Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0074100 Rhododendron simsii HOM05D001069 ORTHO05D007586 2.1e-62 242.3 127 100.0
CSS0013670 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.9e-56 221.9 127 89.8
CSS0018717 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D007586 2.9e-56 221.9 127 89.8
CiPaw.07G068400 Carya illinoinensis HOM05D001069 ORTHO05D007586 8.4e-56 220.3 127 88.2
Manes.09G151800 Manihot esculenta HOM05D001069 ORTHO05D007586 1.1e-55 219.9 127 89.8
Haze_04370 Corylus avellana HOM05D001069 ORTHO05D007586 3.2e-55 218.4 127 89.0
Manes.08G135700 Manihot esculenta HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 89.8
Prupe.6G344500 Prunus persica HOM05D001069 ORTHO05D007586 7.1e-55 217.2 127 88.2
CiPaw.08G122900 Carya illinoinensis HOM05D001069 ORTHO05D007586 9.2e-55 216.9 127 87.4
Nn1g02583 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 86.6
GSVIVG01036275001 Vitis vinifera HOM05D001069 ORTHO05D007586 1.2e-54 216.5 127 88.2
Thecc.05G281200 Theobroma cacao HOM05D001069 ORTHO05D007586 1.6e-54 216.1 128 89.1
Cfa006409 Carpinus fangiana HOM05D001069 ORTHO05D001549 3.5e-54 214.9 124 89.5
Lalb_Chr21g0311011 Lupinus albus HOM05D001069 ORTHO05D007586 4.6e-54 214.5 127 85.8
Duzib128G0644 Durio zibethinus HOM05D001069 ORTHO05D007586 7.8e-54 213.8 128 87.5
Actinidia32808 Actinidia chinensis HOM05D001069 ORTHO05D007586 1.0e-53 213.4 127 86.6
Gohir.D13G107700 Gossypium hirsutum HOM05D001069 ORTHO05D007586 1.0e-53 213.4 128 88.3
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.0e-53 213.4 126 85.7
MD04G1225700 Malus domestica HOM05D001069 ORTHO05D007586 1.3e-53 213.0 127 87.4
MD12G1242900 Malus domestica HOM05D001069 ORTHO05D007586 1.7e-53 212.6 127 86.6
QL03p027238 Quercus lobata HOM05D001069 ORTHO05D007586 3.0e-53 211.8 126 86.5
Dinv20292 Davidia involucrata HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 86.6
Eucgr.H04324 Eucalyptus grandis HOM05D001069 ORTHO05D007586 3.9e-53 211.5 127 85.0
Gohir.A13G104300 Gossypium hirsutum HOM05D001069 ORTHO05D007586 3.9e-53 211.5 128 86.7
arahy.Tifrunner.gnm1.ann1.SY74BB Arachis hypogaea HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 85.0
VMungo0720G0790 Vigna mungo HOM05D001069 ORTHO05D007586 5.1e-53 211.1 127 85.0
Glyma.20G225500 Glycine max HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 84.3
Gorai.013G120600 Gossypium raimondii HOM05D001069 ORTHO05D007586 6.6e-53 210.7 123 88.6
Psat6g145040 Pisum sativum HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 85.0
RcHm_v2.0_Chr3g0450701 Rosa chinensis HOM05D001069 ORTHO05D007586 6.6e-53 210.7 127 84.3
Duzib177G1121 Durio zibethinus HOM05D001069 ORTHO05D007586 8.7e-53 210.3 128 86.7
Phvul.007G187900 Phaseolus vulgaris HOM05D001069 ORTHO05D007586 8.7e-53 210.3 127 86.6
Medtr1g080770 Medicago truncatula HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 85.0
Sed0025346 Sechium edule HOM05D001069 ORTHO05D007586 1.1e-52 209.9 127 82.7
MELO3C004390.2 Cucumis melo HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 82.7
FAN09G0270 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 84.3
Potri.005G054500 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.5e-52 209.5 127 85.0
FvH4_6g02700 Fragaria vesca HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 83.5
FAN14G5212 Fragaria x ananassa HOM05D001069 ORTHO05D007586 1.9e-52 209.1 127 83.5
MSTRG.20449 Avicennia marina HOM05D001069 ORTHO05D007586 2.5e-52 208.8 129 85.3
CANSAT54G2612 Cannabis sativa HOM05D001069 ORTHO05D007586 2.5e-52 208.8 125 85.6
Glyma.10G162900 Glycine max HOM05D001069 ORTHO05D007586 2.5e-52 208.8 127 84.3
FAN02G3324 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 84.3
FAN05G3732 Fragaria x ananassa HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 84.3
TPR.G12907 Trifolium pratense HOM05D001069 ORTHO05D007586 3.3e-52 208.4 127 84.3
arahy.Tifrunner.gnm1.ann1.AYUH3A Arachis hypogaea HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 84.3
PGR004G2600 Punica granatum HOM05D001069 ORTHO05D007586 4.3e-52 208.0 127 84.3
Nitab4.5_0001592g0010 Nicotiana tabacum HOM05D001069 ORTHO05D007586 5.6e-52 207.6 129 85.3
Oeu002656.1 Olea europaea HOM05D001069 ORTHO05D007586 5.6e-52 207.6 129 84.5
FAN14G1639 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 82.7
FAN14G4385 Fragaria x ananassa HOM05D001069 ORTHO05D007586 7.3e-52 207.2 127 82.7
Lalb_Chr06g0168091 Lupinus albus HOM05D001069 ORTHO05D007586 9.6e-52 206.8 127 82.7
Nitab4.5_0008996g0040 Nicotiana tabacum HOM05D001069 ORTHO05D007586 1.2e-51 206.5 129 84.5
Sabra05G0047400 Salix brachista HOM05D001069 ORTHO05D001549 1.2e-51 206.5 127 84.3
Nn3g19512 Nelumbo nucifera HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 81.9
Potri.013G042100 Populus trichocarpa HOM05D001069 ORTHO05D007586 1.6e-51 206.1 127 83.5
Atru.chr2.835 Acer truncatum HOM05D001069 ORTHO05D007586 2.1e-51 205.7 126 82.5
Lj5g0026442 Lotus japonicus HOM05D001069 ORTHO05D007586 2.1e-51 205.7 125 82.4
Peaxi162Scf00282g00417 Petunia axillaris HOM05D001069 ORTHO05D007586 2.8e-51 205.3 129 83.7
ECA233G1896 Erigeron canadensis HOM05D000316 ORTHO05D000374 3.6e-51 204.9 126 84.9
SGA_v2.0_scaffold5G02970 Striga asiatica HOM05D001069 ORTHO05D007586 4.7e-51 204.5 129 82.9
DCAR_006651 Daucus carota HOM05D001069 ORTHO05D007586 6.2e-51 204.1 128 85.2
COL.COLO4_15368 Corchorus olitorius HOM05D001069 ORTHO05D007586 1.1e-50 203.4 123 85.4
ClCG02G016730 Citrullus lanatus HOM05D001069 ORTHO05D007586 2.4e-50 202.2 124 82.3
Aqoxy2G00949 Aquilegia oxysepala HOM05D001069 ORTHO05D007586 3.1e-50 201.8 126 80.2
Ca_10042_v3 Cicer arietinum L. HOM05D001069 ORTHO05D007586 3.1e-50 201.8 124 83.1
Migut.B01094 Erythranthe guttata HOM05D001069 ORTHO05D007586 5.2e-50 201.1 129 82.2
THA.LOC104823751 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 6.9e-50 200.7 127 81.9
CAN.G134.94 Capsicum annuum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 122 84.4
HanXRQChr16g0514711 Helianthus annuus HOM05D001069 ORTHO05D007586 1.5e-49 199.5 126 81.7
PSO210G4375 Papaver somniferum HOM05D001069 ORTHO05D007586 1.5e-49 199.5 126 81.7
PSO832G3124 Papaver somniferum HOM05D001069 ORTHO05D007586 5.8e-49 197.6 126 81.0
CsaV3_2G004010 Cucumis sativus L. HOM05D001069 ORTHO05D007586 7.6e-49 197.2 127 79.5
Sc09g0003960 Simmondsia chinensis HOM05D001069 ORTHO05D007586 9.9e-49 196.8 127 79.5
AUR62004967 Chenopodium quinoa HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 81.9
Cc02_g30720 Coffea canephora HOM05D001069 ORTHO05D007586 1.7e-48 196.1 129 79.8
THA.LOC104805822 Tarenaya hassleriana HOM05D001069 ORTHO05D007586 1.7e-48 196.1 127 80.3
AUR62000994 Chenopodium quinoa HOM05D001069 ORTHO05D007586 2.2e-48 195.7 127 81.1
Os03g0628900 Oryza sativa ssp. japonica HOM05D001069 ORTHO05D007586 2.2e-48 195.7 127 77.2
Sed0020567 Sechium edule HOM05D001069 ORTHO05D007586 2.9e-48 195.3 127 77.2
CDE06G2591 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.9e-48 194.5 127 78.7
unitig_52.g17389 Utricularia gibba HOM05D001069 ORTHO05D007586 6.4e-48 194.1 122 82.8
Hund22103 Selenicereus undatus HOM05D001069 ORTHO05D007586 2.4e-47 192.2 124 80.6
EL10Ac4g09163 Beta vulgaris HOM05D001069 ORTHO05D007586 5.4e-47 191.0 127 79.5
Ciclev10029576m.g Citrus clementina HOM05D001069 ORTHO05D007586 5.4e-47 191.0 126 77.0
TWI12G0612 Tripterygium wilfordii HOM05D001069 ORTHO05D007586 7.1e-47 190.7 127 77.2
BcaB07g34137 Brassica carinata HOM05D001069 ORTHO05D007586 1.0e-45 186.8 130 77.7
A06p05680 Brassica napus HOM05D001069 ORTHO05D007586 3.9e-45 184.9 130 76.9
CARHR008700 Cardamine hirsuta HOM05D001069 ORTHO05D007586 3.9e-45 184.9 126 74.6
C05p06850 Brassica napus HOM05D001069 ORTHO05D007586 6.6e-45 184.1 125 76.0
BcaNung06267 Brassica carinata HOM05D001069 ORTHO05D007586 8.7e-45 183.7 131 74.0
Thhalv10009095m.g Eutrema salsugineum HOM05D001069 ORTHO05D007586 1.1e-44 183.3 131 76.3
A08p34980 Brassica napus HOM05D001069 ORTHO05D007586 1.5e-44 183.0 122 77.0
BraA08t35409Z Brassica rapa HOM05D001069 ORTHO05D007586 1.5e-44 183.0 122 77.0
BcaC07g38446 Brassica carinata HOM05D001069 ORTHO05D007586 2.5e-44 182.2 131 73.3
C08p12160 Brassica napus HOM05D001069 ORTHO05D007586 2.5e-44 182.2 131 73.3
Sp1g07420 Schrenkiella parvula HOM05D001069 ORTHO05D007586 2.5e-44 182.2 131 74.8
AT1G08780 Arabidopsis thaliana HOM05D001069 ORTHO05D007586 7.3e-44 180.6 130 75.4
BolC5t29444H Brassica oleracea HOM05D001069 ORTHO05D007586 2.1e-43 179.1 118 78.0
AL1G19210 Arabidopsis lyrata HOM05D001069 ORTHO05D007586 2.8e-43 178.7 130 74.6
Aa31sc20G40 Aethionema arabicum HOM05D001069 ORTHO05D007586 3.6e-43 178.3 125 75.2
BraA06t23778Z Brassica rapa HOM05D001069 ORTHO05D007586 3.6e-43 178.3 118 78.0
HanXRQChr17g0559331 Helianthus annuus HOM05D001069 ORTHO05D007586 4.8e-43 177.9 127 75.6
ATR0665G433 Amborella trichopoda HOM05D001069 ORTHO05D007586 8.1e-43 177.2 127 70.9
Carub.0001s0812 Capsella rubella HOM05D001069 ORTHO05D007586 8.1e-43 177.2 118 78.0
PGSC0003DMG401019457 Solanum tuberosum HOM05D001069 ORTHO05D007586 1.8e-42 176.0 129 75.2
MBI04_g44868_MAGBIO Magnolia biondii HOM05D001069 ORTHO05D007586 3.1e-42 175.3 127 73.2
Solyc01g097300.4 Solanum lycopersicum HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 75.2
Sopen01g040970 Solanum pennellii HOM05D001069 ORTHO05D007586 5.3e-42 174.5 129 75.2
HPP92_026288 Vanilla planifolia HOM05D001069 ORTHO05D007586 1.2e-41 173.3 127 70.9
CDE07G0518 Ceratophyllum demersum HOM05D001069 ORTHO05D007586 4.5e-41 171.4 127 71.7
Zm00001eb051110 Zea mays HOM05D001069 ORTHO05D007586 2.9e-40 168.7 127 68.5
BolC8t48854H Brassica oleracea HOM05D001069 ORTHO05D007586 1.1e-39 166.8 147 62.6
Zm00001eb218870 Zea mays HOM05D001069 ORTHO05D007586 7.1e-39 164.1 127 66.9
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 5.1e-37 157.9 154 59.7
vmacro13808 Vaccinium macrocarpon HOM05D001069 ORTHO05D007586 5.6e-36 154.5 87 92.0
Pp3c16_6640 Physcomitrium patens HOM05D001069 ORTHO05D007586 9.6e-36 153.7 127 64.6
AagrBONN_evm.TU.Sc2ySwM_369.398 Anthoceros agrestis HOM05D001069 ORTHO05D007586 3.1e-34 148.7 127 62.2
CBR_g8595 Chara braunii HOM05D001069 ORTHO05D007586 3.1e-34 148.7 127 60.6
arahy.Tifrunner.gnm1.ann1.VQ2WN5 Arachis hypogaea HOM05D001069 ORTHO05D007586 2.9e-32 142.1 86 82.6
Mapoly0094s0008 Marchantia polymorpha HOM05D001069 ORTHO05D007586 4.9e-32 141.4 127 58.3
Sabra13G0038700 Salix brachista HOM05D001069 ORTHO05D007586 1.6e-30 136.3 88 80.7
Lsat_1_v5_gn_5_68360 Lactuca sativa HOM05D001069 ORTHO05D007586 1.0e-29 133.7 87 81.6
SMO356G0364 Selaginella moellendorffii HOM05D001069 ORTHO05D007586 2.3e-29 132.5 133 55.6
SHI18420 Sapria himalayana HOM05D001069 ORTHO05D007586 4.0e-26 121.7 87 70.1
MCO16G237 Micromonas commoda HOM05D001069 ORTHO05D007586 1.3e-21 106.7 120 46.7
TAR365G0807 Trochodendron aralioides HOM05D001069 ORTHO05D007586 1.5e-17 93.2 61 77.0
Cre16.g671750 Chlamydomonas reinhardtii HOM05D001069 ORTHO05D007586 1.0e-16 90.5 121 43.8
PRCOL_00003582 Prasinoderma coloniale HOM05D001069 ORTHO05D007586 1.1e-15 87.0 121 42.1
arahy.Tifrunner.gnm1.ann1.X5I3PL Arachis hypogaea HOM05D001069 ORTHO05D007586 1.9e-12 76.3 46 84.8
arahy.Tifrunner.gnm1.ann1.JAH3YR Arachis hypogaea HOM05D001069 ORTHO05D007586 2.5e-12 75.9 40 90.0
Sabra13G0038600 Salix brachista HOM05D000002 ORTHO05D000001 4.3e-12 75.1 55 72.7
TAR633G2811 Trochodendron aralioides HOM05D001069 ORTHO05D007586 5.9e-09 64.7 31 96.8
arahy.Tifrunner.gnm1.ann1.VDJK8S Arachis hypogaea HOM05D001069 ORTHO05D007586 2.9e-08 62.4 50 64.0
SHI18422 Sapria himalayana HOM05D001069 ORTHO05D007586 6.5e-08 61.2 41 70.7


User provided reference genes

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