Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 2.9e-216 755.0 396 100.0
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 3.2e-37 160.2 174 57.5
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.1e-32 145.2 169 51.5
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 2.2e-30 137.5 180 50.0
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.1e-29 135.2 167 50.9
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 1.9e-29 134.4 168 51.2
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 1.9e-29 134.4 155 54.8
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.9e-29 134.4 155 54.8
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.5e-29 132.9 153 54.9
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 2.7e-28 130.6 175 49.7
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.7e-28 130.6 151 51.0
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.7e-28 130.6 155 52.9
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 6.1e-28 129.4 168 49.4
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 6.1e-28 129.4 168 49.4
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 6.1e-28 129.4 169 48.5
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.1e-28 129.4 157 51.6
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 7.9e-28 129.0 168 51.8
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-27 128.6 153 54.9
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.0e-27 128.6 153 54.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 3.0e-27 127.1 154 50.6
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 3.9e-27 126.7 165 50.9
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 3.9e-27 126.7 167 51.5
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 5.1e-27 126.3 160 52.5
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 5.1e-27 126.3 154 53.9
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 8.7e-27 125.6 194 44.8
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.1e-26 125.2 145 53.1
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 2.5e-26 124.0 145 51.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 2.5e-26 124.0 180 45.0
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 2.5e-26 124.0 153 53.6
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 3.3e-26 123.6 206 43.2
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 3.3e-26 123.6 170 51.2
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.3e-26 123.2 181 48.6
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.7e-26 122.9 166 49.4
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 7.4e-26 122.5 170 45.9
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 7.4e-26 122.5 191 45.0
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-26 122.1 153 49.0
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 9.7e-26 122.1 153 49.0
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 9.7e-26 122.1 174 46.0
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-25 121.7 153 49.0
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.6e-25 121.3 176 45.5
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 2.8e-25 120.6 153 48.4
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 3.7e-25 120.2 170 46.5
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 4.8e-25 119.8 153 47.1
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 6.3e-25 119.4 177 46.3
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 3.1e-24 117.1 157 50.3
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.1e-24 116.7 177 44.1
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 6.9e-24 115.9 174 46.0
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 9.0e-24 115.5 154 50.6
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 9.0e-24 115.5 174 45.4
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 9.0e-24 115.5 155 47.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 9.0e-24 115.5 170 46.5
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.2e-23 115.2 157 45.9
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.2e-23 115.2 157 45.9
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 1.5e-23 114.8 170 49.4
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.6e-23 114.0 160 46.2
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 3.4e-23 113.6 157 45.9
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 3.4e-23 113.6 146 50.7
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 4.5e-23 113.2 165 47.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 4.5e-23 113.2 161 47.2
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 5.9e-23 112.8 161 46.6
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-22 111.7 170 44.1
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 1.3e-22 111.7 170 44.1
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.8e-22 110.2 163 43.6
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 3.8e-22 110.2 149 50.3
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 6.5e-22 109.4 186 44.1
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 6.5e-22 109.4 151 49.0
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 6.5e-22 109.4 157 45.9
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.4e-21 108.2 147 46.9
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.9e-21 107.8 157 43.9
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 4.2e-21 106.7 150 47.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 5.5e-21 106.3 178 46.1
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 5.5e-21 106.3 175 45.7
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 7.2e-21 105.9 179 45.8
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.4e-21 105.5 178 45.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.2e-20 105.1 179 41.3
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.6e-20 104.8 145 50.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 2.1e-20 104.4 135 48.1
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 3.6e-20 103.6 157 42.0
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 7.9e-20 102.4 163 44.2
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 1.0e-19 102.1 173 44.5
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.8e-19 101.3 171 40.9
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 2.3e-19 100.9 187 42.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 3.0e-19 100.5 193 42.5
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 3.0e-19 100.5 193 42.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 3.9e-19 100.1 184 44.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 5.1e-19 99.8 175 44.6
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 5.1e-19 99.8 181 39.8
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 5.1e-19 99.8 174 44.8
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 6.7e-19 99.4 186 43.5
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.1e-18 98.6 112 56.2
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 2.5e-18 97.4 174 42.5
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 4.3e-18 96.7 229 38.9
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 4.3e-18 96.7 185 42.2
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 9.7e-18 95.5 186 43.0
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 1.3e-17 95.1 247 37.7
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 2.2e-17 94.4 164 45.7
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.7e-17 93.6 152 44.1
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.7e-17 93.6 169 42.0
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 4.8e-17 93.2 152 44.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 4.8e-17 93.2 152 44.1
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.8e-17 93.2 137 46.0
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.3e-17 92.8 188 42.0
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.1e-16 92.0 166 45.2
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.4e-16 90.9 181 42.0
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 3.1e-16 90.5 181 39.8
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 5.3e-16 89.7 149 47.7
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.9e-16 89.4 151 43.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 6.9e-16 89.4 155 41.9
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 9.1e-16 89.0 151 43.0
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 9.1e-16 89.0 171 40.4
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 1.5e-15 88.2 180 39.4
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 1.5e-15 88.2 170 40.6
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.0e-15 87.8 119 47.9
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 7.7e-15 85.9 139 43.9
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.7e-14 84.7 170 40.0
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.2e-14 84.3 161 42.2
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 3.8e-14 83.6 154 40.3
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 2.5e-13 80.9 168 35.1
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 9.4e-13 79.0 173 40.5
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 9.4e-13 79.0 167 37.7
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 2.7e-12 77.4 153 41.2
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.7e-12 77.4 78 61.5
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 3.6e-12 77.0 163 33.7
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 4.7e-12 76.6 160 39.4
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.0e-11 75.5 151 39.7
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 3.0e-11 73.9 151 40.4
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.1e-10 72.0 82 54.9
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.4e-10 69.3 118 44.1
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-09 68.2 91 44.0
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-09 68.2 91 44.0
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-09 68.2 91 44.0
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.8e-09 67.4 93 49.5
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.8e-09 67.4 93 49.5
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 6.3e-09 66.2 146 37.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 8.2e-09 65.9 112 43.8
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.1e-08 63.9 96 46.9
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 7.0e-08 62.8 107 39.3
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.6e-07 60.8 118 42.4
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 2.6e-07 60.8 118 42.4
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.6e-07 60.8 60 56.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.5e-07 60.1 162 31.5
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.0e-06 58.9 124 37.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.7e-06 58.2 123 38.2
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 2.9e-06 57.4 164 32.3


User provided reference genes

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