Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 9.9e-236 819.7 405 100.0
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 4.0e-192 674.9 404 83.9
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 9.5e-178 627.1 414 75.1
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 5.2e-176 621.3 406 74.9
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 3.4e-175 618.6 414 75.4
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 9.5e-170 600.5 402 73.6
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.8e-168 594.3 371 79.0
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 4.9e-166 588.2 412 71.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.1e-165 587.0 406 71.4
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 7.0e-165 584.3 406 70.7
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 1.5e-159 566.6 401 69.3
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 3.4e-159 565.5 431 67.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 3.4e-159 565.5 401 68.8
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 5.8e-159 564.7 401 69.8
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.7e-158 563.1 405 69.4
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.7e-158 563.1 372 73.9
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 2.2e-158 562.8 381 70.6
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 4.9e-158 561.6 401 68.1
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 6.4e-158 561.2 405 67.9
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 1.4e-157 560.1 401 67.8
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.9e-157 559.7 401 67.8
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.9e-157 559.7 410 68.3
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 4.1e-157 558.5 406 67.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 5.4e-157 558.1 391 69.3
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 5.4e-157 558.1 391 69.3
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.2e-156 557.0 401 67.6
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 2.0e-156 556.2 401 70.6
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.0e-156 556.2 405 69.1
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.0e-156 556.2 379 71.5
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 4.6e-156 555.1 376 70.7
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.3e-155 552.7 387 70.3
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 3.9e-155 552.0 379 69.7
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 3.9e-155 552.0 408 67.6
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 5.0e-155 551.6 398 68.3
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-155 551.2 394 67.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 6.6e-155 551.2 371 70.4
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 8.6e-155 550.8 405 67.9
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 8.6e-155 550.8 371 70.9
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.5e-154 550.1 430 65.6
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 3.3e-154 548.9 397 66.8
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 9.5e-154 547.4 405 67.9
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 9.5e-154 547.4 372 73.1
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 1.2e-153 547.0 409 66.7
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.6e-153 546.6 401 66.8
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 1.6e-153 546.6 396 66.7
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 8.1e-153 544.3 383 68.9
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.8e-152 543.1 383 68.9
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.3e-152 542.7 405 67.2
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 8.9e-152 540.8 410 67.1
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 8.9e-152 540.8 408 65.2
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.2e-151 540.4 404 66.1
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.4e-151 538.5 404 66.3
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 4.4e-151 538.5 404 66.6
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 7.5e-151 537.7 406 65.8
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.7e-150 536.6 404 66.1
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.9e-150 535.8 381 67.2
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 6.4e-150 534.6 404 66.3
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 8.3e-150 534.3 388 66.2
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 2.4e-149 532.7 409 67.0
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 4.1e-149 531.9 371 70.1
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 9.2e-149 530.8 381 68.2
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 9.2e-149 530.8 381 68.2
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 9.2e-149 530.8 371 70.1
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 3.5e-148 528.9 379 68.1
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 3.5e-148 528.9 404 64.1
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 3.5e-148 528.9 406 64.5
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.5e-148 528.9 380 67.1
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 4.6e-148 528.5 380 68.2
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 4.6e-148 528.5 380 68.2
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.0e-148 528.1 380 66.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.3e-147 526.9 380 66.3
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 2.3e-147 526.2 380 66.6
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 3.9e-147 525.4 380 66.8
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 1.9e-146 523.1 403 64.5
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 2.5e-146 522.7 380 67.1
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 2.5e-146 522.7 393 64.9
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.3e-146 522.3 368 69.6
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.3e-146 521.9 392 64.3
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 7.3e-146 521.2 380 66.3
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 7.3e-146 521.2 366 68.3
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 9.5e-146 520.8 370 67.3
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.1e-145 519.6 406 64.5
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 8.1e-145 517.7 380 65.8
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 8.1e-145 517.7 394 63.7
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.4e-144 516.9 379 67.0
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 4.0e-144 515.4 373 66.8
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 2.0e-143 513.1 380 65.3
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 3.4e-143 512.3 394 63.7
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 2.2e-142 509.6 370 65.1
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 6.4e-142 508.1 406 62.6
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 8.4e-142 507.7 394 64.7
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.9e-141 506.5 377 64.2
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 4.6e-140 501.9 378 65.1
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.1e-136 490.7 372 64.2
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 1.4e-136 490.3 406 62.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.4e-136 489.6 385 62.3
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 2.2e-134 483.0 437 55.8
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.4e-133 480.3 392 60.7
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.2e-133 479.2 367 62.1
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.9e-130 469.9 391 60.6
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 1.3e-129 467.2 395 60.8
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 4.0e-128 462.2 394 57.6
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 5.3e-128 461.8 394 57.6
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 2.6e-127 459.5 332 66.3
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.7e-126 456.8 404 57.2
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 1.2e-124 450.7 363 60.1
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 6.0e-124 448.4 411 56.7
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 5.3e-120 435.3 379 56.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 2.8e-113 412.9 406 56.7
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 2.8e-113 412.9 299 67.2
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.2e-113 411.4 289 68.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 1.1e-112 411.0 378 53.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 5.3e-112 408.7 307 65.1
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.7e-110 403.7 600 41.5
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 9.3e-109 397.9 262 73.3
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.9e-108 394.8 383 53.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 1.5e-106 390.6 355 58.6
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 2.5e-106 389.8 256 72.7
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.3e-106 389.4 368 52.2
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 3.7e-105 386.0 384 50.3
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.5e-103 379.0 373 51.7
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.1e-101 374.4 266 65.0
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 4.3e-98 362.5 392 47.4
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.7e-97 360.5 241 70.1
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 3.4e-95 352.8 265 67.2
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 5.9e-95 352.1 247 66.8
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 7.7e-95 351.7 253 64.8
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 8.5e-94 348.2 254 66.5
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 7.2e-93 345.1 246 63.8
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 1.2e-92 344.4 247 63.6
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.9e-91 339.3 383 48.8
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.8e-88 330.5 409 45.5
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 7.2e-85 318.5 250 64.0
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.0e-79 300.4 191 72.8
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.6e-79 300.1 360 44.4
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 1.2e-66 258.1 158 75.9
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.4e-58 229.9 283 49.1
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 6.3e-57 225.7 132 82.6
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.9e-53 214.2 236 51.3
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 2.4e-48 197.2 216 47.2
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 6.4e-41 172.6 106 76.4
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.0e-38 163.7 121 62.8
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 8.1e-36 155.6 129 56.6
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.0e-34 151.0 402 32.1
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 4.4e-34 149.8 174 48.9
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 6.4e-33 146.0 365 31.8
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 1.1e-32 145.2 174 48.3
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 7.6e-26 122.5 273 31.1
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-23 114.8 99 57.6
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 5.1e-22 109.8 318 32.4
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 4.7e-20 103.2 70 64.3
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 2.4e-19 100.9 93 57.0
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 4.4e-18 96.7 93 52.7
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 4.9e-17 93.2 93 51.6
PRCOL_00001266 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 5.4e-16 89.7 378 25.9
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.6e-15 88.2 76 53.9
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 2.9e-09 67.4 52 55.8
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 2.4e-08 64.3 48 52.1
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 3.2e-08 63.9 58 51.7
BcaC06g34436 Brassica carinata HOM05D004508 ORTHO05D005180 4.2e-08 63.5 55 50.9


User provided reference genes

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