Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.9e-94 349.4 207 100.0
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 1.2e-48 197.2 185 64.3
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 4.0e-47 192.2 166 70.5
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 3.1e-44 182.6 188 61.7
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 7.0e-44 181.4 187 62.0
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 6.4e-37 158.3 189 56.1
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 8.3e-37 157.9 183 55.7
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 4.6e-35 152.1 185 53.0
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 5.0e-34 148.7 190 51.1
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 3.3e-33 146.0 184 52.2
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 4.3e-33 145.6 191 52.4
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 7.3e-33 144.8 189 50.8
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 1.2e-32 144.1 187 50.8
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 1.8e-31 140.2 181 48.6
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 6.8e-31 138.3 186 51.1
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 2.0e-30 136.7 191 47.1
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 2.0e-30 136.7 191 47.1
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 2.6e-30 136.3 192 48.4
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 5.8e-30 135.2 192 48.4
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 2.2e-29 133.3 196 47.4
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 6.4e-29 131.7 185 48.1
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 1.1e-28 131.0 199 47.2
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 1.2e-27 127.5 182 47.3
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 1.6e-27 127.1 138 54.3
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 2.1e-27 126.7 185 49.7
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 2.7e-27 126.3 184 45.7
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 4.6e-27 125.6 130 56.2
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.0e-26 124.4 200 44.0
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 1.0e-26 124.4 179 48.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 1.7e-26 123.6 160 53.8
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 2.3e-26 123.2 184 44.0
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 2.3e-26 123.2 180 47.2
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 2.3e-26 123.2 184 46.7
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 3.9e-26 122.5 172 46.5
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 8.6e-26 121.3 180 47.8
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 8.6e-26 121.3 184 46.2
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 1.1e-25 120.9 197 44.7
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.5e-25 120.6 182 46.2
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 1.5e-25 120.6 185 47.0
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 1.5e-25 120.6 119 57.1
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.9e-25 120.2 183 45.9
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.5e-25 119.8 192 44.8
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 2.5e-25 119.8 179 45.3
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 3.3e-25 119.4 189 43.9
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.3e-25 119.0 179 46.4
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 5.6e-25 118.6 183 45.4
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 5.6e-25 118.6 115 60.9
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 7.3e-25 118.2 132 53.0
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 1.2e-24 117.5 184 42.9
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 1.2e-24 117.5 200 43.0
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 2.1e-24 116.7 145 53.8
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 4.7e-24 115.5 169 47.9
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 6.2e-24 115.2 196 41.8
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.4e-23 114.0 124 56.5
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 1.8e-23 113.6 182 46.2
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 2.3e-23 113.2 133 50.4
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 4.0e-23 112.5 136 51.5
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 1.2e-22 110.9 173 46.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 1.5e-22 110.5 185 43.8
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 3.4e-22 109.4 183 44.3
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 7.5e-22 108.2 186 39.8
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 7.5e-22 108.2 165 47.3
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 7.5e-22 108.2 184 45.1
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 7.5e-22 108.2 184 42.4
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 2.9e-21 106.3 206 40.3
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 3.7e-21 105.9 187 40.6
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 6.4e-21 105.1 178 41.0
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 8.3e-21 104.8 188 44.1
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 1.1e-20 104.4 188 42.6
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 1.9e-20 103.6 181 43.1
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 1.9e-20 103.6 136 51.5
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 4.1e-20 102.4 186 40.3
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 4.1e-20 102.4 174 42.0
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 1.2e-19 100.9 189 39.2
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 2.1e-19 100.1 183 40.4
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 2.1e-19 100.1 181 40.3
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 2.7e-19 99.8 116 55.2
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 4.6e-19 99.0 184 41.3
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 4.6e-19 99.0 150 48.7
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 7.8e-19 98.2 166 47.6
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 1.0e-18 97.8 187 40.1
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.3e-18 97.4 181 39.2
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 2.3e-18 96.7 126 46.0
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 3.0e-18 96.3 105 55.2
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 6.6e-18 95.1 181 39.2
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 1.1e-17 94.4 181 39.2
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 1.1e-17 94.4 181 39.2
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.5e-17 94.0 180 38.3
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 1.9e-17 93.6 182 39.6
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 1.9e-17 93.6 181 38.7
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.9e-17 93.6 170 41.8
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.9e-17 93.6 117 49.6
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 4.3e-17 92.4 79 57.0
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 7.3e-17 91.7 66 66.7
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 9.5e-17 91.3 186 38.7
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 1.6e-16 90.5 181 39.2
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.6e-16 90.5 89 53.9
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 2.1e-16 90.1 116 50.9
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 4.7e-16 89.0 181 39.2
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 1.1e-15 87.8 118 49.2
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.4e-15 87.4 88 53.4
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 3.1e-15 86.3 190 37.9
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 5.2e-15 85.5 172 39.5
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 5.2e-15 85.5 66 63.6
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 2.2e-13 80.1 152 41.4
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.2e-11 74.3 198 34.3
AagrBONN_evm.TU.Sc2ySwM_228.825 Anthoceros agrestis HOM05D007065 ORTHO05D008960 2.3e-10 70.1 178 36.5
Mapoly0014s0118 Marchantia polymorpha HOM05D007065 ORTHO05D008960 1.1e-09 67.8 188 31.4
Os01g0939400 Oryza sativa ssp. japonica HOM05D007065 ORTHO05D008960 1.6e-08 63.9 87 44.8
CBR_g4751 Chara braunii HOM05D007065 ORTHO05D008960 1.1e-07 61.2 68 50.0
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 1.2e-06 57.8 101 41.6


User provided reference genes

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