 297.0 231 58.9
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.1e-77 294.7 231 60.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 3.3e-74 283.1 229 59.4
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.5e-71 272.7 164 77.4
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 7.2e-69 265.4 164 75.0
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.8e-64 250.8 450 39.8
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.3e-62 244.6 435 40.9
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 3.8e-62 243.0 434 41.0
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-47 194.5 177 57.1
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 2.2e-41 174.1 124 68.5
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 5.4e-40 169.5 233 42.5
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 8.0e-36 155.6 160 52.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 1.0e-35 155.2 290 43.4
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.4e-33 146.0 111 57.7
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 9.8e-26 122.1 83 68.7
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.3e-25 121.7 107 60.7
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 3.0e-22 110.5 83 60.2
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.1e-20 104.4 71 71.8
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.8e-18 96.3 66 72.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.7e-15 87.4 67 61.2
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 8.4e-09 65.9 109 43.1
Lsat_1_v5_gn_8_121800 Lactuca sativa HOM05D001816 ORTHO05D002001 8.7e-06 55.8 172 29.7


User provided reference genes

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