Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 0.0e+00 1696.4 839 100.0
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 1.9e-164 583.9 725 49.5
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.5e-156 557.8 827 44.3
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.1e-143 515.0 376 70.7
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 2.4e-114 417.5 387 55.0
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-105 388.7 516 45.3
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 4.5e-105 386.7 846 34.4
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 1.0e-101 375.6 855 34.9
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 1.1e-100 372.1 506 43.5
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 8.1e-99 365.9 879 33.8
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 1.1e-98 365.5 402 48.5
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 4.9e-96 356.7 411 49.1
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 9.3e-95 352.4 848 32.1
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 9.3e-95 352.4 430 47.2
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 1.9e-92 344.7 612 35.8
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 4.3e-92 343.6 411 46.2
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 7.4e-92 342.8 412 46.1
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.4e-90 338.6 411 46.5
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 3.1e-90 337.4 397 46.3
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 4.5e-89 333.6 411 45.0
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 1.0e-88 332.4 503 41.9
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 2.9e-88 330.9 368 48.9
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 3.8e-88 330.5 424 44.6
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 4.9e-88 330.1 390 49.0
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 4.9e-88 330.1 380 46.8
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 1.9e-87 328.2 409 45.2
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 5.5e-87 326.6 360 47.8
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 5.5e-87 326.6 613 33.6
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 1.9e-84 318.2 678 34.4
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 1.9e-84 318.2 665 34.1
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.6e-83 315.1 526 39.0
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.6e-81 307.8 384 44.8
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 1.3e-80 305.4 440 41.6
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 6.5e-80 303.1 364 48.1
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.2e-79 300.4 393 43.3
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 7.2e-79 299.7 440 41.4
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 2.7e-78 297.7 463 40.2
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 3.6e-78 297.4 458 40.2
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 6.1e-78 296.6 360 46.1
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 5.1e-77 293.5 388 44.8
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 5.7e-76 290.0 374 44.1
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-74 285.8 390 40.5
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 2.4e-74 284.6 396 40.4
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 2.6e-73 281.2 362 42.5
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.3e-72 278.9 784 31.0
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 2.9e-72 277.7 453 38.2
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.2e-71 273.9 376 39.6
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.6e-70 271.9 611 34.0
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.0e-69 267.7 376 39.1
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 6.7e-69 266.5 255 52.5
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 1.1e-68 265.8 532 35.5
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 2.8e-67 261.2 255 51.8
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.4e-66 258.8 265 52.1
vmacro13880 Vaccinium macrocarpon HOM05D063747 ORTHO05D006854 2.4e-66 258.1 367 47.1
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 1.0e-64 252.7 425 38.1
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 2.2e-64 251.5 273 49.5
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 2.5e-63 248.1 428 38.1
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.6e-62 245.4 273 48.0
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 2.7e-62 244.6 265 47.2
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.8e-61 241.9 356 42.1
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 2.0e-60 238.4 343 41.4
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 2.8e-59 234.6 299 45.8
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 6.3e-59 233.4 551 31.2
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 9.1e-58 229.6 274 48.5
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 1.7e-56 225.3 258 48.8
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.7e-56 225.3 272 46.3
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 2.7e-54 218.0 488 33.2
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 3.6e-54 217.6 275 45.5
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 2.2e-51 208.4 457 33.0
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 2.5e-47 194.9 249 42.2
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 7.2e-47 193.4 231 45.0
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.4e-44 184.1 341 36.4
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.5e-44 183.3 201 47.8
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.8e-42 178.7 392 32.7
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 2.7e-41 174.9 224 44.2
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 4.5e-41 174.1 200 46.5
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 2.9e-40 171.4 273 38.5
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 3.8e-40 171.0 255 38.8
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 7.2e-39 166.8 130 60.8
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 8.9e-37 159.8 238 40.3
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 2.6e-36 158.3 286 34.6
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.8e-34 152.1 193 41.5
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.8e-34 152.1 205 41.0
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 4.5e-33 147.5 155 51.0
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-30 139.4 115 60.0
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 6.1e-30 137.1 214 36.9
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.4e-28 131.0 172 42.4
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.8e-28 130.6 162 43.2
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.9e-27 128.3 162 42.6
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.9e-27 127.5 172 41.9
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 1.2e-25 122.9 71 83.1
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-25 122.9 107 53.3
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-25 122.9 107 53.3
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.2e-25 122.9 101 58.4
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.8e-25 120.2 107 52.3
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.6e-24 117.1 120 49.2
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 1.5e-23 115.9 211 35.5
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.2e-22 112.8 245 32.7
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 2.8e-22 111.7 157 42.0
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 1.4e-21 109.4 157 40.1
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.4e-20 104.8 115 51.3
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 4.1e-18 97.8 128 42.2
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 4.1e-18 97.8 128 40.6
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 5.4e-18 97.4 155 39.4
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 7.1e-18 97.1 128 41.4
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 1.6e-17 95.9 149 39.6
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 1.6e-17 95.9 157 36.9
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 6.0e-17 94.0 100 50.0
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 5.1e-16 90.9 108 45.4
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.1e-15 89.7 158 37.3
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 3.3e-15 88.2 198 33.8
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 4.3e-15 87.8 198 33.8
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 7.3e-15 87.0 148 38.5
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 2.8e-14 85.1 156 35.9
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.6e-14 84.7 76 55.3
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 4.7e-14 84.3 71 57.7
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 6.2e-14 84.0 106 44.3
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 1.4e-13 82.8 91 48.4
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 4.4e-12 77.8 194 30.4
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 9.9e-12 76.6 114 36.8
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 6.4e-11 73.9 65 56.9
HanXRQChr03g0083731 Helianthus annuus HOM05D005777 ORTHO05D006854 1.3e-08 66.2 91 39.6
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 6.6e-08 63.9 35 71.4
SHI06954 Sapria himalayana HOM05D000023 ORTHO05D000014 2.5e-07 62.0 106 37.7
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 4.3e-07 61.2 31 83.9
PSO063G6181 Papaver somniferum HOM05D005777 ORTHO05D006854 5.6e-07 60.8 44 59.1
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-06 59.7 60 53.3


User provided reference genes

Program Settings