Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 0.0e+00 1724.5 882 100.0
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 0.0e+00 1154.4 932 67.1
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 0.0e+00 1139.8 893 67.4
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 0.0e+00 1114.8 886 65.6
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 0.0e+00 1096.3 889 66.9
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 1.9e-279 966.1 827 60.8
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 9.6e-276 953.7 931 54.4
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 6.4e-272 941.0 935 54.0
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 1.1e-271 940.3 932 55.0
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 1.3e-269 933.3 852 60.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 9.6e-268 927.2 865 57.3
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 4.0e-266 921.8 895 56.3
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 1.7e-264 916.4 965 52.8
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 4.9e-264 914.8 774 60.6
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 9.3e-263 910.6 775 61.0
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.2e-262 910.2 792 60.5
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.6e-262 909.8 856 56.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.6e-262 908.3 852 59.3
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 1.1e-260 903.7 848 56.4
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 9.6e-260 900.6 892 55.2
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.3e-259 900.2 844 56.6
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.4e-257 892.1 933 54.1
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 6.5e-256 887.9 754 60.6
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 8.5e-256 887.5 881 56.5
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 2.5e-255 885.9 875 53.5
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 7.9e-254 880.9 776 58.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 1.8e-253 879.8 861 54.1
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 4.3e-252 875.2 839 58.0
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 3.7e-251 872.1 879 53.6
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 4.8e-251 871.7 775 58.1
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 3.1e-250 869.0 893 55.0
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 7.7e-249 864.4 766 58.4
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 7.7e-249 864.4 779 58.0
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 1.7e-248 863.2 832 57.5
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.6e-246 856.7 887 52.4
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.0e-245 854.0 803 55.7
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.1e-244 850.5 813 55.4
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.5e-244 850.1 734 59.3
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 4.4e-244 848.6 766 56.9
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 7.4e-244 847.8 746 58.2
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 6.3e-243 844.7 776 57.0
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.1e-242 844.0 746 58.2
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.5e-241 840.1 834 55.5
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 2.0e-241 839.7 746 57.9
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 2.0e-241 839.7 782 55.4
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 5.9e-241 838.2 792 55.3
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.7e-241 837.8 792 55.3
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.0e-240 837.4 898 51.1
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 3.2e-239 832.4 737 59.2
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 1.4e-237 827.0 780 55.0
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.1e-236 823.9 928 50.1
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.4e-236 822.0 884 51.8
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 4.8e-235 818.5 750 56.4
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.6e-233 813.5 915 51.0
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 2.0e-233 813.1 755 55.8
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 3.5e-233 812.4 774 54.8
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 8.5e-232 807.7 870 52.4
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 3.0e-229 799.3 871 50.5
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 5.7e-228 795.0 806 52.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 6.3e-227 791.6 750 55.1
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.1e-226 790.8 1043 45.0
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 2.4e-226 789.6 743 55.2
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 2.4e-226 789.6 710 57.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 3.1e-226 789.3 747 55.0
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 7.0e-226 788.1 524 74.6
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 4.5e-225 785.4 685 59.0
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.0e-224 784.3 897 50.6
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 2.2e-224 783.1 751 54.3
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 1.1e-223 780.8 792 52.8
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 1.6e-222 776.9 750 54.7
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.0e-221 772.7 739 55.8
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 9.1e-218 761.1 602 64.6
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 1.2e-217 760.8 673 57.4
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 3.0e-213 746.1 556 67.1
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 3.0e-213 746.1 684 56.9
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.4e-212 742.3 835 51.0
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 4.1e-210 735.7 684 56.9
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 4.1e-202 709.1 663 55.8
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 7.0e-202 708.4 533 67.9
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.3e-200 703.4 634 56.9
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 5.6e-199 698.7 768 51.4
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 9.8e-196 688.0 736 51.4
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.2e-188 664.5 564 60.5
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 1.3e-184 651.0 556 61.3
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.9e-184 649.4 725 48.8
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.2e-182 644.4 911 44.6
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 8.1e-182 641.7 531 60.1
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.6e-180 636.7 534 61.2
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.0e-176 623.2 587 54.0
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 5.1e-176 622.5 448 68.3
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.1e-175 621.3 651 50.7
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.9e-175 620.5 844 45.6
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 9.3e-170 601.7 735 46.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 3.7e-158 563.1 509 58.0
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 8.1e-158 562.0 752 45.2
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 9.3e-146 521.9 748 43.3
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 3.2e-138 496.9 336 71.4
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 2.2e-131 474.2 412 59.2
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.1e-127 461.8 720 38.6
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 5.7e-111 406.4 277 73.3
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.3e-91 342.0 479 42.8
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.4e-85 322.0 250 62.4
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.3e-75 288.9 262 59.5
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.8e-72 278.5 297 52.2
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.6e-71 274.6 437 41.2
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.4e-61 241.5 256 53.1
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 8.7e-59 233.0 327 40.4
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 8.1e-57 226.5 245 46.9
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.4e-56 225.7 208 55.3
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-52 211.5 274 42.7
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 8.7e-51 206.5 372 35.8
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 9.0e-48 196.4 184 59.8
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 5.8e-47 193.7 207 47.3
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-43 182.6 130 76.9
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 4.8e-41 174.1 91 83.5
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 7.9e-36 156.8 179 54.7
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 3.0e-35 154.8 117 66.7
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.9e-34 152.1 139 61.2
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 7.4e-34 150.2 102 76.5
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 2.1e-33 148.7 110 61.8
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 1.4e-32 146.0 205 42.0
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.0e-30 139.8 103 62.1
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.2e-28 132.9 78 85.9
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.6e-28 131.0 147 55.8
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.4e-26 123.6 552 23.0
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 8.2e-25 120.2 421 24.9
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 1.1e-24 119.8 367 26.7
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-23 116.3 211 40.8
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 3.8e-22 111.3 547 22.5
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 2.1e-20 105.5 464 24.1
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 3.9e-19 101.3 59 74.6
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.7e-14 85.9 44 84.1
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.2e-12 79.7 123 39.8


User provided reference genes

Program Settings