Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.4e-173 612.8 310 100.0
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.3e-130 468.8 310 79.4
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 3.8e-126 455.3 310 78.1
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 2.7e-84 316.2 317 57.4
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 3.6e-76 289.3 306 53.6
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 1.5e-69 267.3 327 50.2
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 9.4e-69 264.6 317 47.9
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 1.0e-67 261.2 318 49.1
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 1.5e-66 257.3 315 49.8
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.6e-66 256.5 317 47.9
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 7.5e-66 255.0 315 49.5
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 1.7e-65 253.8 316 48.4
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.7e-65 253.8 311 49.2
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 2.2e-65 253.4 316 46.8
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 4.8e-65 252.3 318 46.5
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.4e-64 250.8 317 45.1
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 7.0e-64 248.4 317 45.4
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.0e-62 244.6 334 45.5
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 6.5e-62 241.9 317 44.8
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 5.5e-61 238.8 323 45.2
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.6e-60 237.3 316 44.6
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 4.7e-60 235.7 235 57.9
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 6.1e-60 235.3 317 44.5
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 1.8e-59 233.8 320 45.0
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 5.2e-59 232.3 322 42.9
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 8.9e-59 231.5 319 45.1
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 2.0e-58 230.3 315 42.5
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 5.7e-58 228.8 319 47.3
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 2.2e-57 226.9 320 44.4
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 2.2e-57 226.9 325 43.1
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 2.2e-57 226.9 290 45.2
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 2.4e-56 223.4 319 41.7
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 2.4e-56 223.4 319 41.7
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 5.4e-56 222.2 300 44.3
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.2e-55 221.1 314 43.3
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 5.9e-55 218.8 321 40.8
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 6.6e-54 215.3 318 42.5
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 8.6e-54 214.9 320 40.6
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 1.5e-53 214.2 313 40.6
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 3.3e-53 213.0 314 40.4
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 4.3e-53 212.6 324 42.3
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 1.2e-52 211.1 317 39.1
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.2e-52 211.1 319 41.4
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 1.2e-50 204.5 318 40.9
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 2.0e-50 203.8 308 42.2
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 9.8e-50 201.4 321 37.7
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 1.3e-49 201.1 315 41.0
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 2.2e-49 200.3 316 40.8
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 4.9e-49 199.1 321 38.9
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 1.1e-48 198.0 282 41.1
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 1.8e-48 197.2 316 41.1
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 3.2e-48 196.4 313 40.3
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 5.4e-48 195.7 306 40.5
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 1.2e-47 194.5 344 38.1
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 1.2e-47 194.5 319 40.1
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.6e-47 194.1 312 41.3
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 6.0e-47 192.2 315 40.6
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 1.3e-46 191.0 310 39.0
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 3.9e-46 189.5 305 38.0
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 3.9e-46 189.5 305 38.0
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 6.6e-46 188.7 283 42.0
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 1.1e-45 188.0 331 37.8
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 1.9e-45 187.2 277 40.4
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 3.3e-45 186.4 298 38.6
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 4.3e-45 186.0 333 37.8
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 4.3e-45 186.0 320 36.9
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 5.6e-45 185.7 305 39.7
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.6e-44 184.1 306 36.9
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 3.6e-44 183.0 320 36.9
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 3.6e-44 183.0 315 38.4
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 4.7e-44 182.6 319 38.2
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 4.7e-44 182.6 303 39.3
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 1.1e-43 181.4 307 38.1
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 3.1e-43 179.9 292 37.0
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 3.1e-43 179.9 306 35.9
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 4.0e-43 179.5 283 40.3
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 5.8e-42 175.6 311 38.3
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 4.9e-41 172.6 293 38.6
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 4.9e-41 172.6 301 39.5
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 2.4e-40 170.2 291 36.8
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 2.3e-38 163.7 318 37.1
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 5.0e-38 162.5 270 38.1
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 2.5e-37 160.2 315 36.2
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 7.3e-37 158.7 317 38.5
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.1e-35 154.8 292 36.3
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 5.2e-35 152.5 300 35.3
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 1.1e-32 144.8 310 34.2
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 3.2e-32 143.3 232 40.1
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.2e-31 141.4 296 34.1
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 3.5e-31 139.8 311 33.4
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 1.7e-30 137.5 285 35.1
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 2.3e-30 137.1 325 33.5
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.1e-29 134.8 306 34.3
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 3.3e-29 133.3 315 31.4
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.3e-29 132.1 234 41.0
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.3e-29 132.1 234 41.0
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 9.5e-29 131.7 319 32.9
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 1.4e-27 127.9 306 33.0
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 2.2e-25 120.6 342 30.1
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 3.2e-24 116.7 315 30.2
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 4.1e-24 116.3 318 31.1
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 7.8e-23 112.1 303 29.7
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 8.7e-22 108.6 142 43.7
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.6e-20 104.4 106 49.1
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 3.0e-14 83.6 84 50.0
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 5.1e-14 82.8 344 24.1
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 1.5e-13 81.3 244 27.5
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 3.3e-13 80.1 269 26.8
CsaV3_3G031910 Cucumis sativus L. HOM05D007109 ORTHO05D008813 1.8e-11 74.3 125 38.4
MBI19_g41373_MAGBIO Magnolia biondii HOM05D002440 ORTHO05D002576 7.6e-10 68.9 309 24.3
Aa31LG1G10730 Aethionema arabicum HOM05D002440 ORTHO05D002576 9.9e-10 68.6 305 24.3
Medtr3g034540 Medicago truncatula HOM05D007109 ORTHO05D008813 2.9e-09 67.0 126 32.5
BcaB03g13592 Brassica carinata HOM05D002440 ORTHO05D002576 6.4e-09 65.9 304 23.7
C05p00480 Brassica napus HOM05D002440 ORTHO05D002576 6.4e-09 65.9 304 23.7
BraA10t42324Z Brassica rapa HOM05D002440 ORTHO05D002576 6.4e-09 65.9 304 23.0
BolC5t28837H Brassica oleracea HOM05D002440 ORTHO05D002576 8.4e-09 65.5 304 23.7
MELO3C006091.2 Cucumis melo HOM05D002440 ORTHO05D002576 8.4e-09 65.5 301 23.9
A10p00440 Brassica napus HOM05D002440 ORTHO05D002576 1.1e-08 65.1 304 23.0
Psat3g108800 Pisum sativum HOM05D002440 ORTHO05D002576 1.1e-08 65.1 316 22.8
Sp1g00770 Schrenkiella parvula HOM05D002440 ORTHO05D002576 1.1e-08 65.1 316 23.7
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 1.1e-08 65.1 118 32.2
HPP92_015002 Vanilla planifolia HOM05D002440 ORTHO05D002576 2.4e-08 63.9 208 26.4
Lalb_Chr10g0096721 Lupinus albus HOM05D002440 ORTHO05D002576 3.2e-08 63.5 312 22.1
Zm00001eb043640 Zea mays HOM05D002440 ORTHO05D002576 3.2e-08 63.5 122 30.3
arahy.Tifrunner.gnm1.ann1.ZTTB8N Arachis hypogaea HOM05D002440 ORTHO05D002576 4.2e-08 63.2 308 26.0
Nn6g33296 Nelumbo nucifera HOM05D002440 ORTHO05D002576 5.4e-08 62.8 312 22.8
Os10g0513300 Oryza sativa ssp. japonica HOM05D002440 ORTHO05D002576 5.4e-08 62.8 202 24.8
Psat3g108760 Pisum sativum HOM05D002440 ORTHO05D002576 5.4e-08 62.8 314 23.6
RcHm_v2.0_Chr1g0357181 Rosa chinensis HOM05D002440 ORTHO05D002576 5.4e-08 62.8 305 24.9
Thhalv10008079m.g Eutrema salsugineum HOM05D002440 ORTHO05D002576 7.1e-08 62.4 313 23.3
Medtr8g028710 Medicago truncatula HOM05D002440 ORTHO05D002576 7.1e-08 62.4 311 23.8
Psat4g156680 Pisum sativum HOM05D002440 ORTHO05D002576 9.3e-08 62.0 332 22.3
AT1G01550 Arabidopsis thaliana HOM05D002440 ORTHO05D002576 1.2e-07 61.6 304 22.0
AL1G10850 Arabidopsis lyrata HOM05D002440 ORTHO05D002576 1.6e-07 61.2 304 22.0
Ca_23593_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 1.6e-07 61.2 311 22.8
Cc00_g17880 Coffea canephora HOM05D002440 ORTHO05D002576 1.6e-07 61.2 317 24.3
MD00G1111800 Malus domestica HOM05D002440 ORTHO05D002576 1.6e-07 61.2 311 22.8
Ca_00821_v3 Cicer arietinum L. HOM05D002440 ORTHO05D002576 2.1e-07 60.8 310 22.6
Lj3g0009121 Lotus japonicus HOM05D002440 ORTHO05D002576 2.1e-07 60.8 309 22.0
Carub.0001s0069 Capsella rubella HOM05D002440 ORTHO05D002576 2.7e-07 60.5 306 21.2
Dinv43850 Davidia involucrata HOM05D002440 ORTHO05D002576 2.7e-07 60.5 289 22.1
Prupe.2G175300 Prunus persica HOM05D002440 ORTHO05D002576 2.7e-07 60.5 311 23.5
CsaV3_3G008740 Cucumis sativus L. HOM05D002440 ORTHO05D002576 4.6e-07 59.7 119 30.3
TAR629G1939 Trochodendron aralioides HOM05D002440 ORTHO05D002576 6.0e-07 59.3 128 28.9
arahy.Tifrunner.gnm1.ann1.1NF82D Arachis hypogaea HOM05D002440 ORTHO05D002576 1.0e-06 58.5 308 24.0
MD01G1069200 Malus domestica HOM05D002440 ORTHO05D002576 1.0e-06 58.5 307 23.5
Eucgr.D02314 Eucalyptus grandis HOM05D002440 ORTHO05D002576 1.8e-06 57.8 310 21.6
TPR.G19397 Trifolium pratense HOM05D002440 ORTHO05D002576 1.8e-06 57.8 326 22.1
CSS0042224 Camellia sinensis var. sinensis HOM05D002440 ORTHO05D002576 3.0e-06 57.0 303 22.4
CiPaw.01G065100 Carya illinoinensis HOM05D002440 ORTHO05D002576 3.0e-06 57.0 307 22.5
ClCG05G001350 Citrullus lanatus HOM05D002440 ORTHO05D002576 3.0e-06 57.0 105 30.5
Dinv32508 Davidia involucrata HOM05D002440 ORTHO05D002576 3.0e-06 57.0 289 21.1
SGA_v2.0_scaffold4G02292 Striga asiatica HOM05D000137 ORTHO05D002576 3.0e-06 57.0 312 23.4
Migut.N01457 Erythranthe guttata HOM05D002440 ORTHO05D002576 5.1e-06 56.2 303 23.1
ATR0661G460 Amborella trichopoda HOM05D002440 ORTHO05D002576 6.7e-06 55.8 331 25.1
Nitab4.5_0009853g0010 Nicotiana tabacum HOM05D002440 ORTHO05D002576 6.7e-06 55.8 120 28.3
Potri.002G162600 Populus trichocarpa HOM05D002440 ORTHO05D002576 6.7e-06 55.8 311 22.2
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 8.7e-06 55.5 114 27.2
Lj1g0008716 Lotus japonicus HOM05D002440 ORTHO05D002576 8.7e-06 55.5 299 21.7


User provided reference genes

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