Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0063400 Rhododendron simsii HOM05D018771 ORTHO05D000521 7.8e-70 266.9 127 100.0
Rhsim01G0070300 Rhododendron simsii HOM05D000007 ORTHO05D000521 2.5e-28 129.0 115 56.5
Rhsim07G0064700 Rhododendron simsii HOM05D000007 ORTHO05D000521 3.3e-28 128.6 93 64.5
Rhsim07G0064600 Rhododendron simsii HOM05D000007 ORTHO05D000521 7.4e-28 127.5 93 66.7
Rhsim07G0064500 Rhododendron simsii HOM05D000007 ORTHO05D000521 5.8e-25 117.9 102 57.8
Rhsim01G0070200 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.7e-24 116.3 104 59.6
Rhsim01G0071900 Rhododendron simsii HOM05D000007 ORTHO05D000521 2.2e-24 115.9 115 53.0
Rhsim07G0064300 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.9e-23 112.8 91 61.5
Rhsim07G0064100 Rhododendron simsii HOM05D000007 ORTHO05D000521 9.3e-23 110.5 93 57.0
Rhsim07G0064200 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.2e-22 110.2 91 58.2
Rhsim07G0063800 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.6e-22 109.8 90 61.1
Hma1.2p1_1251F.1_g270330 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.0e-21 107.1 93 55.9
Dinv34353 Davidia involucrata HOM05D000007 ORTHO05D000521 9.7e-20 100.5 102 49.0
Prupe.3G112400 Prunus persica HOM05D000007 ORTHO05D000521 4.8e-19 98.2 111 47.7
RcHm_v2.0_Chr2g0131131 Rosa chinensis HOM05D000007 ORTHO05D000521 1.1e-18 97.1 105 45.7
MD01G1181800 Malus domestica HOM05D000007 ORTHO05D000521 3.1e-18 95.5 121 43.0
Prupe.3G111700 Prunus persica HOM05D000007 ORTHO05D000521 5.3e-18 94.7 111 45.9
Hma1.2p1_0270F.1_g108160 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 5.9e-17 91.3 91 48.4
Rhsim01G0071800 Rhododendron simsii HOM05D000007 ORTHO05D000521 5.9e-17 91.3 132 44.7
Haze_08061 Corylus avellana HOM05D000007 ORTHO05D000521 1.0e-16 90.5 102 46.1
FAN05G3966 Fragaria x ananassa HOM05D018771 ORTHO05D000521 1.7e-16 89.7 91 44.0
Dinv34341 Davidia involucrata HOM05D000007 ORTHO05D000521 2.9e-16 89.0 91 48.4
FAN14G1599 Fragaria x ananassa HOM05D018771 ORTHO05D000521 2.9e-16 89.0 102 43.1
Hma1.2p1_1251F.1_g270320 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.9e-16 89.0 96 50.0
FvH4_6g27870 Fragaria vesca HOM05D018771 ORTHO05D000521 3.8e-16 88.6 102 43.1
FAN09G2105 Fragaria x ananassa HOM05D018771 ORTHO05D000521 5.0e-16 88.2 106 41.5
FAN09G4071 Fragaria x ananassa HOM05D018771 ORTHO05D000521 6.5e-16 87.8 89 42.7
Haze_08062 Corylus avellana HOM05D000007 ORTHO05D000521 1.1e-15 87.0 115 43.5
CSS0009149 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.6e-14 83.2 92 47.8
Lj8A117T66 Lonicera japonica HOM05D000007 ORTHO05D000521 6.1e-14 81.3 92 45.7
Lalb_Chr17g0348371 Lupinus albus HOM05D000007 ORTHO05D000521 7.9e-14 80.9 91 49.5
MD17G1263300 Malus domestica HOM05D000007 ORTHO05D000521 7.9e-14 80.9 103 41.7
Rhsim07G0063600 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.4e-13 80.1 68 54.4
CSS0008382 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.3e-13 79.3 92 45.7
QL06p035449 Quercus lobata HOM05D000007 ORTHO05D000521 3.9e-13 78.6 104 43.3
Sabra01G0099300 Salix brachista HOM05D000007 ORTHO05D000521 3.9e-13 78.6 91 42.9
Potri.001G129200 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.9e-12 76.3 91 42.9
CSS0008530 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.5e-12 75.9 91 41.8
CSS0043567 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.5e-12 75.9 91 41.8
CiPaw.13G053300 Carya illinoinensis HOM05D000007 ORTHO05D000521 2.5e-12 75.9 116 37.9
vmacro12514 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 2.5e-12 75.9 91 40.7
Hma1.2p1_0106F.1_g050940 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.3e-12 75.1 130 41.5
Hma1.2p1_0106F.1_g050950 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.3e-12 75.1 130 41.5
Hma1.2p1_0213F.1_g090621 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 4.3e-12 75.1 130 41.5
Prupe.3G112000 Prunus persica HOM05D000007 ORTHO05D000521 7.4e-12 74.3 112 42.9
Cfa014274 Carpinus fangiana HOM05D000007 ORTHO05D000521 1.7e-11 73.2 93 41.9
DCAR_000593 Daucus carota HOM05D000007 ORTHO05D000521 1.7e-11 73.2 96 45.8
Lj8C11T0 Lonicera japonica HOM05D000007 ORTHO05D000521 1.7e-11 73.2 93 45.2
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 2.2e-11 72.8 90 41.1
Cfa010369 Carpinus fangiana HOM05D000007 ORTHO05D000521 2.8e-11 72.4 103 40.8
COL.COLO4_13971 Corchorus olitorius HOM05D000007 ORTHO05D000521 2.8e-11 72.4 92 42.4
Lalb_Chr03g0040301 Lupinus albus HOM05D000007 ORTHO05D000521 2.8e-11 72.4 90 40.0
Lalb_Chr03g0040311 Lupinus albus HOM05D000007 ORTHO05D000521 2.8e-11 72.4 90 40.0
Prupe.3G112200 Prunus persica HOM05D000007 ORTHO05D000521 2.8e-11 72.4 131 41.2
Cfa014273 Carpinus fangiana HOM05D000007 ORTHO05D000521 3.7e-11 72.0 87 43.7
CSS0006709 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 6.3e-11 71.2 91 41.8
CSS0040081 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 6.3e-11 71.2 91 41.8
Psat0s3499g0040 Pisum sativum HOM05D000007 ORTHO05D000521 8.2e-11 70.9 124 37.9
CSS0029161 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 1.1e-10 70.5 91 42.9
Rhsim01G0072600 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.1e-10 70.5 79 45.6
vmacro09383 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 1.1e-10 70.5 91 38.5
Rhsim04G0044400 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.4e-10 70.1 91 39.6
Medtr5g022040 Medicago truncatula HOM05D000007 ORTHO05D000521 1.8e-10 69.7 120 38.3
TPR.G4156 Trifolium pratense HOM05D000007 ORTHO05D000521 1.8e-10 69.7 119 39.5
CSS0009515 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 2.4e-10 69.3 87 43.7
Lj8C595T2 Lonicera japonica HOM05D000007 ORTHO05D000521 2.4e-10 69.3 92 44.6
Rhsim04G0040800 Rhododendron simsii HOM05D000007 ORTHO05D000521 2.4e-10 69.3 91 38.5
Lj8A0T15 Lonicera japonica HOM05D000007 ORTHO05D000521 3.1e-10 68.9 97 45.4
Lj8C4T2 Lonicera japonica HOM05D000007 ORTHO05D000521 3.1e-10 68.9 97 45.4
Medtr5g022900 Medicago truncatula HOM05D000007 ORTHO05D000521 3.1e-10 68.9 107 38.3
Medtr5g021860 Medicago truncatula HOM05D000007 ORTHO05D000521 9.1e-10 67.4 128 35.2
CANSAT64G2453 Cannabis sativa HOM05D000007 ORTHO05D000521 1.2e-09 67.0 108 37.0
Lj8A4T15 Lonicera japonica HOM05D000007 ORTHO05D000521 1.2e-09 67.0 93 44.1
RcHm_v2.0_Chr4g0395611 Rosa chinensis HOM05D000007 ORTHO05D000521 1.5e-09 66.6 91 38.5
RcHm_v2.0_Chr4g0419901 Rosa chinensis HOM05D000007 ORTHO05D000521 1.5e-09 66.6 91 38.5
FvH4_6g28330 Fragaria vesca HOM05D000007 ORTHO05D000676 2.0e-09 66.2 95 43.2
Hma1.2p1_0157F.1_g069160 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.0e-09 66.2 91 37.4
Hma1.2p1_0157F.1_g069186 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 2.0e-09 66.2 91 37.4
TPR.G18184 Trifolium pratense HOM05D000007 ORTHO05D000521 2.0e-09 66.2 123 36.6
Atru.chr4.13 Acer truncatum HOM05D000007 ORTHO05D000521 2.6e-09 65.9 91 35.2
Ciclev10011634m.g Citrus clementina HOM05D000007 ORTHO05D000521 2.6e-09 65.9 92 43.5
Haze_03323 Corylus avellana HOM05D000007 ORTHO05D000521 2.6e-09 65.9 102 39.2
Medtr4g027370 Medicago truncatula HOM05D000007 ORTHO05D000521 3.4e-09 65.5 96 39.6
Psat0s3499g0120 Pisum sativum HOM05D000007 ORTHO05D000521 3.4e-09 65.5 92 40.2
Gohir.A09G060800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 4.5e-09 65.1 92 40.2
Medtr5g021880 Medicago truncatula HOM05D000007 ORTHO05D000521 4.5e-09 65.1 107 37.4
Prupe.1G147000 Prunus persica HOM05D000007 ORTHO05D000521 4.5e-09 65.1 93 40.9
Thecc.04G272200 Theobroma cacao HOM05D000007 ORTHO05D000521 4.5e-09 65.1 92 40.2
Lj8P594T13 Lonicera japonica HOM05D000007 ORTHO05D000521 5.9e-09 64.7 93 40.9
Dinv29686 Davidia involucrata HOM05D000007 ORTHO05D000521 7.7e-09 64.3 112 38.4
FAN02G0113 Fragaria x ananassa HOM05D000007 ORTHO05D000521 7.7e-09 64.3 94 41.5
MD13G1177900 Malus domestica HOM05D000007 ORTHO05D000521 7.7e-09 64.3 92 38.0
Gohir.D09G059800 Gossypium hirsutum HOM05D000007 ORTHO05D000521 1.0e-08 63.9 92 40.2
Gorai.006G074400 Gossypium raimondii HOM05D000007 ORTHO05D000521 1.0e-08 63.9 92 40.2
Lj8P593T10 Lonicera japonica HOM05D000007 ORTHO05D000521 1.0e-08 63.9 88 43.2
RcHm_v2.0_Chr4g0419621 Rosa chinensis HOM05D000007 ORTHO05D000521 1.3e-08 63.5 100 37.0
DCAR_022309 Daucus carota HOM05D000007 ORTHO05D000521 1.7e-08 63.2 94 40.4
Lj8C593T5 Lonicera japonica HOM05D000007 ORTHO05D000521 1.7e-08 63.2 93 40.9
Prupe.1G146900 Prunus persica HOM05D000007 ORTHO05D000521 1.7e-08 63.2 93 40.9
vmacro01618 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 1.7e-08 63.2 93 41.9
vmacro23030 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 1.7e-08 63.2 93 41.9
Lj8C594T5 Lonicera japonica HOM05D000007 ORTHO05D000521 2.2e-08 62.8 93 39.8
Medtr5g007940 Medicago truncatula HOM05D000007 ORTHO05D000521 2.2e-08 62.8 101 37.6
SalBow6G3474 Salvia bowleyana HOM05D000007 ORTHO05D000521 2.9e-08 62.4 86 39.5
vmacro23187 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 2.9e-08 62.4 86 43.0
CSS0029460 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000521 3.8e-08 62.0 90 38.9
CANSAT64G1494 Cannabis sativa HOM05D000007 ORTHO05D000521 3.8e-08 62.0 63 44.4
Cc02_g23650 Coffea canephora HOM05D000007 ORTHO05D000521 5.0e-08 61.6 91 40.7
Prupe.1G147200 Prunus persica HOM05D000007 ORTHO05D000521 5.0e-08 61.6 88 40.9
RcHm_v2.0_Chr4g0395621 Rosa chinensis HOM05D000007 ORTHO05D000521 5.0e-08 61.6 85 38.8
TPR.G18192 Trifolium pratense HOM05D000007 ORTHO05D000521 5.0e-08 61.6 117 35.0
Lj8C593G6 Lonicera japonica HOM05D000007 ORTHO05D000521 6.5e-08 61.2 118 38.1
Peaxi162Scf00714g00316 Petunia axillaris HOM05D000007 ORTHO05D000521 1.4e-07 60.1 121 33.1
Rhsim11G0117300 Rhododendron simsii HOM05D000007 ORTHO05D000521 1.4e-07 60.1 96 41.7
Potri.004G000900 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.9e-07 59.7 93 41.9
Oeu016645.1 Olea europaea HOM05D000007 ORTHO05D000521 2.5e-07 59.3 90 38.9
MD04G1020000 Malus domestica HOM05D000007 ORTHO05D000521 4.2e-07 58.5 91 31.9
TAR365G1185 Trochodendron aralioides HOM05D000007 ORTHO05D000521 4.2e-07 58.5 99 32.3
Lj8A0T14 Lonicera japonica HOM05D000007 ORTHO05D000521 5.5e-07 58.2 86 41.9
Potri.008G216223 Populus trichocarpa HOM05D000007 ORTHO05D000521 7.2e-07 57.8 111 34.2
Nitab4.5_0003611g0030 Nicotiana tabacum HOM05D000007 ORTHO05D000521 9.4e-07 57.4 86 40.7
SGA_v2.0_scaffold8G04467 Striga asiatica HOM05D000007 ORTHO05D000521 9.4e-07 57.4 91 39.6
COL.COLO4_34989 Corchorus olitorius HOM05D000007 ORTHO05D000521 1.2e-06 57.0 92 38.0
Dinv19786 Davidia involucrata HOM05D019309 ORTHO05D000521 1.2e-06 57.0 129 31.8
Hma1.2p1_2194F.1_g316800 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.2e-06 57.0 92 37.0
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 1.2e-06 57.0 87 36.8
FvH4_1g29150 Fragaria vesca HOM05D000007 ORTHO05D000521 1.6e-06 56.6 91 35.2
Potri.008G215901 Populus trichocarpa HOM05D000007 ORTHO05D000521 1.6e-06 56.6 111 34.2
Manes.05G124500 Manihot esculenta HOM05D000007 ORTHO05D000521 2.7e-06 55.8 87 35.6
COL.COLO4_13966 Corchorus olitorius HOM05D000007 ORTHO05D000521 3.6e-06 55.5 96 35.4
HanXRQChr10g0296621 Helianthus annuus HOM05D000007 ORTHO05D000521 4.7e-06 55.1 91 33.0
MD13G1178100 Malus domestica HOM05D000007 ORTHO05D000521 4.7e-06 55.1 86 37.2
Rhsim06G0172500 Rhododendron simsii HOM05D000007 ORTHO05D000521 4.7e-06 55.1 84 33.3
Dinv05848 Davidia involucrata HOM05D000007 ORTHO05D000521 6.1e-06 54.7 97 33.0
Oeu022123.1 Olea europaea HOM05D000007 ORTHO05D000017 7.9e-06 54.3 84 33.3
TAR381G1454 Trochodendron aralioides HOM05D000007 ORTHO05D000521 7.9e-06 54.3 98 32.7


User provided reference genes

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