Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 1.3e-26 122.9 89 100.0
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 1.0e-20 103.2 89 79.8
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 4.0e-20 101.3 89 62.9
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 8.8e-20 100.1 90 66.7
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 4.1e-17 91.3 89 77.5
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 5.4e-17 90.9 87 57.5
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 9.1e-17 90.1 87 60.9
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 9.1e-17 90.1 87 79.3
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 9.1e-17 90.1 87 79.3
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 9.1e-17 90.1 90 58.9
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 1.6e-16 89.4 89 60.7
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 1.6e-16 89.4 89 60.7
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 1.6e-16 89.4 89 62.9
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 2.0e-16 89.0 89 57.3
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 3.5e-16 88.2 90 80.0
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 1.3e-15 86.3 89 84.3
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 2.3e-15 85.5 90 55.6
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 2.9e-15 85.1 86 80.2
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 1.1e-14 83.2 85 81.2
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 1.1e-14 83.2 86 59.3
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 1.1e-14 83.2 86 59.3
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 1.5e-14 82.8 87 52.9
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 1.9e-14 82.4 89 82.0
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 3.3e-14 81.6 86 77.9
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 4.2e-14 81.3 87 56.3
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 7.2e-14 80.5 88 52.3
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 9.5e-14 80.1 79 57.0
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 9.5e-14 80.1 89 55.1
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 2.8e-13 78.6 89 76.4
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 2.8e-13 78.6 86 52.3
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 4.7e-13 77.8 88 53.4
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 6.1e-13 77.4 86 52.3
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 6.8e-12 73.9 68 94.1
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 8.9e-12 73.6 87 49.4
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 8.9e-12 73.6 83 75.9
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 2.6e-11 72.0 87 62.1
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 2.6e-11 72.0 89 77.5
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 5.7e-11 70.9 80 51.2
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 1.3e-10 69.7 88 76.1
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 1.3e-10 69.7 88 76.1
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 1.7e-10 69.3 91 46.2
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 2.8e-10 68.6 86 46.5
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 3.7e-10 68.2 87 63.2
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 6.3e-10 67.4 83 72.3
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 6.3e-10 67.4 85 71.8
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 6.3e-10 67.4 66 68.2
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 6.3e-10 67.4 86 53.5
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 1.8e-09 65.9 87 43.7
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 2.4e-09 65.5 84 73.8
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 2.4e-09 65.5 84 73.8
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 2.4e-09 65.5 87 60.9
C06p32780 Brassica napus HOM05D007599 ORTHO05D009548 1.2e-08 63.2 91 68.1
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 1.2e-08 63.2 82 73.2
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 2.0e-08 62.4 86 43.0
BcaNung06629 Brassica carinata HOM05D007599 ORTHO05D009548 2.0e-08 62.4 88 67.0
Thecc.03G216000 Theobroma cacao HOM05D007599 ORTHO05D009548 2.0e-08 62.4 89 68.5
BcaB02g07013 Brassica carinata HOM05D007599 ORTHO05D009548 3.5e-08 61.6 89 66.3
Eucgr.L00349 Eucalyptus grandis HOM05D007599 ORTHO05D009548 4.5e-08 61.2 89 69.7
BolC6t38400H Brassica oleracea HOM05D007599 ORTHO05D009548 5.9e-08 60.8 91 67.0
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 5.9e-08 60.8 120 35.8
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 7.8e-08 60.5 87 57.5
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.0e-07 60.1 111 36.0
A07p29010 Brassica napus HOM05D007599 ORTHO05D009548 2.3e-07 58.9 90 66.7
BraA07t30541Z Brassica rapa HOM05D007599 ORTHO05D009548 2.3e-07 58.9 90 66.7
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 2.3e-07 58.9 91 53.8
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 1.5e-06 56.2 46 65.2
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 7.3e-06 53.9 87 67.8


User provided reference genes

Program Settings