Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 3115.5 1552 100.0
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 2492.2 1539 82.4
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 2220.7 1556 74.6
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 2136.7 1579 69.9
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1952.9 1542 64.9
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1927.5 1548 64.1
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1891.7 1546 63.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1851.3 1549 62.2
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1825.8 1552 61.4
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1813.9 1547 61.3
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1793.9 1499 62.4
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1793.1 1546 60.7
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1790.8 1579 60.4
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1789.2 1547 60.4
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1784.6 1384 68.7
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1778.5 1541 60.5
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1777.3 1548 60.1
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1776.5 1555 61.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1767.7 1557 59.7
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1765.4 1548 59.9
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1764.6 1563 59.7
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1751.5 1525 60.8
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1739.2 1650 56.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 1738.4 1555 59.4
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1728.0 1582 59.2
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1721.1 1440 62.5
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1715.7 1638 56.5
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1704.1 1557 57.2
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 1703.7 1517 60.1
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1700.3 1556 57.9
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 1696.0 1578 58.0
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1674.1 1555 56.5
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1663.3 1556 56.7
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1657.9 1556 56.7
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1655.6 1564 56.5
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1638.6 1553 56.8
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1635.5 1570 56.6
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1624.4 1568 55.5
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1618.2 1530 55.7
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1617.8 1549 56.2
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1614.7 1516 56.9
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1610.5 1562 55.6
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1605.9 1552 55.9
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1604.7 1562 55.7
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1603.6 1557 55.8
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1601.3 1552 55.5
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1598.9 1547 55.0
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1597.4 1568 54.7
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1594.3 1547 55.3
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1593.9 1551 55.3
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1593.6 1604 54.4
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1591.6 1551 55.0
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1590.9 1545 56.2
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1590.9 1592 54.5
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1588.2 1574 54.5
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1580.5 1561 55.7
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1580.1 1559 55.2
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1575.8 1555 54.7
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1575.1 1543 55.2
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1572.0 1566 55.4
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1571.6 1557 54.7
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1566.2 1561 55.6
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1558.9 1553 54.5
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1543.9 1538 55.1
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1532.7 1548 54.1
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1532.3 1535 53.8
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1529.2 1568 53.5
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1528.8 1548 54.0
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1528.1 1383 59.4
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1520.8 1567 53.9
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1519.2 1558 53.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1516.5 1551 53.6
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1511.5 1543 53.5
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1502.3 1535 53.6
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1500.7 1544 53.6
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1495.7 1546 53.7
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1495.7 1546 53.7
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1494.6 1606 52.1
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1494.6 1545 54.0
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1491.1 1563 53.0
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1488.4 1564 52.9
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1486.1 1565 53.1
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1480.7 1558 53.0
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1476.8 1578 51.7
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1467.6 1549 51.6
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1399.8 1437 53.0
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1392.1 1623 49.6
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1347.0 1375 53.2
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1281.5 1334 53.1
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1277.3 1588 46.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1272.3 1568 48.0
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1267.7 1489 49.3
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1262.3 1165 58.6
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1178.3 1135 57.2
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1144.0 1563 43.2
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 3.9e-304 1048.9 996 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 8.1e-262 908.3 1666 36.6
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 8.5e-227 792.0 912 48.2
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 6.1e-217 759.2 489 81.8
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 7.8e-196 689.1 489 73.0
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.2e-172 612.1 1548 30.7
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 8.4e-158 562.8 1036 35.9
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.0e-147 529.3 687 44.3
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 3.0e-115 421.4 402 58.7
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 2.8e-76 292.0 589 33.1
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 4.1e-64 251.5 186 64.0
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 1.2e-50 206.8 171 62.6
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 6.7e-38 164.5 107 71.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-32 147.1 93 72.0
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 9.3e-32 144.1 91 74.7
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 1.4e-27 130.2 89 62.9
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 2.4e-27 129.4 84 67.9
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 2.9e-25 122.5 81 75.3
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.1e-22 111.7 88 63.6
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.1e-22 111.7 88 63.6
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.5e-18 100.1 62 82.3
Actinidia33727 Actinidia chinensis HOM05D006693 ORTHO05D008092 3.7e-12 79.0 101 47.5
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 7.9e-07 61.2 91 44.0
Sc08g0007060 Simmondsia chinensis HOM05D000836 ORTHO05D000709 1.4e-06 60.5 260 20.8


User provided reference genes

Program Settings